Query gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 224
No_of_seqs 141 out of 2706
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 15:32:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780364.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10926 ferredoxin-NADP reduc 100.0 0 0 345.1 20.5 205 9-222 1-207 (248)
2 cd06195 FNR1 Ferredoxin-NADP+ 100.0 0 0 318.3 19.2 194 16-216 1-197 (241)
3 PRK11872 antC anthranilate dio 100.0 3.9E-44 0 289.9 16.1 196 9-217 103-312 (340)
4 cd06214 PA_degradation_oxidore 100.0 6.7E-43 0 282.3 19.8 183 12-202 1-191 (241)
5 cd06188 NADH_quinone_reductase 100.0 4.6E-43 0 283.3 18.5 189 5-204 2-237 (283)
6 PRK07609 CDP-6-deoxy-delta-3,4 100.0 2.4E-42 0 278.9 19.5 199 6-217 96-308 (337)
7 PRK08051 fre FMN reductase; Va 100.0 9.1E-43 0 281.5 16.7 193 12-217 2-205 (232)
8 cd06184 flavohem_like_fad_nad_ 100.0 5.6E-41 1.4E-45 270.5 19.2 182 10-201 4-198 (247)
9 cd06209 BenDO_FAD_NAD Benzoate 100.0 3.7E-41 1.4E-45 271.6 16.7 193 12-217 1-204 (228)
10 cd06213 oxygenase_e_transfer_s 100.0 2.4E-41 0 272.8 15.5 194 13-218 1-205 (227)
11 cd06212 monooxygenase_like The 100.0 4.2E-40 1.1E-44 265.2 19.0 180 13-204 1-189 (232)
12 cd06189 flavin_oxioreductase N 100.0 3.5E-40 8.4E-45 265.6 18.4 177 15-204 1-182 (224)
13 cd06215 FNR_iron_sulfur_bindin 100.0 2.8E-40 7E-45 266.3 17.6 179 15-203 1-188 (231)
14 PRK05464 Na(+)-translocating N 100.0 1.1E-40 2.8E-45 268.7 14.9 204 3-217 118-383 (408)
15 cd06187 O2ase_reductase_like T 100.0 5.2E-40 1.3E-44 264.6 17.6 190 17-217 1-201 (224)
16 cd06211 phenol_2-monooxygenase 100.0 1E-39 2.5E-44 262.8 18.7 185 8-204 2-195 (238)
17 cd06217 FNR_iron_sulfur_bindin 100.0 3.4E-40 8.4E-45 265.7 16.0 181 12-202 1-190 (235)
18 cd06216 FNR_iron_sulfur_bindin 100.0 1.2E-39 3.1E-44 262.4 18.5 200 6-217 11-221 (243)
19 cd06210 MMO_FAD_NAD_binding Me 100.0 2.4E-39 6E-44 260.6 18.6 179 13-203 2-191 (236)
20 PRK10684 HCP oxidoreductase, N 100.0 4E-39 1E-43 259.2 18.9 184 7-201 3-192 (335)
21 cd06194 FNR_N-term_Iron_sulfur 100.0 1E-39 2.5E-44 262.8 15.5 189 17-217 1-198 (222)
22 cd06191 FNR_iron_sulfur_bindin 100.0 2E-39 5.2E-44 261.0 16.8 169 15-193 1-172 (231)
23 PRK13289 nitric oxide dioxygen 100.0 8.3E-39 2.1E-43 257.2 18.4 181 11-201 153-347 (399)
24 COG1018 Hmp Flavodoxin reducta 100.0 9.4E-39 2.4E-43 256.9 18.3 161 9-173 2-166 (266)
25 cd06183 cyt_b5_reduct_like Cyt 100.0 6.2E-39 1.6E-43 258.0 16.9 180 16-203 2-189 (234)
26 PRK05713 hypothetical protein; 100.0 7.9E-39 2E-43 257.4 16.5 172 9-191 88-260 (312)
27 cd06190 T4MO_e_transfer_like T 100.0 2.1E-38 5.4E-43 254.7 17.6 189 17-217 1-207 (232)
28 cd06196 FNR_like_1 Ferredoxin 100.0 1.8E-38 4.6E-43 255.2 15.3 186 14-217 2-197 (218)
29 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 4.7E-39 1.2E-43 258.7 10.0 189 12-212 1-211 (371)
30 cd00322 FNR_like Ferredoxin re 100.0 9.4E-37 2.4E-41 244.7 18.0 170 18-197 1-171 (223)
31 cd06221 sulfite_reductase_like 100.0 7.5E-37 1.9E-41 245.2 16.4 185 17-217 1-201 (253)
32 cd06198 FNR_like_3 NAD(P) bind 100.0 1.8E-34 4.6E-39 230.7 16.4 158 21-192 3-163 (216)
33 cd06185 PDR_like Phthalate dio 100.0 9.9E-34 2.5E-38 226.2 13.6 145 18-170 1-151 (211)
34 cd06208 CYPOR_like_FNR These f 100.0 3.1E-31 7.9E-36 210.9 18.5 189 9-205 5-226 (286)
35 PTZ00319 NADH-cytochrome B5 re 100.0 4.1E-31 1E-35 210.1 17.5 185 9-203 32-253 (303)
36 PRK08221 anaerobic sulfite red 100.0 4.3E-31 1.1E-35 210.0 16.1 172 13-205 8-184 (263)
37 KOG0534 consensus 100.0 1.2E-30 3.1E-35 207.2 17.7 183 11-202 50-240 (286)
38 PRK08345 cytochrome-c3 hydroge 100.0 2.3E-31 5.9E-36 211.6 13.7 174 11-198 7-189 (292)
39 COG0543 UbiB 2-polyprenylpheno 100.0 1.3E-29 3.4E-34 200.9 17.5 174 14-204 9-185 (252)
40 TIGR01941 nqrF NADH:ubiquinone 100.0 3E-30 7.6E-35 204.9 13.9 199 2-211 114-384 (425)
41 PTZ00274 cytochrome b5 reducta 100.0 1.6E-29 4.2E-34 200.3 16.6 185 10-203 50-251 (325)
42 cd06218 DHOD_e_trans FAD/NAD b 100.0 3.4E-29 8.6E-34 198.4 16.0 169 17-205 1-173 (246)
43 cd06220 DHOD_e_trans_like2 FAD 100.0 1.2E-28 3.2E-33 194.9 16.0 160 15-204 1-160 (233)
44 PRK00054 dihydroorotate dehydr 100.0 4.3E-28 1.1E-32 191.6 16.1 171 11-205 3-174 (248)
45 cd06201 SiR_like2 Cytochrome p 99.9 1.4E-26 3.5E-31 182.5 16.2 179 9-204 42-232 (289)
46 cd06192 DHOD_e_trans_like FAD/ 99.9 1.6E-26 4E-31 182.1 14.7 168 17-204 1-171 (243)
47 TIGR03224 benzo_boxA benzoyl-C 99.9 7.7E-26 2E-30 177.9 17.0 188 13-211 143-358 (411)
48 PRK06222 ferredoxin-NADP(+) re 99.9 2.3E-26 5.9E-31 181.0 14.0 168 16-204 3-172 (281)
49 cd06200 SiR_like1 Cytochrome p 99.9 8E-26 2E-30 177.7 15.8 175 16-204 2-189 (245)
50 cd06219 DHOD_e_trans_like1 FAD 99.9 8.2E-26 2.1E-30 177.7 15.0 166 16-204 2-171 (248)
51 COG2871 NqrF Na+-transporting 99.9 3.6E-26 9.1E-31 179.9 11.2 196 2-208 119-366 (410)
52 cd06182 CYPOR_like NADPH cytoc 99.9 8.6E-25 2.2E-29 171.4 16.0 176 18-204 3-201 (267)
53 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.5E-24 3.9E-29 169.9 12.2 149 18-168 1-179 (220)
54 COG4097 Predicted ferric reduc 99.9 1.5E-24 3.9E-29 169.9 11.7 158 10-172 213-372 (438)
55 cd06186 NOX_Duox_like_FAD_NADP 99.9 1.9E-23 4.9E-28 163.2 14.4 145 20-167 4-163 (210)
56 TIGR02911 sulfite_red_B sulfit 99.9 1.5E-23 3.8E-28 163.9 12.8 176 14-209 7-186 (261)
57 PRK12778 putative bifunctional 99.9 3.4E-22 8.8E-27 155.5 12.3 168 16-204 3-172 (760)
58 cd06206 bifunctional_CYPOR The 99.9 6E-21 1.5E-25 147.9 16.4 138 57-204 160-315 (384)
59 PRK12779 putative bifunctional 99.9 2.8E-21 7.3E-26 149.9 9.9 184 12-204 648-833 (944)
60 cd06199 SiR Cytochrome p450- l 99.8 1.2E-19 3.1E-24 139.9 12.2 138 57-204 145-294 (360)
61 PRK12775 putative trifunctiona 99.8 1.3E-19 3.3E-24 139.7 11.0 169 16-204 3-173 (993)
62 COG0369 CysJ Sulfite reductase 99.8 1E-19 2.6E-24 140.3 10.5 202 9-220 218-549 (587)
63 cd06203 methionine_synthase_re 99.8 2.5E-19 6.3E-24 138.0 12.1 141 56-204 172-331 (398)
64 cd06202 Nitric_oxide_synthase 99.8 2.6E-19 6.5E-24 137.9 12.1 139 56-204 175-336 (406)
65 cd06207 CyPoR_like NADPH cytoc 99.8 2.9E-19 7.4E-24 137.6 11.5 138 57-205 163-316 (382)
66 PRK10953 cysJ sulfite reductas 99.8 4.6E-19 1.2E-23 136.4 11.4 137 58-204 385-533 (599)
67 pfam00970 FAD_binding_6 Oxidor 99.8 2.6E-18 6.7E-23 131.7 8.9 95 14-109 1-99 (99)
68 cd06204 CYPOR NADPH cytochrome 99.8 8.8E-18 2.2E-22 128.5 10.6 137 57-204 177-350 (416)
69 KOG0039 consensus 99.7 3.5E-17 9E-22 124.8 12.7 155 12-169 354-536 (646)
70 KOG1158 consensus 99.7 1.4E-17 3.6E-22 127.2 9.6 139 56-204 420-578 (645)
71 PRK06214 sulfite reductase; Pr 99.7 3.8E-17 9.7E-22 124.6 11.6 182 12-203 175-470 (537)
72 pfam00175 NAD_binding_1 Oxidor 99.7 8.7E-17 2.2E-21 122.4 5.2 77 120-204 1-79 (106)
73 PTZ00306 NADH-dependent fumara 99.6 3.2E-14 8.1E-19 106.7 15.7 176 28-213 933-1124(1167)
74 TIGR01931 cysJ sulfite reducta 99.6 4.2E-16 1.1E-20 118.2 5.8 131 35-170 395-537 (628)
75 KOG3378 consensus 99.6 1.2E-15 3.1E-20 115.4 7.4 138 8-145 145-292 (385)
76 KOG1159 consensus 99.5 8.7E-14 2.2E-18 104.1 7.7 121 58-193 368-498 (574)
77 PRK06567 putative bifunctional 99.3 1.5E-11 3.9E-16 90.3 11.1 122 11-136 809-934 (1048)
78 PRK05802 hypothetical protein; 99.1 2.6E-09 6.5E-14 76.7 12.2 157 8-167 61-223 (328)
79 pfam08022 FAD_binding_8 FAD-bi 99.0 2.9E-09 7.3E-14 76.4 7.6 87 18-106 7-101 (103)
80 cd06193 siderophore_interactin 98.9 3.8E-08 9.7E-13 69.5 11.8 137 17-159 1-161 (235)
81 COG2375 ViuB Siderophore-inter 98.8 4.5E-07 1.1E-11 63.0 13.5 147 6-158 11-183 (265)
82 pfam08030 NAD_binding_6 Ferric 98.7 1.5E-07 3.8E-12 65.9 9.2 55 116-170 2-60 (148)
83 pfam08021 FAD_binding_9 Sidero 98.2 6E-06 1.5E-10 56.1 7.2 91 16-107 1-116 (116)
84 PRK12446 N-acetylglucosaminyl 85.9 1.5 3.9E-05 23.0 4.5 19 114-132 183-201 (352)
85 TIGR01133 murG undecaprenyldip 84.4 1.7 4.4E-05 22.7 4.2 33 116-148 6-39 (368)
86 PRK00726 murG N-acetylglucosam 83.2 2.5 6.4E-05 21.6 4.7 42 115-156 181-224 (359)
87 pfam00667 FAD_binding_1 FAD bi 82.8 2.1 5.4E-05 22.1 4.2 53 10-62 5-63 (217)
88 TIGR01181 dTDP_gluc_dehyt dTDP 79.8 4 0.0001 20.4 4.7 30 138-167 241-270 (340)
89 cd03785 GT1_MurG MurG is an N- 78.3 4.3 0.00011 20.2 4.5 42 114-155 179-221 (350)
90 TIGR02667 moaB_proteo molybden 68.6 2 5.1E-05 22.2 0.8 42 85-129 35-77 (163)
91 TIGR01890 N-Ac-Glu-synth amino 68.4 4.3 0.00011 20.2 2.5 26 133-158 37-63 (439)
92 TIGR02640 gas_vesic_GvpN gas v 65.3 6.2 0.00016 19.2 2.8 80 114-207 20-107 (265)
