>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

Probab=100.00 E-value=6.7e-43 Score=282.29 Aligned_cols=183 Identities=22% Similarity=0.382 Sum_probs=161.6 Q ss_pred CEEEEEEEEEECCCCEEEEEEECCCC----CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCC Q ss_conf 21178989984799869999807899----97389857880314586110556432056677760179996157676531 Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPKS----FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTY 87 (224) Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~~----~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~ 87 (224) T Consensus 1 f~p~~V~~i~~et~dv~~~~l~~p~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~i~Vk~~~~G~~S~~ 80 (241) T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNW 80 (241) T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCHH T ss_conf 92029999999799919999983887666889799968999973299687433340467999979999999879970478 Q ss_pred CCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH Q ss_conf 000-0222221001688753356446768817999658680889999998653088633899994058645430488899 Q gi|254780364|r 88 LQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH 166 (224) Q Consensus 88 l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~ 166 (224) T Consensus 81 l~~~l~~Gd~v~v-~gP~G~f~~~~~~~~~~lvliAgG~GitP~~sml~~~l~~~~~~~v~l~~g~r~~~d~~~~~el~~ 159 (241) T cd06214 81 ANDELKAGDTLEV-MPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASVIFREELAD 159 (241) T ss_pred HHHCCCCCCEEEE-ECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 8841899999997-657577240677788619999568751849999999997499983899980799799788999999 Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCC---CCCCCHHH Q ss_conf 8875332101246875999810578877---66721687 Q gi|254780364|r 167 EISQDEILKDLIGQKLKFYRTVTQEDYL---YKGRITNH 202 (224) Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~isre~~~---~~GrIt~~ 202 (224) T Consensus 160 l~~~~~-------~~~~~~~~~s~~~~~~~~~~Gri~~~ 191 (241) T cd06214 160 LKARYP-------DRLTVIHVLSREQGDPDLLRGRLDAA 191 (241) T ss_pred HHHHCC-------CCEEEEEEECCCCCCCCCCCCCCCHH T ss_conf 998677-------97899999888998876656753899

HHsearch alignment for GI: 254780364 and conserved domain: cd06214