RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>gnl|CDD|182844 PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.
Length = 248
Score = 132 bits (333), Expect = 1e-31
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 20/245 (8%)
Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFS 76
V ++++TD LF + P F +G+F LGL ++G R+ RAYS + + LEF+
Sbjct: 9 VTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYL 67
Query: 77 IKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136
+ V +G L+ L ++PGD + + ++ G VLD + L++ +TGT I P++S++++
Sbjct: 68 VTVPEGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQE 127
Query: 137 PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL-- 194
E+F +++ R +L Y + +M E+ Q KL+ V++E
Sbjct: 128 GKDLERFKNLVLVHAARYAADLSY-LPLMQELEQR------YEGKLRIQTVVSRETAPGS 180
Query: 195 YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL-----IAKKFREGS 249
GR+ I SGE + L P++ +T +M+CG+P M+ D + LL + K R
Sbjct: 181 LTGRVPALIESGELEAAVGL-PMDAETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRR-- 237
Query: 250 NSRPG 254
RPG
Sbjct: 238 --RPG 240
>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK
subunit. Phenylacetate-CoA oxygenase is comprised of a
five gene complex responsible for the hydroxylation of
phenylacetate-CoA (PA-CoA) as the second catabolic step
in phenylacetic acid (PA) degradation. Although the
exact function of this enzyme has not been determined,
it has been shown to be required for phenylacetic acid
degradation and has been proposed to function in a
multicomponent oxygenase acting on phenylacetate-CoA.
Length = 352
Score = 56.8 bits (137), Expect = 6e-09
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 31/217 (14%)
Query: 38 FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL-QNIQPGDT 96
+RF G+ + L V+G + R+YS+ S ++ K+ G +T I+PGDT
Sbjct: 31 YRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDT 90
Query: 97 ILLHKKSTGTLVLDALIP-GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQV 155
+ + G D P + G+GI P +S+ E ++ R
Sbjct: 91 LEV-MAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIA----------ETVLAAEPRST 139
Query: 156 VELQYG----IDVMHEISQDEI--LKDLIGQKLKFYRTVTQEDY---LYKGRITNHILSG 206
L YG VM +E+ LKD Q+ +++E L GR+ G
Sbjct: 140 FTLVYGNRRTASVMF---AEELADLKDKHPQRFHLAHVLSREPREAPLLSGRL-----DG 191
Query: 207 EFYRNMDLSPLNPDT-DRIMICGSPTMIVDMKDLLIA 242
E + S ++ D D +CG M+ D + L
Sbjct: 192 ERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTG 228
>gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma;
Provisional.
Length = 289
Score = 48.6 bits (116), Expect = 2e-06
Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 32/255 (12%)
Query: 9 PVNVYCESVISIKHYTDR--LFRFCITRP---KSFRFRSGEFVMLGLMVNGR-RISRAYS 62
P ++ ++ + T+R LF P +SF F+ G+FV + + G IS
Sbjct: 2 PYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISIC-- 59
Query: 63 MASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFS 122
+SP E + G +TT + ++ GD + + +D + G L L +
Sbjct: 60 -SSPTRKGFFELCIRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEM-EGMDLLLIA 115
Query: 123 TGTGIAPFVSVIR---DPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLI- 178
G G+AP SV+ D K+ + + + Y D++ DE++KDL
Sbjct: 116 GGLGMAPLRSVLLYAMDNRW--KYGNITLIYGAK------YYEDLLF---YDELIKDLAE 164
Query: 179 GQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSP---LNPDTDRIMICGSPTMI 233
+ +K ++VT++ G I DL +P ICG P M
Sbjct: 165 AENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFREANTDPKNTYAAICGPPVMY 224
Query: 234 VDMKDLLIAKKFREG 248
+ LI + +R
Sbjct: 225 KFVFKELINRGYRPE 239
>gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional.
