BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] (264 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 546 bits (1408), Expect = e-157, Method: Compositional matrix adjust. Identities = 264/264 (100%), Positives = 264/264 (100%) Query: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA Sbjct: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60 Query: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL Sbjct: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120 Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ Sbjct: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180 Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240 Query: 241 IAKKFREGSNSRPGTFVVERAFSL 264 IAKKFREGSNSRPGTFVVERAFSL Sbjct: 241 IAKKFREGSNSRPGTFVVERAFSL 264 >gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 395 bits (1014), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/221 (85%), Positives = 204/221 (92%) Query: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60 MCDVS +L +VYCESVIS+KHYTDRLFRFCITRPKSFRFRSGEFVMLGL+VNGR I RA Sbjct: 1 MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA 60 Query: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120 YS+ASPC DDKLEF SIKV++G TT+LQNIQPGDTILLHKKSTG L+LD+LIPGNRLYL Sbjct: 61 YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL 120 Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180 FS GTGIAPF S+IRDP TY+KFDEVI+T TC +V ELQYGIDVMHEISQDEILKDLIGQ Sbjct: 121 FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ 180 Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDT 221 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNM LSPLNPDT Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDT 221 >gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 229 Score = 26.6 bits (57), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%) Query: 67 CWDDKLEFFSIK-VEQGPLT-----THLQNIQPGDTILLHKKSTGTLVLDAL 112 +D++L+F S + VE G ++ + ++ GDT+L HK +VLD L Sbjct: 8 AYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQL 59 >gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 25.4 bits (54), Expect = 0.95, Method: Compositional matrix adjust. Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Query: 115 GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVT----QTCRQ 154 GN + L GT I P + IR +++ + + T ++C+Q Sbjct: 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQ 109 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 24.3 bits (51), Expect = 2.2, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Query: 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKG-----RITNHILSGEF--YR 210 +S DEI + FYR+ + D YKG + NH L +F YR Sbjct: 607 LSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYR 656 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 23/49 (46%) Query: 179 GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMIC 227 G+ K + V +ED + I I + N DLS LNP ++I I Sbjct: 340 GRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLSSLNPPLEKIDIA 388 >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 19/119 (15%) Query: 107 LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQY------ 160 LVL LIPGNR+ G P S IR G F+++IV +V++ + Sbjct: 337 LVLCHLIPGNRVNFVLLSRGEDP-DSFIRCYGK-TAFEKLIVESL--PLVDMLWKRETEN 392 Query: 161 -GIDVMHEISQDEI-LKDLIG----QKLKFYRTVTQED---YLYKGRITNHILSGEFYR 210 + E ++ EI LK+ I QKL++Y + D L++ IT H G +++ Sbjct: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 >gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62] Length = 581 Score = 22.3 bits (46), Expect = 8.3, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 71 KLEFFSIKVEQGPLTTHLQNIQP 93 KL FF + +Q T +++NIQP Sbjct: 372 KLLFFPLAKKQYVSTANMKNIQP 394 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.141 0.421 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 169,807 Number of Sequences: 1233 Number of extensions: 7096 Number of successful extensions: 27 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 9 length of query: 264 length of database: 328,796 effective HSP length: 72 effective length of query: 192 effective length of database: 240,020 effective search space: 46083840 effective search space used: 46083840 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 37 (18.9 bits)