93 PRK01581 speE spermidine synth 63.7 11 0.00028 17.7 4.9 49 115-177 140-188 (363)
94 PRK13608 diacylglycerol glucos 57.1 14 0.00037 17.0 7.2 49 115-167 201-251 (391)
95 COG0707 MurG UDP-N-acetylgluco 57.1 14 0.00037 17.0 4.6 41 115-156 182-223 (357)
96 COG1691 NCAIR mutase (PurE)-re 56.2 6.4 0.00016 19.2 1.6 17 122-138 209-225 (254)
97 pfam03033 Glyco_transf_28 Glyc 54.4 12 0.0003 17.6 2.7 29 118-148 1-31 (136)
98 PRK03612 spermidine synthase; 53.1 17 0.00043 16.6 5.3 44 115-172 294-337 (516)
99 TIGR01826 CofD_related conserv 53.0 9.9 0.00025 18.0 2.1 19 116-134 191-209 (331)
100 pfam08877 MepB MepB protein. M 52.9 17 0.00043 16.6 4.7 50 24-82 15-65 (123)
101 TIGR00065 ftsZ cell division p 51.6 12 0.00031 17.5 2.4 26 111-136 102-134 (365)
102 COG0521 MoaB Molybdopterin bio 50.7 6.2 0.00016 19.3 0.8 15 116-130 68-82 (169)
103 COG0391 Uncharacterized conser 50.1 17 0.00043 16.6 2.9 53 115-168 189-251 (323)
104 PRK13609 diacylglycerol glucos 48.1 20 0.00051 16.1 6.7 52 116-172 203-255 (388)
105 KOG3141 consensus 45.0 13 0.00032 17.4 1.6 12 39-50 162-173 (310)
106 PRK09417 mogA molybdenum cofac 44.3 8.8 0.00022 18.3 0.7 15 115-129 66-80 (192)
107 COG3837 Uncharacterized conser 44.1 21 0.00053 16.0 2.6 92 70-168 40-135 (161)
108 TIGR02026 BchE magnesium-proto 41.6 12 0.00031 17.4 1.1 62 95-156 39-106 (506)
109 cd07044 CofD_YvcK Family of Co 41.2 19 0.00049 16.2 2.1 19 115-133 174-192 (309)
110 PRK09330 cell division protein 40.7 21 0.00055 15.9 2.3 24 113-136 94-124 (387)
111 TIGR00382 clpX ATP-dependent C 40.0 20 0.00052 16.1 2.0 79 75-158 237-318 (452)
112 PRK09783 copper/silver efflux 39.8 27 0.00069 15.3 5.8 34 17-52 235-270 (407)
113 cd00886 MogA_MoaB MogA_MoaB fa 37.3 13 0.00033 17.3 0.7 15 115-129 61-75 (152)
114 PRK03604 moaC bifunctional mol 37.1 17 0.00043 16.6 1.3 15 115-129 205-219 (301)
115 cd05197 GH4_glycoside_hydrolas 36.6 30 0.00078 15.0 5.5 11 25-35 135-145 (425)
116 PRK07574 formate dehydrogenase 36.3 31 0.00078 15.0 3.0 19 30-48 35-53 (385)
117 pfam02606 LpxK Tetraacyldisacc 36.3 31 0.00078 15.0 3.8 23 114-136 220-242 (318)
118 PRK08384 thiamine biosynthesis 35.9 31 0.0008 14.9 8.7 74 100-187 168-241 (310)
119 pfam01933 UPF0052 Uncharacteri 35.4 27 0.00069 15.3 2.1 20 115-134 172-191 (291)
120 PRK10310 galactitol-specific P 34.9 23 0.00059 15.7 1.7 34 117-151 3-39 (94)
121 cd07187 YvcK_like family of mo 34.7 27 0.00069 15.3 2.0 44 115-158 175-223 (308)
122 cd07186 CofD_like LPPG:FO 2-ph 34.1 33 0.00085 14.8 2.9 20 115-134 183-202 (303)
123 pfam00551 Formyl_trans_N Formy 33.6 34 0.00087 14.7 5.7 37 118-155 3-39 (181)
124 PRK13606 LPPG:FO 2-phospho-L-l 33.3 34 0.00088 14.7 3.2 20 115-134 186-205 (309)
125 PRK00652 lpxK tetraacyldisacch 32.9 35 0.00089 14.6 4.0 23 114-136 229-251 (334)
126 TIGR01861 ANFD nitrogenase iro 32.6 16 0.00041 16.7 0.6 66 117-192 275-341 (516)
127 TIGR00075 hypD hydrogenase exp 30.0 20 0.00052 16.1 0.7 117 14-134 38-164 (384)
128 CHL00143 rpl3 ribosomal protei 28.8 41 0.001 14.2 2.5 26 27-52 80-114 (207)
129 cd02203 PurL_repeat1 PurL subu 26.8 42 0.0011 14.2 1.9 54 101-157 111-164 (313)
130 TIGR00232 tktlase_bact transke 26.7 45 0.0011 14.0 4.4 43 105-147 548-590 (675)
131 KOG4576 consensus 26.0 44 0.0011 14.0 1.8 43 92-135 92-137 (167)
132 pfam04489 DUF570 Protein of un 25.2 48 0.0012 13.8 4.7 16 32-47 91-106 (422)
133 COG1465 Predicted alternative 25.1 48 0.0012 13.8 7.0 106 11-123 198-316 (376)
134 PRK13201 ureB urease subunit b 24.9 40 0.001 14.3 1.5 11 39-49 70-80 (133)
135 COG0409 HypD Hydrogenase matur 24.5 23 0.00059 15.7 0.2 107 24-132 40-150 (364)
136 COG3252 Methenyltetrahydrometh 24.3 13 0.00034 17.2 -1.1 67 104-173 186-253 (314)
137 PRK13192 bifunctional urease s 24.0 39 0.001 14.3 1.3 24 24-47 87-117 (208)
138 pfam01924 HypD Hydrogenase for 23.9 50 0.0013 13.7 3.4 125 24-153 32-163 (355)
139 cd05566 PTS_IIB_galactitol PTS 23.6 42 0.0011 14.2 1.4 31 119-150 3-36 (89)
140 PRK05753 nucleoside diphosphat 23.5 51 0.0013 13.6 2.7 83 7-106 34-116 (135)
141 PRK13986 urease subunit alpha; 23.1 42 0.0011 14.2 1.3 24 24-47 88-113 (225)
142 cd04710 BAH_fungalPHD BAH, or 23.0 53 0.0013 13.6 2.7 30 31-64 3-32 (135)
143 COG5440 Uncharacterized conser 22.4 54 0.0014 13.5 2.4 18 114-131 51-68 (161)
144 PRK13198 ureB urease subunit b 21.9 55 0.0014 13.4 1.7 10 39-48 28-37 (158)
145 COG4187 RocB Arginine degradat 21.4 57 0.0014 13.4 5.9 58 124-190 142-204 (553)
146 PRK13018 cell division protein 21.2 57 0.0015 13.3 2.3 24 113-136 109-139 (387)
147 COG2129 Predicted phosphoester 21.1 57 0.0015 13.3 2.9 36 116-151 98-146 (226)
148 TIGR02299 HpaE 5-carboxymethyl 20.2 40 0.001 14.3 0.7 45 124-169 223-267 (494)
No 1
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=0 Score=345.05 Aligned_cols=205 Identities=28% Similarity=0.502 Sum_probs=190.9
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 73421178989984799869999807899973898578803145861105564320566777601799961576765310
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYL 88 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l 88 (224)
+++++++||++++++|+++++|+++.|.. +|+||||++|+++.+|+.++|+|||||+|.++.++|+++++++|.+|++|
T Consensus 1 m~~~~~~~V~~v~~~T~~~~sl~~~~p~~-~F~~GQy~~l~~~i~g~~v~R~YSi~s~P~~~~lef~i~~v~~G~~S~~L 79 (248)
T PRK10926 1 MADWVTGKVTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPNLEFYLVTVPEGKLSPRL 79 (248)
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHH
T ss_conf 99876408999864489749999968988-85899707986643990664001111489999569999990798536889
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 00022222100168875335644676881799965868088999999865308863389999405864543048889988
Q gi|254780364|r 89 QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 89 ~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~ 168 (224)
+++++||++.+.++|+|+|.+++.+++++++||||||||||++|||++.+..++.++|+|+||+|+.+|++|++|+++|+
T Consensus 80 ~~l~~Gd~v~~~~~~~G~f~l~~~~~~~~l~liAtGTGiaP~~Sml~~~~~~~~~~~i~L~~g~R~~~dl~y~del~~L~ 159 (248)
T PRK10926 80 AALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQLGKDLERFKNLVLVHAARYAADLSYLPLMQELE 159 (248)
T ss_pred HHCCCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 61678987986379983276667888761799960457899999987278657778789999579878823289999999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCC--CCCCCCCHHHHHCCCHHHHCCCCCCCHHHC
Q ss_conf 753321012468759998105788--776672168785860699678797871212
Q gi|254780364|r 169 SQDEILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMGLSPLNPDTR 222 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~isre~--~~~~GrIt~~i~~g~l~~~~~l~~~~pet~ 222 (224)
++++ ++|+|++++|||+ ..++||||++|++|.|++.+++ +++|+++
T Consensus 160 ~~~~-------~~~~~~~vlSrE~~~~~l~GRI~~~i~~g~le~~~~~-~~~~~~~ 207 (248)
T PRK10926 160 QRYE-------GKLRIQTVVSRETAAGSLTGRVPALIENGELESAVGL-PMDKETS 207 (248)
T ss_pred HHCC-------CCCEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHCCC-CCCCCCC
T ss_conf 7653-------7705888414678864346460134337706886299-9985678
No 2
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=0 Score=318.33 Aligned_cols=194 Identities=41% Similarity=0.669 Sum_probs=177.0
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCC-CCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89899847998699998078999738985788031458-61105564320566777601799961576765310000222
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVN-GRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPG 94 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~-g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~g 94 (224)
||++++++|+|+++|+|+.|++|+|+||||++|+++.. ++.++|+|||||+|.++.++++|+++++|.+|++|+++++|
T Consensus 1 tvv~~~~~t~dv~~l~l~~~~~~~f~pGQyv~l~~~~~~~~~~~R~YSiss~p~~~~l~~~ik~v~~G~~S~~L~~l~~G 80 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPG 80 (241)
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCC
T ss_conf 96889975798799998289998879898189999638992787434455389998299999996399531658747999
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100168875335644676881799965868088999999865308863389999405864543048889988753321
Q gi|254780364|r 95 DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~ 174 (224)
|.+.+..||+|.|.+++..++++++||||||||||++||+++++..+..++++|+||+|+++|++|++||++|+++++
T Consensus 81 d~v~v~~gP~G~f~l~~~~~~~~ivlIAgGtGItP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-- 158 (241)
T cd06195 81 DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEALAKQYN-- 158 (241)