Length = 312
Score = 44.3 bits (105), Expect = 3e-05
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 34 RPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHLQNIQ 92
RP R+R+G+ ++L ++R YS+AS P D LEF G + +Q
Sbjct: 115 RP--LRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQ 169
Query: 93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136
GD + L + G L D L+L + GTG+AP ++R+
Sbjct: 170 VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILRE 213
>gnl|CDD|177894 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 42.0 bits (99), Expect = 2e-04
Identities = 70/261 (26%), Positives = 104/261 (39%), Gaps = 53/261 (20%)
Query: 4 VSPKLPVNVYCESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYS 62
++P+ + IS+ H RLFRF + G+ V L +NG+ RAY+
Sbjct: 629 LNPREKIPCRLVEKISLSHDV-RLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYT 687
Query: 63 MASPCWDDKLEFFS--IKV----------EQGPLTTHLQNIQPGDTI-----LLHKKSTG 105
S DD++ F IKV G ++ +L ++ GDTI L H + G
Sbjct: 688 PTSS--DDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAG 745
Query: 106 T---LVLDALIPGNRLYLFSTGTGIAPFVSVI----RDPGTYEKFDEVIVTQTCRQV--V 156
LV +L + + GTGI P VI RDP E E+ + R +
Sbjct: 746 RGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP---EDKTEMSLVYANRTEDDI 802
Query: 157 ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQ---EDYLY-KGRITNHILSGEFYRNM 212
L+ +D D +LK + V+Q E + Y GR+T +L
Sbjct: 803 LLREELDRWAAEHPD---------RLKVWYVVSQVKREGWKYSVGRVTEAMLREH----- 848
Query: 213 DLSPLNPDTDRIMICGSPTMI 233
L +T +M CG P MI
Sbjct: 849 -LPEGGDETLALM-CGPPPMI 867
>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase;
Validated.
Length = 339
Score = 39.1 bits (92), Expect = 0.001
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 25/110 (22%)
Query: 36 KSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94
+ ++ +G+++ ++ +G+R R+YS+A+ P LE + G T H+
Sbjct: 128 ERLQYLAGQYIEF-ILKDGKR--RSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALKE 184
Query: 95 DTIL----------LHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVI 134
IL L + S +VL A +GTG AP S++
Sbjct: 185 RDILRIEGPLGTFFLREDSDKPIVLLA-----------SGTGFAPIKSIV 223
>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional.
Length = 340
Score = 37.0 bits (86), Expect = 0.005
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 50 LMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHL-QNIQPGDTILLHKKSTGTL 107
L + G R+YS A+ P ++L+F + G ++ +L + Q GD IL + G
Sbjct: 145 LQIPGTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNYLRERCQVGDEILF-EAPLGAF 203
Query: 108 VLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167
L + L + GTG++ F+ ++ DE + Q C V L YG+ +
Sbjct: 204 YLREV--ERPLVFVAGGTGLSAFLGML---------DE-LAEQGCSPPVHLYYGVRHAAD 251
Query: 168 ISQDEILKDLIGQKLKFYR---TVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRI 224
+ + + L ++L +R V++ ++G+ G + + D + L +
Sbjct: 252 LCELQRLAAY-AERLPNFRYHPVVSKASADWQGK------RGYIHEHFDKAQLRDQAFDM 304
Query: 225 MICGSPTMIVDMKDLL 240
+CG P M+ +K L
Sbjct: 305 YLCGPPPMVEAVKQWL 320
>gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer
subunit; Reviewed.
