HHsearch alignment for GI: 254780363 and conserved domain: cd06220
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=2.5e-32 Score=235.93 Aligned_cols=191 Identities=24% Similarity=0.374 Sum_probs=146.2
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 68988884799869999807789983997179999843985887665422857688605899994388856610012388
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~G 94 (264)
T Consensus 1 ~~i~ev~~et~~v~t~~l~--~~~~~~pGQFv~l~~~~~~~---~p~si~~~~~--~~~~~v~~v--G~~T~~l~~~~~G 71 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFD--WDFDFKPGQFVMVWVPGVDE---IPMSLSYIDG--PNSITVKKV--GEATSALHDLKEG 71 (233)
T ss_pred CEEEEEEHHCCCCEEEEEC--CCCCCCCCCEEEEEECCCCC---EEEEEECCCC--CCEEEEEEE--CHHHHHHHCCCCC
T ss_conf 9899971218982899988--88984899759999899994---6789966899--647999997--8379899708999
Q ss_pred CEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 510025788732-1643223586699997586727789988763410357857999951998898733566898986445
Q gi|254780363|r 95 DTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEI 173 (264)
Q Consensus 95 d~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~ 173 (264)
T Consensus 72 d~i~v~G-P~G~~f~~----~~~~~llvaGG~GiaPl~~l~~~l~---~~~~v~~~~G~rs~~~l~~~~el~~------- 136 (233)
T cd06220 72 DKLGIRG-PYGNGFEL----VGGKVLLIGGGIGIAPLAPLAERLK---KAADVTVLLGARTKEELLFLDRLRK------- 136 (233)
T ss_pred CEEEEEE-CCCCCCCC----CCCEEEEEECCEEHHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHHH-------
T ss_conf 9899983-35774012----7981999917464677799999998---6698799997587688656998863-------
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 7774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 174 ~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
T Consensus 137 -----~~~~~i--~tdDGs~G~kG~Vt~~l------~~l~~~----~~d~v~~CGP~~Mmkav~~~~~~~gv~ 192 (233)
T cd06220 137 -----SDELIV--TTDDGSYGFKGFVTDLL------KELDLE----EYDAIYVCGPEIMMYKVLEILDERGVR 192 (233)
T ss_pred -----HCCEEE--EECCCCCCCCCCHHHHH------HHHCCC----CCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf -----271689--94578888643676879------863456----788999979869999999999874998