HHsearch alignment for GI: 254780364 and conserved domain: cd06198

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00  E-value=1.8e-34  Score=230.71  Aligned_cols=158  Identities=16%  Similarity=0.231  Sum_probs=130.9

Q ss_pred             EECCCCEEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCC-CCCCCCC
Q ss_conf             8479986999980789-99738985788031458611055643205667776-0179996157676531000-0222221
Q gi|254780364|r   21 KHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDK-LEFCSIKVDKGFFTTYLQN-IQPGDTI   97 (224)
Q Consensus        21 ~~~T~~~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~-~~~~i~~~~~g~~s~~l~~-~~~gd~~   97 (224)
T Consensus         3 ~~et~d~~t~~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~r~ySias~p~~~~~l~l~Ik~~--G~~S~~l~~~l~~Gd~v   80 (216)
T cd06198           3 VTEVRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKPGTRV   80 (216)
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEC--CCCHHHHHHCCCCCCEE
T ss_conf             6667980899998699888929998189997579928887688213899999799999972--75124487559999999


Q ss_pred             EECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             00168875335644676881799965868088999999865308863389999405864543048889988753321012
Q gi|254780364|r   98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL  177 (224)
Q Consensus        98 ~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~  177 (224)
T Consensus        81 ~i-~gP~G~f~l~~--~~~~~vliAgGtGIaP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~------  151 (216)
T cd06198          81 TV-EGPYGRFTFDD--RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAA------  151 (216)
T ss_pred             EE-ECCCCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC------
T ss_conf             99-62556871247--8998899975767770999999999759998489999469978968899999999765------


Q ss_pred             CCCCEEEEEEECCCC
Q ss_conf             468759998105788
Q gi|254780364|r  178 IGQKLKFYRTVTQED  192 (224)
Q Consensus       178 ~~~~~~~~~~isre~  192 (224)
T Consensus       152 ---~~~~~~~~~~~~  163 (216)
T cd06198         152 ---GVVLHVIDSPSD  163 (216)
T ss_pred             ---CCEEEEEECCCC
T ss_conf             ---978999607987