HHsearch alignment for GI: 254780364 and conserved domain: COG2871

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion].
Probab=99.94  E-value=3.6e-26  Score=179.89  Aligned_cols=196  Identities=18%  Similarity=0.338  Sum_probs=153.9

Q ss_pred             CCCCHHCCCCCE-----EEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECCCCCC--------------------
Q ss_conf             544322073421-----1789899847998699998078--9997389857880314586--------------------
Q gi|254780364|r    2 CDVSSELAADVY-----CESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLIVNG--------------------   54 (224)
Q Consensus         2 ~~~~~~ip~~~~-----~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g--------------------   54 (224)
T Consensus       119 ~dm~levpEe~fgvkkWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~  198 (410)
T COG2871         119 HDMDLEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFN  198 (410)
T ss_pred             CCCEEECHHHHCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHC
T ss_conf             56225242776074531589970775654555412507999836647886699953873303124679846745335523


Q ss_pred             ---------CCEEEEEEECCCCCCCCCEEEEEEE----------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf             ---------1105564320566777601799961----------576765310000222221001688753356446768
Q gi|254780364|r   55 ---------RPIFRAYSIASPCRDDKLEFCSIKV----------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPG  115 (224)
Q Consensus        55 ---------~~~~R~ySiaS~p~~~~~~~~i~~~----------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~  115 (224)
T Consensus       199 lf~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtis-GPfGEfFaKd--td  275 (410)
T COG2871         199 LFRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTIS-GPFGEFFAKD--TD  275 (410)
T ss_pred             HHEEECCCCHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEE-CCCHHHHHCC--CC
T ss_conf             10012145368787766414812347479988852799989999941211047850699747983-6614543126--88


Q ss_pred             CCEEEEECCCCHHHHHHHHH-HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--C
Q ss_conf             81799965868088999999-86530886338999940586454304888998875332101246875999810578--8
Q gi|254780364|r  116 NRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--D  192 (224)
Q Consensus       116 ~~lvlIAgGtGiaP~~silr-~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~  192 (224)
T Consensus       276 aemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~p--------NF~wH~aLSdplpE  347 (410)
T COG2871         276 AEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENP--------NFHWHLALSDPLPE  347 (410)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCC
T ss_conf             7369983586767117789999986503652566622007777777877888875389--------81799973688876


Q ss_pred             CCCC---CCCHHHHHCCCH
Q ss_conf             7766---721687858606
Q gi|254780364|r  193 YLYK---GRITNHILSGEF  208 (224)
Q Consensus       193 ~~~~---GrIt~~i~~g~l  208 (224)
T Consensus       348 DnW~g~TgFihnv~~en~L  366 (410)
T COG2871         348 DNWDGYTGFIHNVLYENYL  366 (410)
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             6854421289999876353