HHsearch alignment for GI: 254780363 and conserved domain: cd06187
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=0 Score=337.56 Aligned_cols=221 Identities=22% Similarity=0.305 Sum_probs=186.5
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCC-CEEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 988884799869999807789983997179999843985887665422857688-6058999943888566100-12388
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDD-KLEFFSIKVEQGPLTTHLQ-NIQPG 94 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~-~le~~i~~v~~G~~S~~L~-~l~~G 94 (264)
T Consensus 1 vv~i~~~t~d~~~~~l~~~~~~~~~~GQ~v~l~~~~-~~~~~R~ySias~p~~~~~l~l~Vk~~~~G~~S~~L~~~l~~G 79 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPG-RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVG 79 (224)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCC
T ss_conf 955898279859999985998872899879999889-8805897053688999988999999968984888998539999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL 174 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~ 174 (264)
T Consensus 80 d~v~v~~-P~G~f~~~~~~-~~~~vliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~--- 154 (224)
T cd06187 80 DRVRLSG-PYGTFYLRRDH-DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARH--- 154 (224)
T ss_pred CEEEEEC-CEECCEECCCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC---
T ss_conf 9899971-77552516778-986899965756235999999999759998289997158879988899999999878---
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77405884389820454444465677543110478852899887313789996898999999999998698531567995
Q gi|254780363|r 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPG 254 (264)
Q Consensus 175 ~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g 254 (264)
T Consensus 155 -----~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~~yiCGP~~m~~~v~~~L~~~Gv~~~------ 217 (224)
T cd06187 155 -----PWLRVVPVVSHEEGAWTGRR------GLVTDVVGRDGPDWADHDIYICGPPAMVDATVDALLARGAPPE------ 217 (224)
T ss_pred -----CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------
T ss_conf -----99299999825898876664------7289999864788679899992999999999999998699789------
Q ss_pred EEEEEE
Q ss_conf 099998
Q gi|254780363|r 255 TFVVER 260 (264)
Q Consensus 255 ~~~~E~ 260 (264)
T Consensus 218 ~i~~E~ 223 (224)
T cd06187 218 RIHFDK 223 (224)
T ss_pred HEEEEE
T ss_conf 979816