HHsearch alignment for GI: 254780364 and conserved domain: cd06197
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=1.5e-24 Score=169.93 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=112.6
Q ss_pred EEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCC---C-------------CCEEEEEEECCCCCC----CCCEE
Q ss_conf 89984799869999807899---9738985788031458---6-------------110556432056677----76017
Q gi|254780364|r 18 ISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVN---G-------------RPIFRAYSIASPCRD----DKLEF 74 (224)
Q Consensus 18 ~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~---g-------------~~~~R~ySiaS~p~~----~~~~~ 74 (224)
T Consensus 1 ~kke~ltp~i~~F~f~~~d~~~~~~~~pGQ~itl~~~~~l~~gy~hm~d~~P~slndd~vRtyTiSS~P~~~~~~~~~~I 80 (220)
T cd06197 1 IKSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEI 80 (220)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 96431588701699980897656678996579997665567661440479986456773489886238999887767999
Q ss_pred EEEEECCCCCCCCCCCC-CCC---CCCEECCCCCCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 99961576765310000-222---221001688753356446--76881799965868088999999865308-863389
Q gi|254780364|r 75 CSIKVDKGFFTTYLQNI-QPG---DTILLHKKSTGDLILDSL--IPGNRLYLFSMGTGIAPFASMIRDPETYK-KFDEVI 147 (224)
Q Consensus 75 ~i~~~~~g~~s~~l~~~-~~g---d~~~~~~~p~g~f~~~~~--~~~~~lvlIAgGtGiaP~~silr~~~~~~-~~~~i~ 147 (224)
T Consensus 81 tvk~--~G~vS~~Lh~~~~~g~~~g~~~p~~G~~G~F~l~~~~~~~~~~~~~~~~g~gitp~~~~~~~~~~~~~~~~~v~ 158 (220)
T cd06197 81 TVRK--KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDIT 158 (220)
T ss_pred EEEE--CCCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 9987--88436889875652577643777553776657236777767734898246666608999999874557787689
Q ss_pred EEEECCCHHHHHHHHHHHHHH
Q ss_conf 999405864543048889988
Q gi|254780364|r 148 ITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 148 l~~g~R~~~dl~~~~el~~l~ 168 (224)
T Consensus 159 l~~s~r~~d~~~~~d~l~~~p 179 (220)
T cd06197 159 LLWSLREDDLPLVMDTLVRFP 179 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999356410467999874364