Length = 250
Score = 33.3 bits (77), Expect = 0.065
Identities = 51/251 (20%), Positives = 83/251 (33%), Gaps = 74/251 (29%)
Query: 8 LPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVML---GLMVNGRRISRAYSMA 64
P N+ ++ K ++ + K F + G+FVM+ G+ R +
Sbjct: 3 KPENMK---IVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLER-----PI- 53
Query: 65 SPCWDDKLEF-FSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTL--VLDALIPGNRLYLF 121
S DK E + G T L ++ GD + G L D G ++ L
Sbjct: 54 SISDIDKNEITILYRKV-GEGTKKLSKLKEGDEL----DIRGPLGNGFDLEEIGGKVLLV 108
Query: 122 STGTGIAPFVSVI---RDPGTYEKF-------DEVIVTQTCRQVVELQYGIDVMHEISQD 171
G G+AP + + G DEVI + +V ++
Sbjct: 109 GGGIGVAPLYELAKELKKKGVEVTTVLGARTKDEVIFEEEFAKVGDVY------------ 156
Query: 172 EILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGS 229
VT +D Y +KG +T+ L L+ + D I CG
Sbjct: 157 ----------------VTTDDGSYGFKGFVTD-----------VLDELDSEYDAIYSCGP 189
Query: 230 PTMIVDMKDLL 240
M MK ++
Sbjct: 190 EIM---MKKVV 197
>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B;
Provisional.
Length = 263
Score = 32.6 bits (75), Expect = 0.10
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 46/228 (20%)
Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFS 76
++ I +TD + F + + G+F + L ++ A S D ++
Sbjct: 12 ILDITKHTDIEYTFRVEV--DGPVKPGQFFEVSL----PKVGEAPISVSDYGDGYIDLTI 65
Query: 77 IKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIR- 135
+V G +T + N++ GD + L +D G L + + GTG+AP ++R
Sbjct: 66 RRV--GKVTDEIFNLKEGDKLFLRGPYGNGFPVDTY-KGKELIVVAGGTGVAPVKGLMRY 122
Query: 136 ---DPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL--KDLIGQKLKFYRTVT- 189
+P + D +I+ G + D+IL +DL + K +T
Sbjct: 123 FYENPQEIKSLD-LIL------------GFK-----NPDDILFKEDLKRWREKINLILTL 164
Query: 190 ---QEDYLYK-GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMI 233
+E Y G +T +I + L + D ++++ G P M+
Sbjct: 165 DEGEEGYRGNVGLVTKYI------PELTLK--DIDNMQVIVVGPPIMM 204
>gnl|CDD|181209 PRK08051, fre, FMN reductase; Validated.
Length = 232
Score = 32.1 bits (74), Expect = 0.17
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLE 73
V S++ TD ++R + F FR+G+++M+ V G + R +S+AS P +E
Sbjct: 7 VTSVEAITDTVYRVRLVPEAPFSFRAGQYLMV---VMGEKDKRPFSIASTPREKGFIE 61
>gnl|CDD|178663 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional.
Length = 307
Score = 31.6 bits (72), Expect = 0.21
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 88 LQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIR 135
L + +PGD + + S ++L P + +TGTGIAPF +R
Sbjct: 129 LCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLR 176
>gnl|CDD|173293 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 31.1 bits (70), Expect = 0.31
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 148 VTQTCRQVVEL-QYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLYKG----RITN 201
+T+ CRQV EL Q G ++S D + + L+ Q L Y T D L + R++N
Sbjct: 152 ITRACRQVAELVQQG-----KLSADAVNEQLVEQHL--YTADTPPPDLLIRTSGEMRLSN 204
Query: 202 HILSGEFYRNMDLSP-LNPDTDR 223
+L Y M + L PD DR
Sbjct: 205 FLLWQMAYTEMYFTDILWPDFDR 227
>gnl|CDD|177929 PLN02292, PLN02292, ferric-chelate reductase.
Length = 702
Score = 30.6 bits (69), Expect = 0.39
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 118 LYLFSTGTGIAPFVSVIRD 136
L + S G+GI PF+S+IRD
Sbjct: 434 LVMVSGGSGITPFISIIRD 452
>gnl|CDD|178662 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
Length = 367
Score = 29.6 bits (66), Expect = 0.84
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 81 QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGN---RLYLFSTGTGIAPFVSVI 134
+G + L +++PG + K TG + + L+P + + + +TGTGIAPF S +
Sbjct: 182 KGVCSNFLCDLKPGAEV----KITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 234
>gnl|CDD|150050 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22.