T ss_pred CEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--
T ss_conf 999642699751451556788678999915124559999999997099984799997589788689999999997779--
Q ss_pred CCCCCCCEEEEEEECCCCC--CCCCCCHHHHHCCCHHHHCCCCC
Q ss_conf 0124687599981057887--76672168785860699678797
Q gi|254780364|r 175 KDLIGQKLKFYRTVTQEDY--LYKGRITNHILSGEFYRNMGLSP 216 (224)
Q Consensus 175 ~~~~~~~~~~~~~isre~~--~~~GrIt~~i~~g~l~~~~~l~~ 216 (224)
.||+|++++|||+. .+.|||++++..+.|+++++.++
T Consensus 159 -----~~~~~~~~~s~~~~~~~~~g~v~~~~~~~~l~~~~~~~~ 197 (241)
T cd06195 159 -----GKFRYVPIVSREKENGALTGRIPDLIESGELEEHAGLPL 197 (241)
T ss_pred -----CCEEEEEEECCCCCCCCCCCCCCHHHHHCHHHHHHCCCC
T ss_conf -----976999997578887786140041555046999737888
No 3
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=3.9e-44 Score=289.88 Aligned_cols=196 Identities=18% Similarity=0.263 Sum_probs=164.6
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECC---CCCCCCCCCEEEECCCCCCCCEEEEEEECCCCC-CCCCEEEEEEECCCCC
Q ss_conf 734211789899847998699998078---999738985788031458611055643205667-7760179996157676
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCR-DDKLEFCSIKVDKGFF 84 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p---~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~-~~~~~~~i~~~~~g~~ 84 (224)
+.+.++++|.+++.+|++++.++|+.+ ++++|+||||++|.+|+.+ .+|+|||||+|. ++.++|+|+++++|.+
T Consensus 103 ~~~~~~~~v~~v~~l~~dv~~l~l~~~~~~~~~~f~pGQy~~l~~~g~~--~~R~YSias~P~~~~~le~~Ir~~p~G~~ 180 (340)
T PRK11872 103 DTLKIEGVVTAVELVSETTAILHLDAGAHGEQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVM 180 (340)
T ss_pred CCCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 7645716999998559966899998789887567699980899867988--63000578799999979999997389820
Q ss_pred CCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 531000-0222221001688753356446768817999658680889999998653088633899994058645430488
Q gi|254780364|r 85 TTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGID 163 (224)
Q Consensus 85 s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~e 163 (224)
|+||++ +++||.+.+ .+|.|.|++.+. .++++||||||||||++|||++++..+..++|+|+||+|+++|++|.+|
T Consensus 181 S~~L~~~l~~Gd~l~v-~gP~G~F~l~~~--~~plvlIAgGtGiaPilSmL~~l~~~~~~~~v~L~~G~R~~~dl~~~~e 257 (340)
T PRK11872 181 SNYLRDRCQVGDELLI-EAPLGSFYLRQV--ERPLVFVAGGTGLSAFLGMLDNLVEQGCSPPVHLYYGVRSEADLCELQR 257 (340)
T ss_pred HHHHHHCCCCCCEEEE-ECCCCCEEECCC--CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 4889856899998999-627311796367--8867999448653779999999998189986799996499799777999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHHHHCCCH------HHHCCCCCC
Q ss_conf 89988753321012468759998105788776---6721687858606------996787978
Q gi|254780364|r 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDYLY---KGRITNHILSGEF------YRNMGLSPL 217 (224)
Q Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i~~g~l------~~~~~l~~~ 217 (224)
+.+|+++++ ||+|++++|+++..| .|+|++.+....+ ...||+++|
T Consensus 258 l~~l~~~~~--------~~~~~~vls~~~~~w~g~~G~v~~~~~~~~~~~~~~~vYlCGPp~m 312 (340)
T PRK11872 258 IAAYAERLP--------NFRFHPVVSKATEDWQGKRGYIHEHFDKDQLREQAFDMYLCGPPPM 312 (340)
T ss_pred HHHHHHHCC--------CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 999887679--------9499999877898877763868899885357888999999099999
No 4
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=6.7e-43 Score=282.29 Aligned_cols=183 Identities=22% Similarity=0.382 Sum_probs=161.6
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCCC----CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 21178989984799869999807899----97389857880314586110556432056677760179996157676531
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPKS----FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTY 87 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~~----~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~ 87 (224)
+.+.||++++++|+++++|+|+.|++ ++|+||||++|.++..|+..+|+|||||+|.++.+++.|+++++|.+|++
T Consensus 1 f~p~~V~~i~~et~dv~~~~l~~p~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~i~Vk~~~~G~~S~~ 80 (241)
T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNW 80 (241)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCHH
T ss_conf 92029999999799919999983887666889799968999973299687433340467999979999999879970478
Q ss_pred CCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 000-0222221001688753356446768817999658680889999998653088633899994058645430488899
Q gi|254780364|r 88 LQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH 166 (224)
Q Consensus 88 l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~ 166 (224)
+++ +++||.+.+ .+|.|.|.+......++++|||||||||||+||+++++..+...+++|+||+|+++|++|.+||++
T Consensus 81 l~~~l~~Gd~v~v-~gP~G~f~~~~~~~~~~lvliAgG~GitP~~sml~~~l~~~~~~~v~l~~g~r~~~d~~~~~el~~ 159 (241)
T cd06214 81 ANDELKAGDTLEV-MPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASVIFREELAD 159 (241)
T ss_pred HHHCCCCCCEEEE-ECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 8841899999997-657577240677788619999568751849999999997499983899980799799788999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCC---CCCCCHHH
Q ss_conf 8875332101246875999810578877---66721687
Q gi|254780364|r 167 EISQDEILKDLIGQKLKFYRTVTQEDYL---YKGRITNH 202 (224)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~isre~~~---~~GrIt~~ 202 (224)
|+++++ +||++++++|+++.. +.|||+..
T Consensus 160 l~~~~~-------~~~~~~~~~s~~~~~~~~~~Gri~~~ 191 (241)
T cd06214 160 LKARYP-------DRLTVIHVLSREQGDPDLLRGRLDAA 191 (241)
T ss_pred HHHHCC-------CCEEEEEEECCCCCCCCCCCCCCCHH
T ss_conf 998677-------97899999888998876656753899
No 5
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=4.6e-43 Score=283.29 Aligned_cols=189 Identities=19% Similarity=0.319 Sum_probs=158.6
Q ss_pred CHHCCCCCEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCCC-----------------------------
Q ss_conf 32207342117898998479986999980789--99738985788031458-----------------------------
Q gi|254780364|r 5 SSELAADVYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIVN----------------------------- 53 (224)
Q Consensus 5 ~~~ip~~~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~~----------------------------- 53 (224)
+.-+..+.|++||++++++|+|+++|+|+.|+ .+.|+||||++|.+|+.
T Consensus 2 ~~~~~~~~~~~~v~s~~~lt~di~~~~l~l~~~~~~~f~aGQyv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (283)
T cd06188 2 EEVLGAKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKH 81 (283)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 65567516789999743676872899998799981522588779996078654444455423444456541521100246
Q ss_pred CCCEEEEEEECCCCCCCC-CEEEEE---------EECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 611055643205667776-017999---------6157676531000022222100168875335644676881799965
Q gi|254780364|r 54 GRPIFRAYSIASPCRDDK-LEFCSI---------KVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSM 123 (224)
Q Consensus 54 g~~~~R~ySiaS~p~~~~-~~~~i~---------~~~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAg 123 (224)
++.++|+|||||+|.++. ++|+|+ ++++|.+|++|+++++||.+.+ .+|.|.|++.+ ..++++||||
T Consensus 82 ~~~~~R~ySiAs~P~~~~~le~~Ir~~~~~~~~~~vp~G~~S~~l~~lk~Gd~v~i-~gP~G~f~l~~--~~~~lvlIAg 158 (283)
T cd06188 82 DEPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTA-SGPFGEFFIKD--TDREMVFIGG 158 (283)
T ss_pred CCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEE-ECCCCCCEECC--CCCCEEEEEE
T ss_conf 77641431357899999969999998218855466898513568864999998999-64645617157--8885289983
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC--CCC---CC
Q ss_conf 86808899999986530-8863389999405864543048889988753321012468759998105788--776---67
Q gi|254780364|r 124 GTGIAPFASMIRDPETY-KKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--YLY---KG 197 (224)
Q Consensus 124 GtGiaP~~silr~~~~~-~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~--~~~---~G 197 (224)
||||||++||+++++.. +..++|+|+||+|+++|++|+++|++|+++++ ||+|++++|++. ..| +|
T Consensus 159 GtGIaPl~Sml~~~l~~~~~~r~v~l~ygaR~~~dl~~~~el~~l~~~~~--------n~~~~~vlS~~~~~~~w~g~~G 230 (283)
T cd06188 159 GAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFP--------NFKYHPVLSEPQPEDNWDGYTG 230 (283)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCC--------CEEEEEEECCCCCCCCCCCCCC
T ss_conf 56744699999999982699972899997088899744999999997689--------9799999787786667778617
Q ss_pred CCHHHHH
Q ss_conf 2168785
Q gi|254780364|r 198 RITNHIL 204 (224)
Q Consensus 198 rIt~~i~ 204 (224)
+|++.+.
