HHsearch alignment for GI: 254780364 and conserved domain: cd06218
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=3.4e-29 Score=198.39 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=133.4
Q ss_pred EEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCC-EEEEEEECCCCC-CCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 989984799869999807899-9738985788031458611-055643205667-7760179996157676531000022
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRP-IFRAYSIASPCR-DDKLEFCSIKVDKGFFTTYLQNIQP 93 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~-~~R~ySiaS~p~-~~~~~~~i~~~~~g~~s~~l~~~~~ 93 (224)
T Consensus 1 Iv~~~~l~~~~~~l~l~~p~~a~~~~PGQFv~v~~~~~~~~~l~rP~Si~~~~~~~~~l~~~v~~v--G~~T~~l~~l~~ 78 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRLLSELKA 78 (246)
T ss_pred CEEEEEECCCEEEEEEECCCHHHCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEE--CHHHHHHHCCCC
T ss_conf 965699349979999976874315899835999968999731214169840158999999999994--826889961899
Q ss_pred CCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2221001688753-356446768817999658680889999998653088633899994058645430488899887533
Q gi|254780364|r 94 GDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 94 gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
T Consensus 79 Gd~v~v~-GP~G~~f~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~~i~G~r~~~~l~~~~el~~~~~--- 150 (246)
T cd06218 79 GDELDVL-GPLGNGFDLPD--DDGKVLLVGGGIGIAPLLFLAKQLAERG--IKVTVLLGFRSADDLFLVEEFEALGA--- 150 (246)
T ss_pred CCEEEEE-ECCCCCEECCC--CCCCEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHHHHCC---
T ss_conf 7989999-53578567447--8972999965731543999999999749--92899997477688544999997379---
Q ss_pred HHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 210124687599981057887766721687858
Q gi|254780364|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS 205 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~ 205 (224)
T Consensus 151 --------~v--~i~tdDGs~G~~G~vtd~l~~ 173 (246)
T cd06218 151 --------EV--YVATDDGSAGTKGFVTDLLKE 173 (246)
T ss_pred --------CE--EEEECCCCCCCEEEHHHHHHH
T ss_conf --------29--999478999733654798986