Rsm22 has been identified as a mitochondrial small
ribosomal subunit and is a methyltransferase. In
Schizosaccharomyces pombe, Rsm22 is tandemly fused to
Cox11 (a factor required for copper insertion into
cytochrome oxidase) and the two proteins are
proteolytically cleaved after import into the
mitochondria.
Length = 275
Score = 29.8 bits (67), Expect = 0.84
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 23/136 (16%)
Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVEL-QYGIDVMHEISQDEILKDLIG 179
G G A + + + + V + + + + + +D+IG
Sbjct: 41 VGAGPGTALWAA----SELWPGLEPATVIDASEAALAIGEELARHIPALKHAWRARDVIG 96
Query: 180 QKLKFYRTVTQEDYLYKGRITNHILSGEFY---RNMDLSPLNPDTDRIMIC---GSPT-- 231
L F L +++L E R + L + ++ G+P
Sbjct: 97 AALDFE-----PADLV---TISYVL-DELTPASREKVIDNLWAKAAQALVIVEPGTPAGW 147
Query: 232 -MIVDMKDLLIAKKFR 246
+++ ++ LIA F
Sbjct: 148 RRVLEARERLIAAGFH 163
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 29.6 bits (66), Expect = 0.92
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 116 NRLYLFSTGTGIAPFVSVIRD 136
N L L S G+GI PF+SVIR+
Sbjct: 413 NSLILVSGGSGITPFISVIRE 433
>gnl|CDD|163496 TIGR03784, marine_sortase, sortase, marine proteobacterial type.
Members of this protein family are sortase enzymes,
cysteine transpeptidases involved in protein sorting
activities. Members of this family tend to be found in
proteobacteria, rather than in Gram-positive bacteria
where sortases attach proteins to the Gram-positive cell
wall or participate in pilin cross-linking. Many species
with this sortase appear to contain a signal target
sequence, a protein with a Vault protein
inter-alpha-trypsin domain (pfam08487) and a von
Willebrand factor type A domain (pfam00092), encoded by
an adjacent gene. These sortases are designated
subfamily 6 according to Comfort and Clubb (2004).
Length = 174
Score = 29.3 bits (66), Expect = 0.95
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 15/49 (30%)
Query: 87 HLQNIQPGDTILL--------HKKSTGTLVLDA-----LIP--GNRLYL 120
LQ ++PGD I L + T T V+D +P ++L L
Sbjct: 105 FLQELRPGDVIRLQTPDGQWQSYQVTATRVVDESETGLDLPADDSQLVL 153
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 28.6 bits (64), Expect = 1.7
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 14/67 (20%)
Query: 80 EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFST-----------GTGIA 128
++G L + ++PGD++ + K+ G L ++ P ++ ++F GTG+A
Sbjct: 988 DKGTLKEWISALRPGDSVEM--KACGGLRIE-RRPADKQFVFRGHVIRKLALIAGGTGVA 1044
Query: 129 PFVSVIR 135
P + +IR
Sbjct: 1045 PMLQIIR 1051
>gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional.
Length = 343
Score = 28.5 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 ITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS 65
+TRPK+ R F +L L NG RAY + +
Sbjct: 67 LTRPKALRLPPKTFHVLFL-FNG---ERAYCLTA 96
>gnl|CDD|180474 PRK06214, PRK06214, sulfite reductase; Provisional.
Length = 530
Score = 28.1 bits (63), Expect = 2.2
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 82 GPLTTHL-QNIQPGDTI--LLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136
G +T L + + PG + + K L D P + + GTGIAPF + + +
Sbjct: 350 GVASTFLGERLAPGTRVRVYVQKAHGFALPAD---PNTPIIMVGPGTGIAPFRAFLHE 404
>gnl|CDD|184153 PRK13572, PRK13572, anthranilate synthase component I; Provisional.