T Consensus 231 ~V~~~~~ 237 (283)
T cd06188 231 FIHQVLL 237 (283)
T ss_pred CCCHHHH
T ss_conf 6348999
No 6
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=2.4e-42 Score=278.94 Aligned_cols=199 Identities=17% Similarity=0.241 Sum_probs=164.4
Q ss_pred HHCCCCCEEEEEEEEEECCCCEEEEEEEC--CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCC
Q ss_conf 22073421178989984799869999807--899973898578803145861105564320566777-601799961576
Q gi|254780364|r 6 SELAADVYCESVISVKHYTDRLFRFCITR--PKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKG 82 (224)
Q Consensus 6 ~~ip~~~~~~~V~~~~~~T~~~~~l~l~~--p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g 82 (224)
.++|.+.++++|++++++|+++++|+|.. .+.++|+||||++|.+++ + .+|+|||||+|.++ .++|+|+++++|
T Consensus 96 ~~~~~~~~~a~v~~~~~lt~dv~~l~l~l~~~~~~~f~pGQy~~l~~~~-~--~~R~YSiAs~P~~~~~lef~Ir~~p~G 172 (337)
T PRK07609 96 GDIPVKKLPCRVASLERVAGDVMIVKLRLPATERLQYLAGQYIELILKD-G--KRRSYSIANAPHSGGPLELHIRHMPGG 172 (337)
T ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECC-C--CEEEEEECCCCCCCCEEEEEEEECCCC
T ss_conf 5567417878999973288886999998589975666898879999769-9--528775056889999899999833897
Q ss_pred CCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 76531000-02222210016887533564467688179996586808899999986530886338999940586454304
Q gi|254780364|r 83 FFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYG 161 (224)
Q Consensus 83 ~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~ 161 (224)
.+|+||++ +++||.+.+ .+|.|.|++.+. +.++++||||||||||++||+++++..+..++|+|+||+|+++|+++.
T Consensus 173 ~~S~~L~~~l~~Gd~l~v-~gP~G~f~l~~~-~~rplvlIAgGtGiaPi~Sml~~~~~~~~~~~i~L~~G~R~~~dly~~ 250 (337)
T PRK07609 173 VFTDHVFGALKERDILRI-EGPLGTFFLRED-SDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVHLYWGVRRPKDLYLS 250 (337)
T ss_pred CCCHHHHHCCCCCCEEEE-ECCCCCEEECCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf 671889836899999999-768444370677-899789996561567899999999973999818999835987986439
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCC-CCCCC---CCCHHHHHC--CCH----HHHCCCCCC
Q ss_conf 888998875332101246875999810578-87766---721687858--606----996787978
Q gi|254780364|r 162 IDVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLYK---GRITNHILS--GEF----YRNMGLSPL 217 (224)
Q Consensus 162 ~el~~l~~~~~~~~~~~~~~~~~~~~isre-~~~~~---GrIt~~i~~--g~l----~~~~~l~~~ 217 (224)
+++++|+++++ ||+|++++|++ +..|+ |+|++.+.. ..+ ...||.++|
T Consensus 251 e~l~~l~~~~~--------~~~~~~vls~~~~~~w~G~~G~v~~~v~~~~~~~~~~~vYlCGPp~M 308 (337)
T PRK07609 251 ALAEQWAEELP--------NFRYVPVVSDPDAEDWTGRTGFVHQAVLEDFPDLSGHQVYACGSPVM 308 (337)
T ss_pred HHHHHHHHHCC--------CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 99999986489--------84899997778877767760538899996579966889999799999
No 7
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=9.1e-43 Score=281.49 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=160.8
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC
Q ss_conf 21178989984799869999807899973898578803145861105564320566777-60179996157676531000
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN 90 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~ 90 (224)
.++++|++++++|+++++|+|+++++++|+||||++|.++. ...|+|||||+|.++ .++++|++.++|.+++++++
T Consensus 2 t~~a~V~~i~~lt~dv~~l~L~~~~~~~f~pGQy~~l~~~~---~~~R~ySias~P~~~~~lel~I~~~~~g~~~~~l~~ 78 (232)
T PRK08051 2 TISCKVTSVEPITDTVYRVRLVPEQPFSFKAGQYLMVVMGE---KDKRPFSIASTPDEKGFIELHIGASELNSYAMAVVE 78 (232)
T ss_pred CEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECC---CCCEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 27899999870699869999945998888999859999189---886783367789999829999754289842589996
Q ss_pred -CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf -0222221001688753356446768817999658680889999998653088633899994058645430488899887
Q gi|254780364|r 91 -IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 91 -~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
+++||.+.+ .+|.|.|+++.. ..++++||||||||||++||++++++.+..++++|+||+|+++|++|++||++|++
T Consensus 79 ~l~~G~~v~v-~gP~G~f~l~~~-~~~p~vlIAgGtGiaPi~Sml~~~~~~~~~~~i~L~~g~r~~~dl~~~~el~~l~~ 156 (232)
T PRK08051 79 RLLKDGEIEV-DAPHGDAWLRDE-SERPLLLIAGGTGFSYARSILLTALARGPKRPITLYWGGREEDHLYDLDELEALSL 156 (232)
T ss_pred CCCCCCEEEE-ECCCCCEEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCHHHHHHHHH
T ss_conf 0899999999-667205695788-88838999717366578999999998599974899995599899638999999998
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCC---CCCHHHHHC--CCH----HHHCCCCCC
Q ss_conf 533210124687599981057887766---721687858--606----996787978
Q gi|254780364|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYK---GRITNHILS--GEF----YRNMGLSPL 217 (224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~isre~~~~~---GrIt~~i~~--g~l----~~~~~l~~~ 217 (224)
+++ ||+|++++++++..|+ |+|++.+.. ..+ ...||+++|
T Consensus 157 ~~~--------~~~~~~~~~~~~~~w~g~~G~v~~~i~~~~~~~~~~~~ylCGPp~M 205 (232)
T PRK08051 157 KHP--------NLHFVPVVEQPEEGWRGKTGTVLTAVMQDFGSLAEYDIYIAGRFEM 205 (232)
T ss_pred HCC--------CCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 889--------9179999815998868860738999986536865898999799999
No 8
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=5.6e-41 Score=270.51 Aligned_cols=182 Identities=19% Similarity=0.274 Sum_probs=158.0
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCC--CCCEEEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 3421178989984799869999807899---9738985788031458--6110556432056677760179996157676
Q gi|254780364|r 10 ADVYCESVISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVN--GRPIFRAYSIASPCRDDKLEFCSIKVDKGFF 84 (224)
Q Consensus 10 ~~~~~~~V~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~--g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~ 84 (224)
.++.+.+|++++++|+|+++|+|+++++ ++|+||||++|.++.. ++...|+|||+|+|.++.+++.|+++++|.+
T Consensus 4 ~g~~~~~V~~~~~et~dv~~~~l~~~dg~~~~~f~pGQ~v~v~~~~~g~~~~~~R~YSiss~p~~~~~~i~Vkr~~~G~~ 83 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLV 83 (247)
T ss_pred CCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCH
T ss_conf 88797899999994899599999858988288839998189999968987468888898158999989999998999953
Q ss_pred CCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 531000-0222221001688753356446768817999658680889999998653088633899994058645430488
Q gi|254780364|r 85 TTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGID 163 (224)
Q Consensus 85 s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~e 163 (224)
|++|++ +++||.+.+ .+|.|.|.+++. ..++++||||||||||++||+++++..+..++++|+||+|+++|++|.+|
T Consensus 84 S~~l~~~l~~Gd~v~v-~gP~G~f~l~~~-~~~~~vlIAgG~GItP~~sml~~l~~~~~~~~i~l~yg~r~~~d~~~~~e 161 (247)
T cd06184 84 SNYLHDNVKVGDVLEV-SAPAGDFVLDEA-SDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARNSAVHAFRDE 161 (247)
T ss_pred HHHHHHCCCCCCEEEE-EECCCCEEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 2699837899989999-817875673257-89868999668763549999999986499984899995699799378999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCCCC-------CCCCCHH
Q ss_conf 8998875332101246875999810578877-------6672168
Q gi|254780364|r 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDYL-------YKGRITN 201 (224)
Q Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~isre~~~-------~~GrIt~ 201 (224)
|++|+++++ ||+++.++|++... ..|||+.
T Consensus 162 L~~l~~~~~--------~~~~~~~~s~~~~~~~~~~~~~~Gri~~ 198 (247)
T cd06184 162 LEELAARLP--------NLKLHVFYSEPEAGDREEDYDHAGRIDL 198 (247)
T ss_pred HHHHHHHCC--------CEEEEEEECCCCCCCCCCCCCCCCCCCH
T ss_conf 999997689--------9599999887885555677751265289
No 9
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=3.7e-41 Score=271.64 Aligned_cols=193 Identities=24% Similarity=0.336 Sum_probs=163.3
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 2117898998479986999980789--99738985788031458611055643205667776017999615767653100
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQ 89 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~ 89 (224)
.|++||++++++|+++++|+|+.|+ .++|+||||++|.+++. ..+|+|||||+|.++.+++.|+++++|.+|++|+
T Consensus 1 t~~a~V~~v~~~t~di~~~~l~~~~~~~~~f~pGQ~v~l~~~g~--~~~R~ySias~p~~~~l~~~Ik~~~~G~~s~~l~ 78 (228)
T cd06209 1 TFEATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGT--DETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCC--CCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
T ss_conf 98999999899589949999982999988748997599998992--8468998700899798999999907995678998
Q ss_pred CC-CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 00-22222100168875335644676881799965868088999999865308863389999405864543048889988
Q gi|254780364|r 90 NI-QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 90 ~~-~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~ 168 (224)
+. ++||.+.+ .+|.|.|.+.+ ..++++|||||||||||+||++++...+...+++|+||+|+.+|++|.++|++|+
T Consensus 79 ~~~~~Gd~v~i-~gP~G~f~l~~--~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~v~l~yg~r~~~d~~~~~~l~~l~ 155 (228)
T cd06209 79 DRAQPGDRLTL-TGPLGSFYLRE--VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELDRLEALA 155 (228)
T ss_pred HCCCCCCEEEE-ECCCCCCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 55899999999-70354742357--8887899966877342999999999759998389998249789987899999999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCC--CCCCCCHHHHHCCCH------HHHCCCCCC
Q ss_conf 7533210124687599981057887--766721687858606------996787978
Q gi|254780364|r 169 SQDEILKDLIGQKLKFYRTVTQEDY--LYKGRITNHILSGEF------YRNMGLSPL 217 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~isre~~--~~~GrIt~~i~~g~l------~~~~~l~~~ 217 (224)
++++ +|++++++|+++. ...|+|++++....+ ...||+++|
T Consensus 156 ~~~~--------~~~~~~~~s~~~~~~~~~g~v~~~l~~~~~~~~~~~~yiCGP~~m 204 (228)
T cd06209 156 ERLP--------GFSFRTVVADPDSWHPRKGYVTDHLEAEDLNDGDVDVYLCGPPPM 204 (228)
T ss_pred HHCC--------CCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 8789--------939999981687444534828788875247889979999599999
No 10
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.4e-41 Score=272.82 Aligned_cols=194 Identities=18% Similarity=0.313 Sum_probs=161.6
Q ss_pred EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC-
Q ss_conf 1178989984799869999807899973898578803145861105564320566777-60179996157676531000-
Q gi|254780364|r 13 YCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN- 90 (224)
Q Consensus 13 ~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~- 90 (224)
..+||++++++|+|+++|+|+.+++++|+||||++|.+++. ...|+|||||+|.++ .+++.|+++++|.+|++|++
T Consensus 1 ~~a~v~~~~~~t~dv~~~~l~~~~~~~f~pGQ~v~l~~~g~--~~~R~ySias~p~~~~~i~~~Vk~~~~G~~s~~l~~~ 78 (227)
T cd06213 1 IRGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGL--PAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGA 78 (227)
