HHsearch alignment for GI: 254780364 and conserved domain: cd06217

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00  E-value=3.4e-40  Score=265.71  Aligned_cols=181  Identities=23%  Similarity=0.315  Sum_probs=155.7

Q ss_pred             CEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCC-CCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCC
Q ss_conf             2117898998479986999980789--9973898578803145-861105564320566777-60179996157676531
Q gi|254780364|r   12 VYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIV-NGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTY   87 (224)
Q Consensus        12 ~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~-~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~   87 (224)
T Consensus         1 wr~~~V~~v~~~t~~i~~~~l~~~~~~~~~f~pGQ~v~l~~~~~~g~~~~R~ySi~s~p~~~~~~~~~vk~~~~G~~s~~   80 (235)
T cd06217           1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY   80 (235)
T ss_pred             CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHH
T ss_conf             91379999999389959999986899989808980199999757991867777306689999889999998999927889


Q ss_pred             CCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             000-0222221001688753356446768817999658680889999998653088633899994058645430488899
Q gi|254780364|r   88 LQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH  166 (224)
Q Consensus        88 l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~  166 (224)
T Consensus        81 l~~~l~~Gd~v~v-~gP~G~f~~~~~-~~~~~llIAgG~GItP~~s~l~~~~~~~~~~~i~l~~g~r~~~d~~~~~el~~  158 (235)
T cd06217          81 LHDEVKVGDLLEV-RGPIGTFTWNPL-HGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAEDVIFRDELEQ  158 (235)
T ss_pred             HHHHCCCCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             9862659974999-725116422777-89858999458775769999999997099973899972599799666999999


Q ss_pred             HHHHHHHHCCCCCCCEEEEEEECCCCC-C---CCCCCHHH
Q ss_conf             887533210124687599981057887-7---66721687
Q gi|254780364|r  167 EISQDEILKDLIGQKLKFYRTVTQEDY-L---YKGRITNH  202 (224)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~isre~~-~---~~GrIt~~  202 (224)
T Consensus       159 l~~~~~--------~~~~~~~~s~~~~~~~~g~~g~i~~~  190 (235)
T cd06217         159 LARRHP--------NLHVTEALTRAAPADWLGPAGRITAD  190 (235)
T ss_pred             HHHHCC--------CEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             997689--------97999997567756656876762899