>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

Probab=100.00 E-value=0 Score=333.79 Aligned_cols=223 Identities=21% Similarity=0.367 Sum_probs=184.0 Q ss_pred EEEEEEEECCCCEEEEEEECCCC--CCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-C Q ss_conf 68988884799869999807789--98399717999984398588766542285768-86058999943888566100-1 Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKS--FRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-N 90 (264) Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~--~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~ 90 (264) T Consensus 1 lrV~~~~~~t~dv~~~~l~~~~~~~~~f~aGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~~~~Vk~~~~G~~S~~l~~~ 80 (231) T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231) T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHC T ss_conf 99999999699949999985998989858987799997669937876663355799999899999995598067899961 Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 23885100257887321643223586699997586727789988763410357857999951998898733566898986 Q gi|254780363|r 91 IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264) Q Consensus 91 l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264) T Consensus 81 l~~G~~v~v~g-P~G~f~l~~~-~~~~ivlIAgG~GitP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~~el~~l~~~ 158 (231) T cd06215 81 LKVGDELWASG-PAGEFTLIDH-PADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEELARR 158 (231) T ss_pred CCCCCEEEEEE-CCCCCCCCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 88999999970-3448745788-878789998167778479999999970999971899706997993579999999976 Q ss_pred HHHHHHHHCCCCEEEEECCCCC-CCCC---CCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC Q ss_conf 4457774058843898204544-4446---56775431104788528998873137899968989999999999986985 Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQED-YLYK---GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264) Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~-~~~~---grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264) T Consensus 159 ~--------~~~~~~~~~s~~~~~~~~~~~Gri~~~----~l~~~----~~~~~~~~~yiCGP~~m~~~~~~~L~~~Gv~ 222 (231) T cd06215 159 H--------PNFRLHLILEQPAPGAWGGYRGRLNAE----LLALL----VPDLKERTVFVCGPAGFMKAVKSLLAELGFP 222 (231) T ss_pred C--------CCCEEEEEECCCCCCCCCCCCCCCCHH----HHHHH----CCCCCCCEEEEECCHHHHHHHHHHHHHCCCC T ss_conf 8--------991999998888987665842652999----99743----7997897999949999999999999986997 Q ss_pred CCCCCCCCEEEEEEE Q ss_conf 315679950999987 Q gi|254780363|r 247 EGSNSRPGTFVVERA 261 (264) Q Consensus 247 ~~~~~~~g~~~~E~~ 261 (264) T Consensus 223 ~~------~I~~E~F 231 (231) T cd06215 223 MS------RFHQESF 231 (231) T ss_pred HH------HEEEEEC T ss_conf 89------7698179

HHsearch alignment for GI: 254780363 and conserved domain: cd06215