T ss_pred CEEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEECCC--CCCCEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHC
T ss_conf 98999999993799499999829988819985899998990--7520345536899888899999986799427899843
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 02222210016887533564467688179996586808899999986530886338999940586454304888998875
Q gi|254780364|r 91 IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQ 170 (224)
Q Consensus 91 ~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~ 170 (224)
+++||.+.+ .+|.|.|.+.+ ..++++|||||||||||+||+++++..+..++++|+||+|+.+|++|.+||++|+++
T Consensus 79 l~~Gd~v~v-~gP~G~f~l~~--~~~~ivliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~~el~~l~~~ 155 (227)
T cd06213 79 DRTGERLTV-RGPFGDFWLRP--GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALDEIAAIAAR 155 (227)
T ss_pred CCCCCEEEE-ECCCCCEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 899989999-74733648327--998589997684644099999999973998774787515998997529999999874
Q ss_pred HHHHCCCCCCCEEEEEEECCCCC--CC---CCCCHHHHHC----CCHHHHCCCCCCC
Q ss_conf 33210124687599981057887--76---6721687858----6069967879787
Q gi|254780364|r 171 DEILKDLIGQKLKFYRTVTQEDY--LY---KGRITNHILS----GEFYRNMGLSPLN 218 (224)
Q Consensus 171 ~~~~~~~~~~~~~~~~~isre~~--~~---~GrIt~~i~~----g~l~~~~~l~~~~ 218 (224)
+. +||++++++|+++. .| .|+|++.+.+ +.-...||+++|-
T Consensus 156 ~~-------~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~~~~~~~y~CGp~~m~ 205 (227)
T cd06213 156 WR-------GRFRFIPVLSEEPADSSWKGARGLVTEHIAEVLLAATEAYLCGPPAMI 205 (227)
T ss_pred CC-------CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 67-------966999996468888885575574889886146799999993999999
No 11
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=4.2e-40 Score=265.17 Aligned_cols=180 Identities=21% Similarity=0.341 Sum_probs=154.6
Q ss_pred EEEEEEEEEECCCCEEEEEEEC--CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCC
Q ss_conf 1178989984799869999807--899973898578803145861105564320566777-6017999615767653100
Q gi|254780364|r 13 YCESVISVKHYTDRLFRFCITR--PKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQ 89 (224)
Q Consensus 13 ~~~~V~~~~~~T~~~~~l~l~~--p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~ 89 (224)
|.+||++++++|+|+++|+|+. ++.++|+||||++|.+++. ..+|+|||+|+|.++ .+++.|+++++|.+|++|+
T Consensus 1 ~~a~V~~i~~~t~di~~~~l~~~~~~~~~f~~GQ~v~~~~~g~--~~~R~ySi~s~p~~~~~~~l~Vk~~~~G~~s~~l~ 78 (232)
T cd06212 1 FVGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGT--EETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred CEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCC--CCEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 9199999997589939999993999968718985599998998--81789974627999988999999977995588998
Q ss_pred C-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 0-022222100168875335644676881799965868088999999865308863389999405864543048889988
Q gi|254780364|r 90 N-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 90 ~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~ 168 (224)
+ +++||.+.+ .+|.|.|.+.+. +.++++|||||||||||+||+++++..+..++++|+||+|+++|++|.+||++|+
T Consensus 79 ~~l~~Gd~v~v-~gP~G~f~l~~~-~~~~~vliAgG~GitP~~sml~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~ 156 (232)
T cd06212 79 DGLAVGDPVTV-TGPYGTCTLRES-RDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALG 156 (232)
T ss_pred HCCCCCCEEEE-ECCCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 55899989999-737567510678-8987899956877025999999999749997489998448878878899999999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCC--CCC---CCCCHHHHH
Q ss_conf 753321012468759998105788--776---672168785
Q gi|254780364|r 169 SQDEILKDLIGQKLKFYRTVTQED--YLY---KGRITNHIL 204 (224)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~isre~--~~~---~GrIt~~i~ 204 (224)
++++ ||+|++++|++. ..| .|+|++.+.
T Consensus 157 ~~~~--------~~~~~~~~s~~~~~~~~~g~~g~i~~~l~ 189 (232)
T cd06212 157 EKIP--------DFTFIPALSESPDDEGWSGETGLVTEVVQ 189 (232)
T ss_pred HHCC--------CCEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 8789--------92999998337866676664560889998
No 12
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=3.5e-40 Score=265.63 Aligned_cols=177 Identities=19% Similarity=0.289 Sum_probs=154.5
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC-CCCEEEEEEECCCCCCCCCCC-CC
Q ss_conf 7898998479986999980789997389857880314586110556432056677-760179996157676531000-02
Q gi|254780364|r 15 ESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD-DKLEFCSIKVDKGFFTTYLQN-IQ 92 (224)
Q Consensus 15 ~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~-~~~~~~i~~~~~g~~s~~l~~-~~ 92 (224)
.||++++++|+|+++|+|+.|+.++|+||||+.|.+++.+ +|+|||+|+|.+ +.+.+.|+++++|.+|++|++ ++
T Consensus 1 ckV~~i~~~t~dv~~l~l~~~~~~~f~pGQ~v~v~~~~~~---~R~ySi~s~p~~~~~l~l~ik~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGD---KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCCC
T ss_conf 9888989848996999996699888789974899959987---8998616589999839999999679815889985499
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22221001688753356446768817999658680889999998653088633899994058645430488899887533
Q gi|254780364|r 93 PGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 93 ~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
+||.+.+ .+|+|.|.++.. +.++++||||||||||++||++++...+..++++|+||+|+++|++|.+|+++|+++++
T Consensus 78 ~Gd~v~v-~gP~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~~ 155 (224)
T cd06189 78 ENGLVRI-EGPLGDFFLRED-SDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHP 155 (224)
T ss_pred CCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9998999-706757411567-89858999368775539999999997599998167742699799868999999997689
Q ss_pred HHCCCCCCCEEEEEEECCCCCCC---CCCCHHHHH
Q ss_conf 21012468759998105788776---672168785
Q gi|254780364|r 173 ILKDLIGQKLKFYRTVTQEDYLY---KGRITNHIL 204 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i~ 204 (224)
||+|++++|+++..| .|+|++.+.
T Consensus 156 --------~~~~~~~~s~~~~~~~~~~G~v~~~~~ 182 (224)
T cd06189 156 --------NFTYVPVLSEPEEGWQGRTGLVHEAVL 182 (224)
T ss_pred --------CEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf --------959999975688775665580899999
No 13
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.8e-40 Score=266.27 Aligned_cols=179 Identities=21% Similarity=0.438 Sum_probs=156.3
Q ss_pred EEEEEEEECCCCEEEEEEECCCC--CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC-
Q ss_conf 78989984799869999807899--973898578803145861105564320566777-60179996157676531000-
Q gi|254780364|r 15 ESVISVKHYTDRLFRFCITRPKS--FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN- 90 (224)
Q Consensus 15 ~~V~~~~~~T~~~~~l~l~~p~~--~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~- 90 (224)
.+|++++++|+|+++|+|+.+++ +.|+||||++|+++..|+.++|+|||||+|.++ .+++.|+++++|.+|++|++
T Consensus 1 lrV~~~~~~t~dv~~~~l~~~~~~~~~f~aGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~~~~Vk~~~~G~~S~~l~~~ 80 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHC
T ss_conf 99999999699949999985998989858987799997669937876663355799999899999995598067899961
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 02222210016887533564467688179996586808899999986530886338999940586454304888998875
Q gi|254780364|r 91 IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQ 170 (224)
Q Consensus 91 ~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~ 170 (224)
+++||.+.+ .+|.|.|.+.+. +.++++||||||||||++||++++...+...+++|+||+|+.+|++|++||++|+++
T Consensus 81 l~~G~~v~v-~gP~G~f~l~~~-~~~~ivlIAgG~GitP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~~el~~l~~~ 158 (231)
T cd06215 81 LKVGDELWA-SGPAGEFTLIDH-PADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEELARR 158 (231)
T ss_pred CCCCCEEEE-EECCCCCCCCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 889999999-703448745788-878789998167778479999999970999971899706997993579999999976
Q ss_pred HHHHCCCCCCCEEEEEEECCCC-C---CCCCCCHH-HH
Q ss_conf 3321012468759998105788-7---76672168-78
Q gi|254780364|r 171 DEILKDLIGQKLKFYRTVTQED-Y---LYKGRITN-HI 203 (224)
Q Consensus 171 ~~~~~~~~~~~~~~~~~isre~-~---~~~GrIt~-~i 203 (224)
++ +|++++++|++. . ..+|||++ ++
T Consensus 159 ~~--------~~~~~~~~s~~~~~~~~~~~Gri~~~~l 188 (231)
T cd06215 159 HP--------NFRLHLILEQPAPGAWGGYRGRLNAELL 188 (231)
T ss_pred CC--------CCEEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 89--------9199999888898766584265299999
No 14
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=1.1e-40 Score=268.68 Aligned_cols=204 Identities=18% Similarity=0.326 Sum_probs=165.5
Q ss_pred CCCHHCCC-----CCEEEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECCCCCC---------------------
Q ss_conf 44322073-----4211789899847998699998078--9997389857880314586---------------------
Q gi|254780364|r 3 DVSSELAA-----DVYCESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLIVNG--------------------- 54 (224)
Q Consensus 3 ~~~~~ip~-----~~~~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g--------------------- 54 (224)
|++.++|. +.|.++|++.+.++..|+.|+|+.| +.++|+||||+++.+|...
T Consensus 118 dm~i~vp~e~~~vk~we~~Vvsn~nvatfIKEl~l~lp~ge~~~fkaG~yiQi~iP~~~~~~~~~di~~~y~~dW~~~~~ 197 (408)
T PRK05464 118 DMKIELPEEIFGVKKWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWEKFGL 197 (408)
T ss_pred CCEEECCHHHHCCCCEEEEEEECCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 86687477980666358999975652222433689678997452025877999637631464513553777888875482
Q ss_pred --------CCEEEEEEECCCCCCCCCEEEEEEE----------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf --------1105564320566777601799961----------5767653100002222210016887533564467688
Q gi|254780364|r 55 --------RPIFRAYSIASPCRDDKLEFCSIKV----------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGN 116 (224)
Q Consensus 55 --------~~~~R~ySiaS~p~~~~~~~~i~~~----------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~ 116 (224)
+...|+||+||.|.+..+..+.+|+ ++|.+|+|++++++||.+.+. ||+|.|++.+ ..+
T Consensus 198 ~~~~~~~~e~~~RaYSmAn~p~e~~~i~~niRiatpPp~~~~vppG~~Ssyl~~LK~GD~V~is-GP~G~Ffl~d--s~~ 274 (408)
T PRK05464 198 FRLVSKVDEPTIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTIS-GPFGEFFAKD--TDA 274 (408)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEE-CCCCCEEECC--CCC
T ss_conf 1110358746553121357867688489999961699887889972211445238999889997-7864427558--998
Q ss_pred CEEEEECCCCHHHHHHHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CC
Q ss_conf 1799965868088999999865-30886338999940586454304888998875332101246875999810578--87
Q gi|254780364|r 117 RLYLFSMGTGIAPFASMIRDPE-TYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DY 193 (224)
Q Consensus 117 ~lvlIAgGtGiaP~~silr~~~-~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~~ 193 (224)
++||||||||+||++||+.+++ ..+..++++|+||+|+.+|++|.+|+++|+++++ ||+|++++|++ +.
