HHsearch alignment for GI: 254780363 and conserved domain: cd06219
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.96 E-value=1.3e-27 Score=204.36 Aligned_cols=200 Identities=18% Similarity=0.221 Sum_probs=149.4
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8988884799869999807789-98399717999984398588766542285-768860589999438885661001238
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASP-CWDDKLEFFSIKVEQGPLTTHLQNIQP 93 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-p~~~~le~~i~~v~~G~~S~~L~~l~~ 93 (264)
T Consensus 2 kI~~~~~i~~~~~~l~l~ap~~a~~~~PGQFvml~~~~~~e--r~P~Si~~~d~~~g~i~~~~~~v--G~gT~~L~~l~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKGE--RIPLTIADWDPEKGTITIVVQVV--GKSTRELATLEE 77 (248)
T ss_pred EEEEEEEECCCEEEEEEECCCHHHHCCCCCEEEEEECCCCC--EEEEEEEEECCCCCEEEEEEEEE--CCHHHHHHCCCC
T ss_conf 68789992598899999870847508998179999799996--44289888769999999999963--905989961889
Q ss_pred CCEE-ECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8510-025788732-16432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 94 GDTI-LLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 94 Gd~i-~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
T Consensus 78 Gd~l~~v~G-PlG~~f~~~---~~~~~llVaGGiG~APl~~la~~l~~--~g~~v~~i~G~r~~~~~~~~~~~~~~---- 147 (248)
T cd06219 78 GDKIHDVVG-PLGKPSEIE---NYGTVVFVGGGVGIAPIYPIAKALKE--AGNRVITIIGARTKDLVILEDEFRAV---- 147 (248)
T ss_pred CCEEEEEEC-CCCCCCCCC---CCCEEEEECCCEECCCHHHHHHHHHH--CCCEEEEEECCCCHHHCCCHHHHHHH----
T ss_conf 998837874-688874507---89619998473522535999999998--79958999579997985109898740----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 457774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
T Consensus 148 -------~~~~~~--~tddgs~g~~G~vt~~l~~-~l~-----~--~~~~d~i~~cGP~~Mm~~v~~~~~~~~~~ 205 (248)
T cd06219 148 -------SDELII--TTDDGSYGEKGFVTDPLKE-LIE-----S--GEKVDLVIAIGPPIMMKAVSELTRPYGIP 205 (248)
T ss_pred -------CCEEEE--ECCCCCCCCCCCHHHHHHH-HHH-----C--CCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf -------876999--8578888851401068999-874-----5--67864899849999999999999862983