HHsearch alignment for GI: 254780364 and conserved domain: TIGR02160
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=100.00 E-value=4.7e-39 Score=258.74 Aligned_cols=189 Identities=17% Similarity=0.325 Sum_probs=165.2
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCC----CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 2117898998479986999980789----997389857880314586110556432056677760179996157676531
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPK----SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTY 87 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~----~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~ 87 (224)
T Consensus 1 Fh~L~VA~V~r~t~dAv~i~FevP~eL~~~Y~F~pGQ~l~Lk~~~dG~e~RRSYSIC~~~~~~~~rvAvk~~~GG~FS~w 80 (371)
T TIGR02160 1 FHALTVAEVRRLTADAVEISFEVPEELAEDYRFEPGQHLTLKAEVDGEELRRSYSICDAPAPGEIRVAVKKIEGGLFSTW 80 (371)
T ss_pred CCCCCCHHHHCCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEHH
T ss_conf 98752213210571160684147835787504688934554200077411302222167798963388997289711321
Q ss_pred CCC--CCCCCCCEECCCCCCCCCCCCCCC-------------CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 000--022222100168875335644676-------------88179996586808899999986530886338999940
Q gi|254780364|r 88 LQN--IQPGDTILLHKKSTGDLILDSLIP-------------GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTC 152 (224)
Q Consensus 88 l~~--~~~gd~~~~~~~p~g~f~~~~~~~-------------~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~ 152 (224)
T Consensus 81 a~d~Gir~GdtlEVM~-P~G~F~~~~~~~~lndaetiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~N 159 (371)
T TIGR02160 81 ANDEGIRAGDTLEVMA-PQGRFTSKLDAERLNDAETIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGN 159 (371)
T ss_pred HHCCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 1118704488788716-789778888722000256888860689689998178705899999987406995208999617
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC---CCCCCHHHHHCCCHHHHC
Q ss_conf 586454304888998875332101246875999810578877---667216878586069967
Q gi|254780364|r 153 GRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL---YKGRITNHILSGEFYRNM 212 (224)
Q Consensus 153 R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~---~~GrIt~~i~~g~l~~~~ 212 (224)
T Consensus 160 r~~~~vMFa~~L~DLKd~yp-------~Rf~l~~vlSrE~~~~~ll~GRlD----~ekl~~L~ 211 (371)
T TIGR02160 160 RRSASVMFAEELADLKDKYP-------QRFALLHVLSREEREAPLLSGRLD----GEKLRALL 211 (371)
T ss_pred CCCCCHHHHHHHHHHHCCHH-------HHHHHHHHHCCCCCCCCCCCCCCC----HHHHHHHH
T ss_conf 88872778998987631204-------578998663121113641024227----89999885