T Consensus 275 ~mVfIaGGtGmAPlrS~I~~~l~~~~~~R~I~l~yGARs~~DL~y~de~~~La~e~p--------NF~y~~aLS~p~~ed 346 (408)
T PRK05464 275 EMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSLREMFYQEDFDQLAAENP--------NFVWHVALSDPLPED 346 (408)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCCC
T ss_conf 779993586667489999999986088875699996476576233799999998789--------957999978889666
Q ss_pred CC---CCCCHHHHHCCCHH----------HHCCCCCC
Q ss_conf 76---67216878586069----------96787978
Q gi|254780364|r 194 LY---KGRITNHILSGEFY----------RNMGLSPL 217 (224)
Q Consensus 194 ~~---~GrIt~~i~~g~l~----------~~~~l~~~ 217 (224)
.| +|+|++.+.+..|. +.||+|+|
T Consensus 347 ~W~G~tGfIh~vl~~~yL~dh~~ped~e~YlCGPP~M 383 (408)
T PRK05464 347 NWTGYTGFIHNVLYENYLKDHPAPEDCEYYMCGPPMM 383 (408)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 8888737644699998986378855868999899899
No 15
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=5.2e-40 Score=264.62 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=160.3
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC-CCCC
Q ss_conf 989984799869999807899973898578803145861105564320566777-60179996157676531000-0222
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN-IQPG 94 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~-~~~g 94 (224)
|++++++|+|+++|+|+.+++++|+||||++|.+++.+ ..+|+|||+|+|.++ .+++.|+++++|.+|++|++ +++|
T Consensus 1 vv~i~~~t~d~~~~~l~~~~~~~~~~GQ~v~l~~~~~~-~~~R~ySias~p~~~~~l~l~Vk~~~~G~~S~~L~~~l~~G 79 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRP-RTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVG 79 (224)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCC
T ss_conf 95589827985999998599887289987999988988-05897053688999988999999968984888998539999
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100168875335644676881799965868088999999865308863389999405864543048889988753321
Q gi|254780364|r 95 DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~ 174 (224)
|.+.+ .+|.|.|.++.. ..++++||||||||||++||++++...+..++++|+||+|+++|++|.+|+++|+++++
T Consensus 80 d~v~v-~~P~G~f~~~~~-~~~~~vliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-- 155 (224)
T cd06187 80 DRVRL-SGPYGTFYLRRD-HDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARHP-- 155 (224)
T ss_pred CEEEE-ECCEECCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC--
T ss_conf 98999-717755251677-89868999657562359999999997599982899971588799888999999998789--
Q ss_pred CCCCCCCEEEEEEECCCCCCC---CCCCHHHHHC------CCHHHHCCCCCC
Q ss_conf 012468759998105788776---6721687858------606996787978
Q gi|254780364|r 175 KDLIGQKLKFYRTVTQEDYLY---KGRITNHILS------GEFYRNMGLSPL 217 (224)
Q Consensus 175 ~~~~~~~~~~~~~isre~~~~---~GrIt~~i~~------g~l~~~~~l~~~ 217 (224)
||++++++|+++..| .|+|++.+.. +.....||+++|
T Consensus 156 ------~~~~~~~~s~~~~~~~~~~G~v~~~~~~~~~~~~~~~~yiCGP~~m 201 (224)
T cd06187 156 ------WLRVVPVVSHEEGAWTGRRGLVTDVVGRDGPDWADHDIYICGPPAM 201 (224)
T ss_pred ------CEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf ------9299999825898876664728999986478867989999299999
No 16
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=1e-39 Score=262.82 Aligned_cols=185 Identities=20% Similarity=0.272 Sum_probs=158.6
Q ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCC
Q ss_conf 07342117898998479986999980789--9973898578803145861105564320566777-60179996157676
Q gi|254780364|r 8 LAADVYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFF 84 (224)
Q Consensus 8 ip~~~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~ 84 (224)
+|.+-|+++|++++++|+|+++|+|+.|+ .++|+||||++|.+++ ....|+|||+|+|.++ .+++.|++.++|.+
T Consensus 2 ~~~~~~~a~v~~i~~~t~dv~~~~l~~~~~~~~~f~pGQ~i~l~~~~--~~~~R~ySi~s~p~~~~~~~l~vk~~~~G~~ 79 (238)
T cd06211 2 LNVKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPG--YEGTRAFSIASSPSDAGEIELHIRLVPGGIA 79 (238)
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECC--EECCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 77427899999999858982999999289982774998489999899--8046721256789999879999999679985
Q ss_pred CCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 531000-0222221001688753356446768817999658680889999998653088633899994058645430488
Q gi|254780364|r 85 TTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGID 163 (224)
Q Consensus 85 s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~e 163 (224)
|+++++ +++||.+.+ .+|.|.|.+.+. ..++++|||||||||||+||+++++..+..++++|+||+|+++|++|.++
T Consensus 80 s~~l~~~l~~Gd~v~v-~gP~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~~~~~e 157 (238)
T cd06211 80 TTYVHKQLKEGDELEI-SGPYGDFFVRDS-DQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLDE 157 (238)
T ss_pred CHHHHHCCCCCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 3667744899999999-705557643557-88878999748772459999999997599964999942688799899999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCC--CCC---CCCCHHHHH
Q ss_conf 89988753321012468759998105788--776---672168785
Q gi|254780364|r 164 VMHEISQDEILKDLIGQKLKFYRTVTQED--YLY---KGRITNHIL 204 (224)
Q Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~isre~--~~~---~GrIt~~i~ 204 (224)
|.+++++++ ||++++++|++. ..| .|++++.+.
T Consensus 158 l~~l~~~~~--------~~~~~~~ls~~~~~~~~~~~~g~v~~~~~ 195 (238)
T cd06211 158 FEALEKDHP--------NFKYVPALSREPPESNWKGFTGFVHDAAK 195 (238)
T ss_pred HHHHHHHCC--------CEEEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 999998789--------84999998757866554675252879998
No 17
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=3.4e-40 Score=265.71 Aligned_cols=181 Identities=23% Similarity=0.315 Sum_probs=155.7
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCC-CCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCC
Q ss_conf 2117898998479986999980789--9973898578803145-861105564320566777-60179996157676531
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIV-NGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTY 87 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~-~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~ 87 (224)
+-+.||++++++|+++++|+|+.++ .++|+||||++|+++. +|...+|+|||+|+|.++ .+++.|+++++|.+|++
T Consensus 1 wr~~~V~~v~~~t~~i~~~~l~~~~~~~~~f~pGQ~v~l~~~~~~g~~~~R~ySi~s~p~~~~~~~~~vk~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHH
T ss_conf 91379999999389959999986899989808980199999757991867777306689999889999998999927889
Q ss_pred CCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 000-0222221001688753356446768817999658680889999998653088633899994058645430488899
Q gi|254780364|r 88 LQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH 166 (224)
Q Consensus 88 l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~ 166 (224)
|++ +++||.+.+ .+|.|.|.++.. ..++++||||||||||++||+++++..+..++++|+||+|+.+|++|++||++
T Consensus 81 l~~~l~~Gd~v~v-~gP~G~f~~~~~-~~~~~llIAgG~GItP~~s~l~~~~~~~~~~~i~l~~g~r~~~d~~~~~el~~ 158 (235)
T cd06217 81 LHDEVKVGDLLEV-RGPIGTFTWNPL-HGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAEDVIFRDELEQ 158 (235)
T ss_pred HHHHCCCCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9862659974999-725116422777-89858999458775769999999997099973899972599799666999999
Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCC-C---CCCCCHHH
Q ss_conf 887533210124687599981057887-7---66721687
Q gi|254780364|r 167 EISQDEILKDLIGQKLKFYRTVTQEDY-L---YKGRITNH 202 (224)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~isre~~-~---~~GrIt~~ 202 (224)
|+++++ ||++++++|++.. . ..|||+..
T Consensus 159 l~~~~~--------~~~~~~~~s~~~~~~~~g~~g~i~~~ 190 (235)
T cd06217 159 LARRHP--------NLHVTEALTRAAPADWLGPAGRITAD 190 (235)
T ss_pred HHHHCC--------CEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 997689--------97999997567756656876762899
No 18
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=1.2e-39 Score=262.38 Aligned_cols=200 Identities=22% Similarity=0.365 Sum_probs=165.6
Q ss_pred HHCCCCCEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC--CCEEEEEEECCC
Q ss_conf 22073421178989984799869999807899-973898578803145861105564320566777--601799961576
Q gi|254780364|r 6 SELAADVYCESVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD--KLEFCSIKVDKG 82 (224)
Q Consensus 6 ~~ip~~~~~~~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~--~~~~~i~~~~~g 82 (224)
+-.-++.++++|++++++|+++++|+|+++++ ++|+||||++|.++.+|+..+|+|||+|+|..+ .+++.|+++++|
T Consensus 11 p~~~~r~~~a~V~~i~~~t~dv~~l~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~l~l~Vk~~~~G 90 (243)
T cd06216 11 PLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDG 90 (243)
T ss_pred CCCCCCEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEEECCC
T ss_conf 24107875899999999089919999998997887289987999971499077777655569999998999999993899
Q ss_pred CCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 76531000-02222210016887533564467688179996586808899999986530886338999940586454304
Q gi|254780364|r 83 FFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYG 161 (224)
Q Consensus 83 ~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~ 161 (224)
.+|++|++ +++||.+.+ .+|.|.|.+... ..++++||||||||||++||+++++..+..++++|+||+|+.+|++|.
