HHsearch alignment for GI: 254780363 and conserved domain: cd06199
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.90 E-value=1.5e-23 Score=177.24 Aligned_cols=173 Identities=18% Similarity=0.267 Sum_probs=121.0
Q ss_pred EEEEEEECCCCCC--CCEEEEEEEE--------CCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 8766542285768--8605899994--------3888566100-123885100257887321643223586699997586
Q gi|254780363|r 57 ISRAYSMASPCWD--DKLEFFSIKV--------EQGPLTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGT 125 (264)
Q Consensus 57 ~~R~YSiaS~p~~--~~le~~i~~v--------~~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGt 125 (264)
T Consensus 145 ~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GlcS~~L~~~l~~g~~v~~~i~~~~~F~lP~-~~~~PiImIg~GT 223 (360)
T cd06199 145 QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPHFRLPE-DPDAPIIMVGPGT 223 (360)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCC-CCCCCEEEEECCC
T ss_conf 883001125865799869999999887579973587520888721779998899995489889998-9999869983685
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 727789988763410357857999951998-8987335668989864457774058843898204544444656775431
Q gi|254780363|r 126 GIAPFVSVIRDPGTYEKFDEVIVTQTCRQV-VELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (264)
Q Consensus 126 GItP~~sii~~~~~~~~~~~i~L~~g~R~~-~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~ 204 (264)
T Consensus 224 GiAPfR~FlqeR~~~~~~G~~~LffGCR~~~~D~lY~~El~~~~~~g--------~l~~l~~AFSRd~~~-k~YVQd~l~ 294 (360)
T cd06199 224 GIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDG--------VLTRLDTAFSRDQAE-KVYVQDRMR 294 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--------CCEEEEEEEECCCCC-CCCHHHHHH
T ss_conf 60878999999998258898799960578323235899999999749--------834899999458888-886789999
Q ss_pred CCHHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 10478852899887313789996898-9999999999986
Q gi|254780363|r 205 SGEFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 205 ~g~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
T Consensus 295 e~~-~~v~--~ll-~~ga~iYVCG~a~~M~~~V~~~l~~i 330 (360)
T cd06199 295 EQG-AELW--AWL-EEGAHFYVCGDAKRMAKDVDAALLDI 330 (360)
T ss_pred HHH-HHHH--HHH-HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 819-9999--999-78979999899524479999999999