HHsearch alignment for GI: 254780363 and conserved domain: cd06195
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=0 Score=406.33 Aligned_cols=238 Identities=42% Similarity=0.748 Sum_probs=213.8
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECC-CEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89888847998699998077899839971799998439-85887665422857688605899994388856610012388
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVN-GRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~-g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~G 94 (264)
T Consensus 1 tvv~~~~~t~dv~~l~l~~~~~~~f~pGQyv~l~~~~~~~~~~~R~YSiss~p~~~~l~~~ik~v~~G~~S~~L~~l~~G 80 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPG 80 (241)
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCC
T ss_conf 96889975798799998289998879898189999638992787434455389998299999996399531658747999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL 174 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~ 174 (264)
T Consensus 81 d~v~v~~gP~G~f~l~~~~~~~~ivlIAgGtGItP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~--- 157 (241)
T cd06195 81 DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEALAKQY--- 157 (241)
T ss_pred CEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC---
T ss_conf 99964269975145155678867899991512455999999999709998479999758978868999999999777---
Q ss_pred HHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77405884389820454444--4656775431104788528998873137899968989999999999986985315679
Q gi|254780363|r 175 KDLIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSR 252 (264)
Q Consensus 175 ~~~~~~~~~~~~~~s~e~~~--~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~ 252 (264)
T Consensus 158 ----~~~~~~~~~~s~~~~~~~~~g~v~~~~~~~~l~~~~~~-~~~~~~~~~ylCGPp~M~~~~~~~L~~~Gv~~~~~~~ 232 (241)
T cd06195 158 ----NGKFRYVPIVSREKENGALTGRIPDLIESGELEEHAGL-PLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRK 232 (241)
T ss_pred ----CCCEEEEEEECCCCCCCCCCCCCCHHHHHCHHHHHHCC-CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ----99769999975788877861400415550469997378-8897896899929999999999999983999777789
Q ss_pred CCEEEEEEE
Q ss_conf 950999987
Q gi|254780363|r 253 PGTFVVERA 261 (264)
Q Consensus 253 ~g~~~~E~~ 261 (264)
T Consensus 233 ~~~i~~e~~ 241 (241)
T cd06195 233 PGNITVEKY 241 (241)
T ss_pred CCCEEEECC
T ss_conf 974898549