T Consensus 91 ~~S~~L~~~l~~Gd~v~v-~gP~G~F~l~~~-~~~~~vliAgG~GitP~~sml~~l~~~~~~~~v~l~yg~r~~~d~~~~ 168 (243)
T cd06216 91 LVSNWLVNHLAPGDVVEL-SQPQGDFVLPDP-LPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTREDVIFA 168 (243)
T ss_pred CHHHHHHHCCCCCCEEEE-ECCCCCCCCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHH
T ss_conf 168899854899999999-566047424887-888789999078778289999999973999999999712888998889
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHH-HHHC------CCHHHHCCCCCC
Q ss_conf 8889988753321012468759998105788776672168-7858------606996787978
Q gi|254780364|r 162 IDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITN-HILS------GEFYRNMGLSPL 217 (224)
Q Consensus 162 ~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~-~i~~------g~l~~~~~l~~~ 217 (224)
+||++|+++++ +|+++.++|++. +.||++. .|+. +.-...||+++|
T Consensus 169 ~eL~~l~~~~~--------~~~~~~~~s~~~--~~g~~~~~~l~~~~~d~~~~~vyiCGPp~M 221 (243)
T cd06216 169 DELRALAAQHP--------NLRLHLLYTREE--LDGRLSAAHLDAVVPDLADRQVYACGPPGF 221 (243)
T ss_pred HHHHHHHHHCC--------CEEEEEEECCCC--CCCCCCHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 99999997789--------929999988876--578859999985478878978999398999
No 19
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=2.4e-39 Score=260.57 Aligned_cols=179 Identities=22% Similarity=0.296 Sum_probs=153.2
Q ss_pred EEEEEEEEEECCCCEEEEEEECCC------CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCC
Q ss_conf 117898998479986999980789------9973898578803145861105564320566777-601799961576765
Q gi|254780364|r 13 YCESVISVKHYTDRLFRFCITRPK------SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFT 85 (224)
Q Consensus 13 ~~~~V~~~~~~T~~~~~l~l~~p~------~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s 85 (224)
-+++|++++++|+|+++|+|++++ .++|+||||++|.+++. ..+|+|||+|+|.++ .+++.|+++++|.+|
T Consensus 2 rea~V~~~~~~t~di~~~~l~~~~~~~~~~~~~f~pGQ~v~l~~~g~--~~~R~ySi~s~p~~~~~l~~~vk~~~~G~~S 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC--CEEEEEEEEECCCCCCEEEEEEEEECCCCHH
T ss_conf 27999998972898699999968977767868898996089998998--8089887602799999899999998499467
Q ss_pred CCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 31000-02222210016887533564467688179996586808899999986530886338999940586454304888
Q gi|254780364|r 86 TYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDV 164 (224)
Q Consensus 86 ~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el 164 (224)
++|++ +++||.+.+ .+|.|.|.+++. ..++++||||||||||++||++++...+...+++|+||+|+.+|++|.+||
T Consensus 80 ~~l~~~l~~Gd~v~v-~gP~G~f~l~~~-~~~~~~liAgG~GItP~~s~l~~l~~~~~~~~~~l~~g~r~~~d~~~~~el 157 (236)
T cd06210 80 TYLETRAKVGQRLNL-RGPLGAFGLREN-GLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYLDEL 157 (236)
T ss_pred HHHHHCCCCCCEEEE-EECCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 799855999999999-706457501656-888689994686520799999999972999728999742877778999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC---CCCHHHH
Q ss_conf 99887533210124687599981057887766---7216878
Q gi|254780364|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYK---GRITNHI 203 (224)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~---GrIt~~i 203 (224)
++|+++++ ||++++++++++..|. |++++.+
T Consensus 158 ~~l~~~~~--------~~~~~~~~~~~~~~~~g~~g~~~~~l 191 (236)
T cd06210 158 KRLADSLP--------NLTVRICVWRPGGEWEGYRGTVVDAL 191 (236)
T ss_pred HHHHHHCC--------CCEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 99998789--------93999999547997576647589999
No 20
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=4e-39 Score=259.16 Aligned_cols=184 Identities=16% Similarity=0.281 Sum_probs=152.4
Q ss_pred HCCCCCE--EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCC
Q ss_conf 2073421--178989984799869999807899973898578803145861105564320566777-6017999615767
Q gi|254780364|r 7 ELAADVY--CESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGF 83 (224)
Q Consensus 7 ~ip~~~~--~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~ 83 (224)
.+|.... +.+|.+++++|+|+++|+|..++.++|+||||+.|.++. +...+|+|||+|+|.+. .+.+.|+++++|.
T Consensus 3 ~~~~~~~~~~l~V~~i~~eT~dv~s~~l~~~d~~~f~pGQ~i~v~i~~-~~~~~R~YSlss~P~~~~~~~itVkr~~~G~ 81 (335)
T PRK10684 3 TMPTPQCPNRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRN-SAETLRAYTLSSTPGVSEFITLTVRRIDDGV 81 (335)
T ss_pred CCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECC-CCCCEEEEECCCCCCCCCEEEEEEEEECCCC
T ss_conf 888999970479999998799938999975998984999868999779-9951787677889999987999999818998
Q ss_pred CCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHH
Q ss_conf 65310000-22222100168875335644676881799965868088999999865308863389999405864543048
Q gi|254780364|r 84 FTTYLQNI-QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGI 162 (224)
Q Consensus 84 ~s~~l~~~-~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~ 162 (224)
+|+||++. ++||.+.+ .+|.|.|.+.+. ..++++|||||+||||++||+++++..+...+++|+|++|+++|++|.+
T Consensus 82 ~S~~l~~~l~~Gd~l~v-~~P~G~F~l~~~-~~~~~vliAgGiGITPilSMl~~l~~~~~~~~v~l~y~~r~~~d~~f~~ 159 (335)
T PRK10684 82 GSQWLTRDVKRGDYLWL-SDAMGEFTCDDK-AEDKYLLLAAGCGVTPIMSMRRWLAKNRPQADVQVIFNVRTPQDVIFAD 159 (335)
T ss_pred CCHHHHHCCCCCCEEEE-CCCCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
T ss_conf 62788616789989997-577455252567-8986899965412156999999999619999789999717710078899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCC--CCCCCCCCHH
Q ss_conf 88998875332101246875999810578--8776672168
Q gi|254780364|r 163 DVMHEISQDEILKDLIGQKLKFYRTVTQE--DYLYKGRITN 201 (224)
Q Consensus 163 el~~l~~~~~~~~~~~~~~~~~~~~isre--~~~~~GrIt~ 201 (224)
||++|+++++ +++++...++. +...+|||+.
T Consensus 160 el~~L~~~~~--------~~~~~~~~~~~~~~~~~~Grl~~ 192 (335)
T PRK10684 160 EWQELKRNYP--------QLNVTLVAENNATEGFIAGRITA 192 (335)
T ss_pred HHHHHHHHCC--------CCEEEEEECCCCCCCCCCCCCCH
T ss_conf 9999997589--------83899995478876521377499
No 21
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=1e-39 Score=262.82 Aligned_cols=189 Identities=20% Similarity=0.314 Sum_probs=153.2
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC-CCCC
Q ss_conf 989984799869999807899973898578803145861105564320566777-60179996157676531000-0222
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN-IQPG 94 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~-~~~g 94 (224)
|++++++|+|+++|+|+.+++++|+||||++|.+++. ..|+|||+|+|.++ .+++.|+++++|.+|++|++ +++|
T Consensus 1 V~~v~~~t~dv~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~R~ySias~p~~~~~l~~~Vk~~~~G~~S~~l~~~l~~G 77 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPG 77 (222)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCC---CCEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCCC
T ss_conf 9778875899799999769988838995599998897---5075242779899987999999975995378998608899
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100168875335644676881799965868088999999865308863389999405864543048889988753321
Q gi|254780364|r 95 DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~ 174 (224)
|.+.+ .+|.|.|++......++++||||||||||++||+++++..+..++++|+||+|+++|++|.+||++|+++++
T Consensus 78 d~v~v-~gP~G~~f~~~~~~~~~ivlIAgG~GitP~~s~l~~~~~~~~~~~i~l~~g~r~~~~l~~~~el~~l~~~~~-- 154 (222)
T cd06194 78 HALRL-QGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLAREHP-- 154 (222)
T ss_pred CEEEE-ECCCCCCEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC--
T ss_conf 99999-817898314577788738999747675509999999998399975999998399899430999999998789--
Q ss_pred CCCCCCCEEEEEEECCCCCC-CCC---CCHHHHH---CCCHHHHCCCCCC
Q ss_conf 01246875999810578877-667---2168785---8606996787978
Q gi|254780364|r 175 KDLIGQKLKFYRTVTQEDYL-YKG---RITNHIL---SGEFYRNMGLSPL 217 (224)
Q Consensus 175 ~~~~~~~~~~~~~isre~~~-~~G---rIt~~i~---~g~l~~~~~l~~~ 217 (224)
||++++++++++.. +.+ ++.+.+. +......||+++|
T Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGP~~m 198 (222)
T cd06194 155 ------NFRYIPCVSEGSQGDPRVRAGRIAAHLPPLTRDDVVYLCGAPSM 198 (222)
T ss_pred ------CEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf ------94999998878777776525558765668889989999199999
No 22
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=2e-39 Score=260.98 Aligned_cols=169 Identities=24% Similarity=0.425 Sum_probs=151.8
Q ss_pred EEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC-C
Q ss_conf 7898998479986999980789--997389857880314586110556432056677760179996157676531000-0
Q gi|254780364|r 15 ESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQN-I 91 (224)
Q Consensus 15 ~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~-~ 91 (224)
.+|++++++|+|+++|+|..|+ .+.|+||||++|+++..|+..+|+|||+|+|.++.++++|+++++|.+|++|++ +
T Consensus 1 lrV~~v~~~t~d~~~~~l~~~~~~~~~f~pGQ~v~~~~~~~g~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S~~l~~~l 80 (231)
T cd06191 1 LRVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI 80 (231)
T ss_pred CEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHCC
T ss_conf 98999999489909999983898888859986799997168968771346678999998999999965996788997468
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 22222100168875335644676881799965868088999999865308863389999405864543048889988753
Q gi|254780364|r 92 QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
++||.+.+ .+|+|.|.++.. +.++++|||||||||||+|||++++..+..++++|+||+|+++|++|.+||+++++++
T Consensus 81 ~~Gd~v~i-~gP~G~f~l~~~-~~~~~lliAgG~GItP~~s~l~~~~~~~~~~~v~l~yg~r~~~d~~~~~eL~~l~~~~ 158 (231)
T cd06191 81 QPGMTVEV-MGPQGHFVYQPQ-PPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQELRELADKP 158 (231)
T ss_pred CCCCEEEE-EECCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 99999999-705346500678-8887999952753273899999999857898589998269979946699999998648
Q ss_pred HHHCCCCCCCEEEEEEECCCCC
Q ss_conf 3210124687599981057887
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDY 193 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~ 193 (224)
+ ||++++++|+++.
T Consensus 159 ~--------~~~~~~~~s~~~~ 172 (231)
T cd06191 159 Q--------RLRLLCIFTRETL 172 (231)
T ss_pred C--------CCEEEEEEECCCC
T ss_conf 9--------9299999916787
No 23
>PRK13289 nitric oxide dioxygenase; Provisional
Probab=100.00 E-value=8.3e-39 Score=257.23 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=154.3
Q ss_pred CCEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCCCC--CEEEEEEECCCCCCCCCEEEEEEECCCCCC
Q ss_conf 421178989984799869999807899---973898578803145861--105564320566777601799961576765
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVNGR--PIFRAYSIASPCRDDKLEFCSIKVDKGFFT 85 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~g~--~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s 85 (224)
++-+.+|++++.+|+++.+|.|++.++ .+|+||||+.|++...|+ ..+|+|||||+|.++.+.+.|+++++|.+|
T Consensus 153 g~r~f~V~~~~~es~~i~sf~l~P~Dg~~l~~f~pGQYisv~~~~p~~~~~~~R~YSLS~aP~~~~~rIsVKr~~gG~vS 232 (399)
T PRK13289 153 GWRDFRVVKKVPESAEITSFYLEPVDGGPVAEFKPGQYLGVRLDIEGFEYQEIRQYSLSDAPNGKYYRISVKREAGGKVS 232 (399)
T ss_pred CCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHH
T ss_conf 54578999899748976999998189996899899997899996799975540541137899999579999977998113
Q ss_pred CCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 310000-2222210016887533564467688179996586808899999986530886338999940586454304888
Q gi|254780364|r 86 TYLQNI-QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDV 164 (224)
Q Consensus 86 ~~l~~~-~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el 164 (224)
++|++. ++||.+.+ .+|.|.|.++.. ..++++|||||+||||++||+++++..+..++|+|+||+|+.++++|++||
T Consensus 233 ~~Lhd~l~vGD~l~v-s~P~G~F~L~~~-~~~plVLIAgGiGITPmlSML~~l~~~~~~r~V~liygaR~~~~~~F~~eL 310 (399)
T PRK13289 233 NYLHDHVNVGDVLEL-AAPAGDFFLDVA-SDTPVVLISGGVGITPMLSMLETLAKQQPTRPVHFIHAAENGDVHAFRDEV 310 (399)
T ss_pred HHHHHCCCCCCEEEE-ECCCEEEEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 999838999988999-616503672687-888679995376733599999999970999857999956987988889999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCC--------CCCCCCCHH
Q ss_conf 9988753321012468759998105788--------776672168
Q gi|254780364|r 165 MHEISQDEILKDLIGQKLKFYRTVTQED--------YLYKGRITN 201 (224)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~isre~--------~~~~GrIt~ 201 (224)
++|+++++ ||+++.+.|+.. ....|||+.
