HHsearch alignment for GI: 254780364 and conserved domain: COG2871
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion].
Probab=99.94 E-value=3.6e-26 Score=179.89 Aligned_cols=196 Identities=18% Similarity=0.338 Sum_probs=153.9
Q ss_pred CCCCHHCCCCCE-----EEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECCCCCC--------------------
Q ss_conf 544322073421-----1789899847998699998078--9997389857880314586--------------------
Q gi|254780364|r 2 CDVSSELAADVY-----CESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLIVNG-------------------- 54 (224)
Q Consensus 2 ~~~~~~ip~~~~-----~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g-------------------- 54 (224)
T Consensus 119 ~dm~levpEe~fgvkkWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~ 198 (410)
T COG2871 119 HDMDLEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFN 198 (410)
T ss_pred CCCEEECHHHHCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHC
T ss_conf 56225242776074531589970775654555412507999836647886699953873303124679846745335523
Q ss_pred ---------CCEEEEEEECCCCCCCCCEEEEEEE----------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf ---------1105564320566777601799961----------576765310000222221001688753356446768
Q gi|254780364|r 55 ---------RPIFRAYSIASPCRDDKLEFCSIKV----------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPG 115 (224)
Q Consensus 55 ---------~~~~R~ySiaS~p~~~~~~~~i~~~----------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~ 115 (224)
T Consensus 199 lf~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtis-GPfGEfFaKd--td 275 (410)
T COG2871 199 LFRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTIS-GPFGEFFAKD--TD 275 (410)
T ss_pred HHEEECCCCHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEE-CCCHHHHHCC--CC
T ss_conf 10012145368787766414812347479988852799989999941211047850699747983-6614543126--88
Q ss_pred CCEEEEECCCCHHHHHHHHH-HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--C
Q ss_conf 81799965868088999999-86530886338999940586454304888998875332101246875999810578--8
Q gi|254780364|r 116 NRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--D 192 (224)
Q Consensus 116 ~~lvlIAgGtGiaP~~silr-~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~ 192 (224)
T Consensus 276 aemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~p--------NF~wH~aLSdplpE 347 (410)
T COG2871 276 AEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENP--------NFHWHLALSDPLPE 347 (410)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCC
T ss_conf 7369983586767117789999986503652566622007777777877888875389--------81799973688876
Q ss_pred CCCC---CCCHHHHHCCCH
Q ss_conf 7766---721687858606
Q gi|254780364|r 193 YLYK---GRITNHILSGEF 208 (224)
Q Consensus 193 ~~~~---GrIt~~i~~g~l 208 (224)
T Consensus 348 DnW~g~TgFihnv~~en~L 366 (410)
T COG2871 348 DNWDGYTGFIHNVLYENYL 366 (410)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6854421289999876353