HHsearch alignment for GI: 254780364 and conserved domain: cd06198
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.8e-34 Score=230.71 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=130.9
Q ss_pred EECCCCEEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCC-CCCCCCC
Q ss_conf 8479986999980789-99738985788031458611055643205667776-0179996157676531000-0222221
Q gi|254780364|r 21 KHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDK-LEFCSIKVDKGFFTTYLQN-IQPGDTI 97 (224)
Q Consensus 21 ~~~T~~~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~-~~~~i~~~~~g~~s~~l~~-~~~gd~~ 97 (224)
T Consensus 3 ~~et~d~~t~~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~r~ySias~p~~~~~l~l~Ik~~--G~~S~~l~~~l~~Gd~v 80 (216)
T cd06198 3 VTEVRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKPGTRV 80 (216)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEC--CCCHHHHHHCCCCCCEE
T ss_conf 6667980899998699888929998189997579928887688213899999799999972--75124487559999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 00168875335644676881799965868088999999865308863389999405864543048889988753321012
Q gi|254780364|r 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL 177 (224)
Q Consensus 98 ~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~ 177 (224)
T Consensus 81 ~i-~gP~G~f~l~~--~~~~~vliAgGtGIaP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~------ 151 (216)
T cd06198 81 TV-EGPYGRFTFDD--RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAA------ 151 (216)
T ss_pred EE-ECCCCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC------
T ss_conf 99-62556871247--8998899975767770999999999759998489999469978968899999999765------
Q ss_pred CCCCEEEEEEECCCC
Q ss_conf 468759998105788
Q gi|254780364|r 178 IGQKLKFYRTVTQED 192 (224)
Q Consensus 178 ~~~~~~~~~~isre~ 192 (224)
T Consensus 152 ---~~~~~~~~~~~~ 163 (216)
T cd06198 152 ---GVVLHVIDSPSD 163 (216)
T ss_pred ---CCEEEEEECCCC
T ss_conf ---978999607987