BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 546 bits (1408), Expect = e-157, Method: Compositional matrix adjust.
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60
MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA
Sbjct: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60
Query: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120
YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL
Sbjct: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120
Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180
FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ
Sbjct: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180
Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240
KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL
Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240
Query: 241 IAKKFREGSNSRPGTFVVERAFSL 264
IAKKFREGSNSRPGTFVVERAFSL
Sbjct: 241 IAKKFREGSNSRPGTFVVERAFSL 264
>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 395 bits (1014), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/221 (85%), Positives = 204/221 (92%)
Query: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60
MCDVS +L +VYCESVIS+KHYTDRLFRFCITRPKSFRFRSGEFVMLGL+VNGR I RA
Sbjct: 1 MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA 60
Query: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120
YS+ASPC DDKLEF SIKV++G TT+LQNIQPGDTILLHKKSTG L+LD+LIPGNRLYL
Sbjct: 61 YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL 120
Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180
FS GTGIAPF S+IRDP TY+KFDEVI+T TC +V ELQYGIDVMHEISQDEILKDLIGQ
Sbjct: 121 FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ 180
Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDT 221
KLKFYRTVTQEDYLYKGRITNHILSGEFYRNM LSPLNPDT
Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDT 221
>gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 229
Score = 26.6 bits (57), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 67 CWDDKLEFFSIK-VEQGPLT-----THLQNIQPGDTILLHKKSTGTLVLDAL 112
+D++L+F S + VE G ++ + ++ GDT+L HK +VLD L
Sbjct: 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQL 59
>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 25.4 bits (54), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 115 GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVT----QTCRQ 154
GN + L GT I P + IR +++ + + T ++C+Q
Sbjct: 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQ 109
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 24.3 bits (51), Expect = 2.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKG-----RITNHILSGEF--YR 210
+S DEI + FYR+ + D YKG + NH L +F YR
Sbjct: 607 LSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYR 656
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 179 GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMIC 227
G+ K + V +ED + I I + N DLS LNP ++I I
Sbjct: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388
>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Length = 648
Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 107 LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQY------ 160
LVL LIPGNR+ G P S IR G F+++IV +V++ +
Sbjct: 337 LVLCHLIPGNRVNFVLLSRGEDP-DSFIRCYGK-TAFEKLIVESL--PLVDMLWKRETEN 392
Query: 161 -GIDVMHEISQDEI-LKDLIG----QKLKFYRTVTQED---YLYKGRITNHILSGEFYR 210
+ E ++ EI LK+ I QKL++Y + D L++ IT H G +++
Sbjct: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
[Candidatus Liberibacter asiaticus str. psy62]
Length = 581
Score = 22.3 bits (46), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 71 KLEFFSIKVEQGPLTTHLQNIQP 93
KL FF + +Q T +++NIQP
Sbjct: 372 KLLFFPLAKKQYVSTANMKNIQP 394
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.141 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,807
Number of Sequences: 1233
Number of extensions: 7096
Number of successful extensions: 27
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 264
length of database: 328,796
effective HSP length: 72
effective length of query: 192
effective length of database: 240,020
effective search space: 46083840
effective search space used: 46083840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 37 (18.9 bits)