HHsearch alignment for GI: 254780363 and conserved domain: cd06187

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00  E-value=0  Score=337.56  Aligned_cols=221  Identities=22%  Similarity=0.305  Sum_probs=186.5

Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCC-CEEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf             988884799869999807789983997179999843985887665422857688-6058999943888566100-12388
Q gi|254780363|r   17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDD-KLEFFSIKVEQGPLTTHLQ-NIQPG   94 (264)
Q Consensus        17 V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~-~le~~i~~v~~G~~S~~L~-~l~~G   94 (264)
T Consensus         1 vv~i~~~t~d~~~~~l~~~~~~~~~~GQ~v~l~~~~-~~~~~R~ySias~p~~~~~l~l~Vk~~~~G~~S~~L~~~l~~G   79 (224)
T cd06187           1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPG-RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVG   79 (224)
T ss_pred             CEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCC
T ss_conf             955898279859999985998872899879999889-8805897053688999988999999968984888998539999


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r   95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL  174 (264)
Q Consensus        95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~  174 (264)
T Consensus        80 d~v~v~~-P~G~f~~~~~~-~~~~vliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~---  154 (224)
T cd06187          80 DRVRLSG-PYGTFYLRRDH-DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARH---  154 (224)
T ss_pred             CEEEEEC-CEECCEECCCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC---
T ss_conf             9899971-77552516778-986899965756235999999999759998289997158879988899999999878---


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             77405884389820454444465677543110478852899887313789996898999999999998698531567995
Q gi|254780363|r  175 KDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPG  254 (264)
Q Consensus       175 ~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g  254 (264)
T Consensus       155 -----~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~~yiCGP~~m~~~v~~~L~~~Gv~~~------  217 (224)
T cd06187         155 -----PWLRVVPVVSHEEGAWTGRR------GLVTDVVGRDGPDWADHDIYICGPPAMVDATVDALLARGAPPE------  217 (224)
T ss_pred             -----CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------
T ss_conf             -----99299999825898876664------7289999864788679899992999999999999998699789------


Q ss_pred             EEEEEE
Q ss_conf             099998
Q gi|254780363|r  255 TFVVER  260 (264)
Q Consensus       255 ~~~~E~  260 (264)
T Consensus       218 ~i~~E~  223 (224)
T cd06187         218 RIHFDK  223 (224)
T ss_pred             HEEEEE
T ss_conf             979816