HHsearch alignment for GI: 254780364 and conserved domain: cd06202
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.82 E-value=2.6e-19 Score=137.92 Aligned_cols=139 Identities=23% Similarity=0.353 Sum_probs=101.0
Q ss_pred CEEEEEEECCCCCC--CCCEEEE--EEE---------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 10556432056677--7601799--961---------5767653100002222210016887533564467688179996
Q gi|254780364|r 56 PIFRAYSIASPCRD--DKLEFCS--IKV---------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFS 122 (224)
Q Consensus 56 ~~~R~ySiaS~p~~--~~~~~~i--~~~---------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIA 122 (224)
T Consensus 175 l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~~~~r~GlcS~~L~~l~~g~~v~~~vr~~~~F~lP~d-~~~PiImIg 253 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPED-PSVPVIMVG 253 (406)
T ss_pred CCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEECCCCCCCCCC-CCCCEEEEE
T ss_conf 6860267516866799879999999986647888745530110777558997989999947987889888-999879980
Q ss_pred CCCCHHHHHHHHHHHH--------HCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCC
Q ss_conf 5868088999999865--------308863389999405864-54304888998875332101246875-9998105788
Q gi|254780364|r 123 MGTGIAPFASMIRDPE--------TYKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQED 192 (224)
Q Consensus 123 gGtGiaP~~silr~~~--------~~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~-~~~~~isre~ 192 (224)
T Consensus 254 ~GTGiAPFR~FlqeR~~~~~~~~~~~~~~G~~~LffGcR~~~~D~ly~~El~~~~~~g---------~l~~l~~AfSRd~ 324 (406)
T cd06202 254 PGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG---------VLTEVYTALSREP 324 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC---------CCCEEEEEEECCC
T ss_conf 7877177899999999988755421688787599960787532255899999998759---------8505899875479
Q ss_pred CCCCCCCHHHHH
Q ss_conf 776672168785
Q gi|254780364|r 193 YLYKGRITNHIL 204 (224)
Q Consensus 193 ~~~~GrIt~~i~ 204 (224)
T Consensus 325 ~~~k~YVQd~i~ 336 (406)
T cd06202 325 GKPKTYVQDLLK 336 (406)
T ss_pred CCCCCCHHHHHH
T ss_conf 989874689999