HHsearch alignment for GI: 254780364 and conserved domain: PRK05464
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional.
Probab=100.00 E-value=1.1e-40 Score=268.68 Aligned_cols=204 Identities=18% Similarity=0.326 Sum_probs=165.5
Q ss_pred CCCHHCCC-----CCEEEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECCCCCC---------------------
Q ss_conf 44322073-----4211789899847998699998078--9997389857880314586---------------------
Q gi|254780364|r 3 DVSSELAA-----DVYCESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLIVNG--------------------- 54 (224)
Q Consensus 3 ~~~~~ip~-----~~~~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g--------------------- 54 (224)
T Consensus 118 dm~i~vp~e~~~vk~we~~Vvsn~nvatfIKEl~l~lp~ge~~~fkaG~yiQi~iP~~~~~~~~~di~~~y~~dW~~~~~ 197 (408)
T PRK05464 118 DMKIELPEEIFGVKKWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWEKFGL 197 (408)
T ss_pred CCEEECCHHHHCCCCEEEEEEECCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 86687477980666358999975652222433689678997452025877999637631464513553777888875482
Q ss_pred --------CCEEEEEEECCCCCCCCCEEEEEEE----------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf --------1105564320566777601799961----------5767653100002222210016887533564467688
Q gi|254780364|r 55 --------RPIFRAYSIASPCRDDKLEFCSIKV----------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGN 116 (224)
Q Consensus 55 --------~~~~R~ySiaS~p~~~~~~~~i~~~----------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~ 116 (224)
T Consensus 198 ~~~~~~~~e~~~RaYSmAn~p~e~~~i~~niRiatpPp~~~~vppG~~Ssyl~~LK~GD~V~is-GP~G~Ffl~d--s~~ 274 (408)
T PRK05464 198 FRLVSKVDEPTIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTIS-GPFGEFFAKD--TDA 274 (408)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE-CCCCCEEECC--CCC
T ss_conf 1110358746553121357867688489999961699887889972211445238999889997-7864427558--998
Q ss_pred CEEEEECCCCHHHHHHHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CC
Q ss_conf 1799965868088999999865-30886338999940586454304888998875332101246875999810578--87
Q gi|254780364|r 117 RLYLFSMGTGIAPFASMIRDPE-TYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DY 193 (224)
Q Consensus 117 ~lvlIAgGtGiaP~~silr~~~-~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~~ 193 (224)
T Consensus 275 ~mVfIaGGtGmAPlrS~I~~~l~~~~~~R~I~l~yGARs~~DL~y~de~~~La~e~p--------NF~y~~aLS~p~~ed 346 (408)
T PRK05464 275 EMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSLREMFYQEDFDQLAAENP--------NFVWHVALSDPLPED 346 (408)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCCC
T ss_conf 779993586667489999999986088875699996476576233799999998789--------957999978889666
Q ss_pred CC---CCCCHHHHHCCCHH----------HHCCCCCC
Q ss_conf 76---67216878586069----------96787978
Q gi|254780364|r 194 LY---KGRITNHILSGEFY----------RNMGLSPL 217 (224)
Q Consensus 194 ~~---~GrIt~~i~~g~l~----------~~~~l~~~ 217 (224)
T Consensus 347 ~W~G~tGfIh~vl~~~yL~dh~~ped~e~YlCGPP~M 383 (408)
T PRK05464 347 NWTGYTGFIHNVLYENYLKDHPAPEDCEYYMCGPPMM 383 (408)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 8888737644699998986378855868999899899