Length = 435
Score = 28.2 bits (63), Expect = 2.5
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 119 YLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLI 178
+++ T F S+ + E IV + R +E + G E+L
Sbjct: 120 FVYDHVTRKFYFHSL-NNNPEELFNAEKIVEKAKRFEIEEEDG--------GSEVLG-CD 169
Query: 179 GQKLKFYRTVTQ-EDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTM 232
+ +F V + ++Y+Y G + +LS E+ DLSP + I SP M
Sbjct: 170 ADREEFVEMVEKAKEYIYSGDVFQVVLSREYRLKTDLSPFQLYRNLREINPSPYM 224
>gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis.
Length = 825
Score = 27.8 bits (62), Expect = 2.8
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 161 GIDVMHEISQDEILKDLIGQK--LKFYRTVTQ-----EDYLY--KGRITNHILSGEFYRN 211
G D ++E+ + +L D G++ YR T E+ L K + H+L+ E R
Sbjct: 302 GYDFLNEV--NGVLVDAAGEEPLTALYRNFTGRPQDIEETLRRAKRLVLRHLLASEIRRL 359
Query: 212 MDLSPLNPDTDRI 224
L + D
Sbjct: 360 ARLLARLAELDPA 372
>gnl|CDD|107163 PHA02275, PHA02275, hypothetical protein.
Length = 125
Score = 27.8 bits (61), Expect = 3.3
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 144 DEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNH 202
+ ++ C V L+ G+ M +I D +K + R V ++Y + ++H
Sbjct: 63 SDGVIENIC-NVEGLEDGLSKMKKIFDDSNF-----EKHYYNRVVDHDEYYWIDYGSHH 115
>gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional.
Length = 325
Score = 27.6 bits (61), Expect = 3.4
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLE-FF 75
VI I H T LFRF + + F + + + + + +P + + +F
Sbjct: 60 VIPITHDT-ALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYF 118
Query: 76 SIKVEQ---GPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVS 132
I V++ G +T HL + GD +L +S + + + + GTG P +
Sbjct: 119 DIIVKRKKDGLMTNHLFGMHVGDKLLF--RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQ 176
Query: 133 VIRDPGTYEKFDEVIVTQT 151
+IR T E +D V +T
Sbjct: 177 IIRHSLT-EPWDSGEVDRT 194
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system
histidine kinase. This histidine kinase protein is
paired with an adjacent response regulator (TIGR03787)
gene. It co-occurs with a variant sortase enzyme
(TIGR03784), usually in the same gene neighborhood, in
proteobacterial species most of which are marine, and
with an LPXTG motif-containing sortase target conserved
protein (TIGR03788). Sortases and LPXTG proteins are far
more common in Gram-positive bacteria, where sortase
systems mediate attachment to the cell wall or
cross-linking of pilin structures. We give this
predicted sensor histidine kinase the gene symbol psdS,
for Proteobacterial Dedicated Sortase system Sensor
histidine kinase.
Length = 703
Score = 27.4 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 209 YRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIA 242
Y P+T +M GSP +I M D L+
Sbjct: 575 YPPQRFELNIPETPLVMR-GSPELIAQMLDKLVD 607
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 27.7 bits (61), Expect = 3.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 119 YLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGID 163
YL T G PF +++RD ++K I+ + +Q ++ YGID
Sbjct: 462 YLLGTVAGPHPFPAMVRD---FQK----IIGEEAKQQLQDWYGID 499
>gnl|CDD|131920 TIGR02873, spore_ylxY, probable sporulation protein, polysaccharide
deacetylase family. Members of this protein family are
most closely related to TIGR02764, a subset of
polysaccharide deacetylase family proteins found in a
species if and only if the species forms endospores like
those of Bacillus subtilis or Clostridium tetani. This
family is likewise restricted to spore-formers, but is
not universal among them in having sequences with
full-length matches to the model.
