>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

Probab=100.00 E-value=0 Score=357.15 Aligned_cols=235 Identities=19% Similarity=0.306 Sum_probs=194.6 Q ss_pred CCEEEEEEEECCCCEEEEEEECCC----CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC Q ss_conf 106898888479986999980778----9983997179999843985887665422857688605899994388856610 Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPK----SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL 88 (264) Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~----~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L 88 (264) T Consensus 2 ~p~~V~~i~~et~dv~~~~l~~p~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~i~Vk~~~~G~~S~~l 81 (241) T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241) T ss_pred EEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCHHH T ss_conf 20299999997999199999838876668897999689999732996874333404679999799999998799704788 Q ss_pred C-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH Q ss_conf 0-123885100257887321643223586699997586727789988763410357857999951998898733566898 Q gi|254780363|r 89 Q-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167 (264) Q Consensus 89 ~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~ 167 (264) T Consensus 82 ~~~l~~Gd~v~v~g-P~G~f~~~~~~~~~~lvliAgG~GitP~~sml~~~l~~~~~~~v~l~~g~r~~~d~~~~~el~~l 160 (241) T cd06214 82 NDELKAGDTLEVMP-PAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASVIFREELADL 160 (241) T ss_pred HHCCCCCCEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 84189999999765-75772406777886199995687518499999999974999838999807997997889999999 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC Q ss_conf 98644577740588438982045444446567754311047885289988731378999689899999999999869853 Q gi|254780363|r 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264) Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264) T Consensus 161 ~~~-------~~~~~~~~~~~s~~~~~~~~~~-Gri~~~~v~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~L~~~Gv~~ 232 (241) T cd06214 161 KAR-------YPDRLTVIHVLSREQGDPDLLR-GRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVPA 232 (241) T ss_pred HHH-------CCCCEEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCH T ss_conf 986-------7797899999888998876656-75389999999874157877868999199999999999999869978 Q ss_pred CCCCCCCEEEEEEEEE Q ss_conf 1567995099998763 Q gi|254780363|r 248 GSNSRPGTFVVERAFS 263 (264) Q Consensus 248 ~~~~~~g~~~~E~~~~ 263 (264) T Consensus 233 ~------~I~~E~-Ft 241 (241) T cd06214 233 E------RIHREL-FT 241 (241) T ss_pred H------HEEEEE-CC T ss_conf 9------959831-59

HHsearch alignment for GI: 254780363 and conserved domain: cd06214