HHsearch alignment for GI: 254780363 and conserved domain: cd06212
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=0 Score=339.53 Aligned_cols=226 Identities=21% Similarity=0.358 Sum_probs=185.4
Q ss_pred CCEEEEEEEECCCCEEEEEEE--CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC
Q ss_conf 106898888479986999980--778998399717999984398588766542285768-86058999943888566100
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCIT--RPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ 89 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~--~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~ 89 (264)
T Consensus 1 ~~a~V~~i~~~t~di~~~~l~~~~~~~~~f~~GQ~v~~~~~--g~~~~R~ySi~s~p~~~~~~~l~Vk~~~~G~~s~~l~ 78 (232)
T cd06212 1 FVGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVP--GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred CEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEC--CCCCEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 91999999975899399999939999687189855999989--9881789974627999988999999977995588998
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf -1238851002578873216432235866999975867277899887634103578579999519988987335668989
Q gi|254780363|r 90 -NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEI 168 (264)
Q Consensus 90 -~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~ 168 (264)
T Consensus 79 ~~l~~Gd~v~v~g-P~G~f~l~~~-~~~~~vliAgG~GitP~~sml~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~ 156 (232)
T cd06212 79 DGLAVGDPVTVTG-PYGTCTLRES-RDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALG 156 (232)
T ss_pred HCCCCCCEEEEEC-CCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 5589998999973-7567510678-8987899956877025999999999749997489998448878878899999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC--CCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 86445777405884389820454--4444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 169 SQDEILKDLIGQKLKFYRTVTQE--DYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~s~e--~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
T Consensus 157 ~~~--------~~~~~~~~~s~~~~~~~~~g~------~g~i~~~l~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv~ 222 (232)
T cd06212 157 EKI--------PDFTFIPALSESPDDEGWSGE------TGLVTEVVQRNEATLAGCDVYLCGPPPMIDAALPVLEMSGVP 222 (232)
T ss_pred HHC--------CCCEEEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 878--------992999998337866676664------560889998328986799999939999999999999986998
Q ss_pred CCCCCCCCEEEEEEEEE
Q ss_conf 31567995099998763
Q gi|254780363|r 247 EGSNSRPGTFVVERAFS 263 (264)
Q Consensus 247 ~~~~~~~g~~~~E~~~~ 263 (264)
T Consensus 223 ~~------~I~~E~-Ft 232 (232)
T cd06212 223 PD------QIFYDK-FT 232 (232)
T ss_pred HH------HEEEEE-CC
T ss_conf 89------958740-79