Length = 268
Score = 27.5 bits (61), Expect = 4.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 88 LQNIQPGDTILLHKKSTGTLVLDALIPG 115
L I PG +L+H ++ T L+ +I
Sbjct: 225 LSKIHPGAMVLMHPTASSTEGLEEMITI 252
>gnl|CDD|149229 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain.
Length = 148
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 118 LYLFSTGTGIAPFVSVIRD 136
L L + G+GI PF+S++RD
Sbjct: 4 LLLVAGGSGITPFISILRD 22
>gnl|CDD|173143 PRK14680, PRK14680, hypothetical protein; Provisional.
Length = 134
Score = 27.1 bits (60), Expect = 5.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 56 RISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNI 91
R +RA+ A WD F + V Q T L++
Sbjct: 79 RAARAWLAAHDAWDKPCRFDLVCVTQRGATLTLEHY 114
>gnl|CDD|177735 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+).
Length = 360
Score = 26.8 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 142 KFDEVIVTQTCRQVVELQYGIDVM 165
K++E+IV C Q+V DVM
Sbjct: 220 KYNEIIVDNCCMQLVSKPEQFDVM 243
>gnl|CDD|149274 pfam08124, Lyase_8_N, Polysaccharide lyase family 8, N terminal
alpha-helical domain. This family consists of a group
of secreted bacterial lyase enzymes EC:4.2.2.1 capable
of acting on hyaluronan and chondroitin in the
extracellular matrix of host tissues, contributing to
the invasive capacity of the pathogen.
Length = 319
Score = 26.9 bits (60), Expect = 6.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 51 MVNGRRISRAYS 62
MV GR ISRA +
Sbjct: 274 MVRGRSISRANA 285
>gnl|CDD|163406 TIGR03694, exosort_acyl, putative PEP-CTERM/exosortase
system-associated acyltransferase. Members of this
protein family are restricted to bacterial species with
the PEP-CTERM/exosortase system predicted to act in
exopolysaccharide-associated protein targeting.
PSI-BLAST and CDD reveal relationships to the
acyltransferase family that includes N-acyl-L-homoserine
lactone synthetase. Several members of this family may
be found in a single genome. These proteins likely
contribute to chemical modifications in
exopolysaccharide and biofilm structural material
production.
Length = 241
Score = 26.5 bits (59), Expect = 6.6
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 34/91 (37%)
Query: 29 RFCITRPKSFRFRSGE-------------------------FVMLGLMVNGRRISRA--- 60
R ++ K FR R GE + LGL + +S A
Sbjct: 116 RLAVS--KDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGI 173
Query: 61 ---YSMASPCWDDKLEFFSIKVEQ-GPLTTH 87
Y++ P L F I+ Q GP +
Sbjct: 174 THWYAIMEPRLARLLSRFGIQFRQVGPPVDY 204
>gnl|CDD|149225 pfam08021, FAD_binding_9, Siderophore-interacting FAD-binding
domain.
Length = 116
Score = 26.5 bits (59), Expect = 7.6
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 29/111 (26%)
Query: 16 SVISIKHYTDRLFRFCITRPKSFRFRSGEF----------------VMLGLMVNG----- 54
+V+ + + + R T P F S V L +G
Sbjct: 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPG 60
Query: 55 --RRISRAYSMASPCWD-DKLEF---FSIKVEQGPLTTHLQNIQPGDTILL 99
R I R Y++ S +D E F + ++GP + QPGDT+ +
Sbjct: 61 EQRPIMRTYTVRS--FDPAAGELDIDFVLHGDEGPASRWAARAQPGDTLGI 109
>gnl|CDD|118516 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 26.5 bits (58), Expect = 7.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 137 PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIG 179
P YE+ +E + R+ + + GI E S + IL+D
Sbjct: 135 PTEYEETEEEVEEPESREELLKKLGIKEPDEESVEAILEDYFE 177
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.141 0.421
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,390,426
Number of extensions: 281876
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 38
Length of query: 264
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,006,537
Effective search space: 689124364
Effective search space used: 689124364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.5 bits)