HHsearch alignment for GI: 254780363 and conserved domain: cd06202
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.91 E-value=4.4e-24 Score=180.80 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=119.0
Q ss_pred EEEEEEECCCCC--CCCEEEEEE--EE---------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 876654228576--886058999--94---------38885661001238851002578873216432235866999975
Q gi|254780363|r 57 ISRAYSMASPCW--DDKLEFFSI--KV---------EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFST 123 (264)
Q Consensus 57 ~~R~YSiaS~p~--~~~le~~i~--~v---------~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAg 123 (264)
T Consensus 176 ~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~~~~r~GlcS~~L~~l~~g~~v~~~vr~~~~F~lP~-d~~~PiImIg~ 254 (406)
T cd06202 176 QPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE-DPSVPVIMVGP 254 (406)
T ss_pred CCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEECCCCCCCCC-CCCCCEEEEEC
T ss_conf 86026751686679987999999998664788874553011077755899798999994798788988-89998799807
Q ss_pred CCCHHHHHHHHHHHHH--------HCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 8672778998876341--------03578579999519988-98733566898986445777405884-38982045444
Q gi|254780363|r 124 GTGIAPFVSVIRDPGT--------YEKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDY 193 (264)
Q Consensus 124 GtGItP~~sii~~~~~--------~~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~ 193 (264)
T Consensus 255 GTGiAPFR~FlqeR~~~~~~~~~~~~~~G~~~LffGcR~~~~D~ly~~El~~~~~~---------g~l~~l~~AfSRd~~ 325 (406)
T cd06202 255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK---------GVLTEVYTALSREPG 325 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC---------CCCCEEEEEEECCCC
T ss_conf 87717789999999998875542168878759996078753225589999999875---------985058998754799
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 446567754311047885289988731378999689899999999999869
Q gi|254780363|r 194 LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 194 ~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
T Consensus 326 ~~k~YVQd~i~e~~~-~v--~~~l~~~ga~iYVCG~~~M~~~V~~~l~~i~ 373 (406)
T cd06202 326 KPKTYVQDLLKEQAE-SV--YDALVREGGHIYVCGDVTMAEDVSQTIQRIL 373 (406)
T ss_pred CCCCCHHHHHHHHHH-HH--HHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 898746899997499-99--9999819979999799824889999999999