T Consensus 311 ~~La~~~p--------~l~~~~~ys~p~~~d~~~~~~~~~Gri~~ 347 (399)
T PRK13289 311 RALAARHP--------NLKAHTWYREPTEADRAGGDFDSEGLMDL 347 (399)
T ss_pred HHHHHHCC--------CCEEEEEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 99997589--------94899997888710135777674688799
No 24
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=9.4e-39 Score=256.91 Aligned_cols=161 Identities=30% Similarity=0.524 Sum_probs=144.6
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCC--CCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECC-CCCC
Q ss_conf 7342117898998479986999980789997--389857880314586110556432056677760179996157-6765
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPKSFR--FRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDK-GFFT 85 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~--f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~-g~~s 85 (224)
+.++++.+|++++++|+++++|+|++++++. |+||||++|.++..|+.++|+|||+|+|.++..+.+.+|+.+ |.+|
T Consensus 2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S 81 (266)
T COG1018 2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGS 81 (266)
T ss_pred CCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCC
T ss_conf 98538899999998228679999974888755257997389986559943788888337999983499999973899746
Q ss_pred CCCC-CCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 3100-002222210016887533564467688179996586808899999986530886338999940586454304888
Q gi|254780364|r 86 TYLQ-NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDV 164 (224)
Q Consensus 86 ~~l~-~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el 164 (224)
++|+ ++++||.+.+ .+|.|.|.++...+ .+++|||||+|||||+||+++++..++ .+++|+|++|+++++.|++|
T Consensus 82 ~~Lh~~lk~Gd~l~v-~~P~G~F~l~~~~~-~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~~~af~de- 157 (266)
T COG1018 82 NWLHDHLKVGDTLEV-SAPAGDFVLDDLPE-RKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPADLAFRDE- 157 (266)
T ss_pred HHHHHCCCCCCEEEE-ECCCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHCCHHHH-
T ss_conf 788845999999999-66887763688888-848999635368899999999997388-87899980487576111217-
Q ss_pred HHHHHHHHH
Q ss_conf 998875332
Q gi|254780364|r 165 MHEISQDEI 173 (224)
Q Consensus 165 ~~l~~~~~~ 173 (224)
+++.++++.
T Consensus 158 ~~l~~~~~~ 166 (266)
T COG1018 158 LELAAELPN 166 (266)
T ss_pred HHHHHHCCC
T ss_conf 999963877
No 25
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=6.2e-39 Score=258.02 Aligned_cols=180 Identities=17% Similarity=0.257 Sum_probs=154.4
Q ss_pred EEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCCC
Q ss_conf 8989984799869999807899---973898578803145861105564320566777-601799961576765310000
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQNI 91 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~~ 91 (224)
+|++++++|+++++|+|+.+++ +.|+||||++|.++..|+.+.|+||++|+|.++ .+.+.|+++++|.+|++|+++
T Consensus 2 ~lv~~~~~t~d~~~~~f~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~R~YS~~s~~~~~~~~~~~Vk~~~~G~~s~~L~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHCC
T ss_conf 87899985899289999818986467989997899983419948997678897799999899999998099972235328
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 22222100168875335644676881799965868088999999865308-86338999940586454304888998875
Q gi|254780364|r 92 QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYK-KFDEVIITHTCGRVAELQYGIDVMHEISQ 170 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~-~~~~i~l~~g~R~~~dl~~~~el~~l~~~ 170 (224)
++||.+.+ .+|.|.|.+......++++||||||||||++||+++++..+ ...+|+|+||+|+++|++|.+||++|+++
T Consensus 82 ~~Gd~l~v-~gP~G~f~~~~~~~~~~lvliagG~GItP~~s~l~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~~ 160 (234)
T cd06183 82 KPGDTVEI-RGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAKK 160 (234)
T ss_pred CCCCEEEE-ECCCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 99999998-77805367677777865999974605628999999998678878738999933877887789999999976
Q ss_pred HHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHHH
Q ss_conf 3321012468759998105788776---67216878
Q gi|254780364|r 171 DEILKDLIGQKLKFYRTVTQEDYLY---KGRITNHI 203 (224)
Q Consensus 171 ~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i 203 (224)
++ +||+++.++|+++..| .|||+..+
T Consensus 161 ~~-------~~~~~~~~~s~~~~~~~~~~g~v~~~~ 189 (234)
T cd06183 161 HP-------DRFKVHYVLSRPPEGWKGGVGFITKEM 189 (234)
T ss_pred CC-------CCEEEEEEECCCCCCCCCCCCCCCHHH
T ss_conf 88-------988999998678877676456247999
No 26
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=257.36 Aligned_cols=172 Identities=21% Similarity=0.278 Sum_probs=151.4
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCC
Q ss_conf 73421178989984799869999807899973898578803145861105564320566777-60179996157676531
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTY 87 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~ 87 (224)
..+.++++|++++.+|+++++|+|.++++++|+||||++|.+++ ..+|+|||||+|.++ .++|+|+++++|.+|++
T Consensus 88 ~~~~~~a~v~~i~~lt~dv~~l~l~~~~~~~f~aGQY~~l~~~~---~~~R~YSiAs~P~~~~~lefhIr~~~~G~~s~~ 164 (312)
T PRK05713 88 QRDGLPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDR 164 (312)
T ss_pred CCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEECC---CCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHH
T ss_conf 54663259999843789879999758997875899818998489---854554677798999748999851389808999
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 00002222210016887533564467688179996586808899999986530886338999940586454304888998
Q gi|254780364|r 88 LQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE 167 (224)
Q Consensus 88 l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l 167 (224)
+.++++||.+.+..+++|.|.++.....++++||||||||||++||+++++..+..++++|+||+|+++|+++.+|+.+|
T Consensus 165 ~~~l~~Gd~l~l~~~~g~~~~~~~~~~~rplvliAgGTGiAPi~Sml~~~l~~~~~~~v~l~~g~R~~~dly~~~el~~l 244 (312)
T PRK05713 165 ARQLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLAEPLAAL 244 (312)
T ss_pred HHHCCCCCEEEECCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHCCHHHHHHH
T ss_conf 97579999899657867745841577888779997376536789999999970999988999996887992179999999
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 875332101246875999810578
Q gi|254780364|r 168 ISQDEILKDLIGQKLKFYRTVTQE 191 (224)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~isre 191 (224)
+++++ ||++.++++++
T Consensus 245 ~~~~p--------~~~~~~~~~~~ 260 (312)
T PRK05713 245 AGRHP--------QLSVELVTAAQ 260 (312)
T ss_pred HHHCC--------CCEEEEEECCC
T ss_conf 97789--------96899996785
No 27
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=2.1e-38 Score=254.75 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=153.7
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCC-CCCC
Q ss_conf 989984799869999807899973898578803145861105564320566777-60179996157676531000-0222
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQN-IQPG 94 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~-~~~g 94 (224)
|++++++|+|+++|+|+.+.+++|+||||++|.+++.+ ..|+|||+|+|.++ .+++.|+++++|.+|++|++ +++|
T Consensus 1 vv~~~~~t~d~~~~~l~~~~~~~f~pGQ~v~l~i~~~~--~~R~ySi~s~p~~~~~l~~~i~~~~~G~~S~~L~~~l~~G 78 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEPG 78 (232)
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEECCCC--EEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCC
T ss_conf 95799917990999998299886089806999989901--2688886528999987999999943992688998648999
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22100168875335644676881799965868088999999865308--8633899994058645430488899887533
Q gi|254780364|r 95 DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYK--KFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~--~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
|.+.+ .+|.|.|++... ..++++||||||||||++||+++++..+ ..++++|+||+|+++|++|.+||.+|.++++
T Consensus 79 d~v~v-~gP~G~f~~~~~-~~~~~vliAgG~GItP~~s~l~~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~ 156 (232)
T cd06190 79 DELEL-DGPYGLAYLRPD-EDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVALGA 156 (232)
T ss_pred CEEEE-EECCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 99999-954567411677-8997899984767335999999999759788972999996099899544999999987389
Q ss_pred HHCCCCCCCEEEEEEECCCCC-------CCCCCCHHHHHC-------CCHHHHCCCCCC
Q ss_conf 210124687599981057887-------766721687858-------606996787978
Q gi|254780364|r 173 ILKDLIGQKLKFYRTVTQEDY-------LYKGRITNHILS-------GEFYRNMGLSPL 217 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~isre~~-------~~~GrIt~~i~~-------g~l~~~~~l~~~ 217 (224)
||++++++|++.. ...|++++.+.. ......||+++|
T Consensus 157 --------~~~~~~~~s~~~~~~~~~~~~~~G~v~~~~~~~~~~~~~~~~~yiCGP~~m 207 (232)
T cd06190 157 --------RLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGDRLAEFEFYFAGPPPM 207 (232)
T ss_pred --------CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf --------969999988898555556667657599999866568878949999499999
No 28
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.8e-38 Score=255.19 Aligned_cols=186 Identities=23% Similarity=0.376 Sum_probs=152.5
Q ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCC-CCEEEEEEECCCCCCCCCEEEEEEECC-CCCCCCCCCC
Q ss_conf 17898998479986999980789997389857880314586-110556432056677760179996157-6765310000
Q gi|254780364|r 14 CESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNG-RPIFRAYSIASPCRDDKLEFCSIKVDK-GFFTTYLQNI 91 (224)
Q Consensus 14 ~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g-~~~~R~ySiaS~p~~~~~~~~i~~~~~-g~~s~~l~~~ 91 (224)
..||++++++|+|+++|+|+.|++++|+||||+.|.++..| +..+|+|||+|+|.++.+++.|+++++ |++|++++++
T Consensus 2 ~l~v~~i~~~t~dv~~~~l~~p~~~~f~pGQ~v~l~l~~~g~~~~~R~ySi~s~p~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHC
T ss_conf 01999999819891999998698789699966999983499845667873025899980899999878998365899747
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 22222100168875335644676881799965868088999999865308863389999405864543048889988753
Q gi|254780364|r 92 QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
++||.+.+ .+|.|.|... .+.+|||||||||||+||+++++..+...+++|+||+|+++|++|.+||+++.
T Consensus 82 ~~Gd~v~v-~gP~G~f~~~-----~~~lliagG~GItP~~sml~~l~~~~~~~~~~l~~~~r~~~d~~~~~el~~~~--- 152 (218)
T cd06196 82 QPGDTLLI-EDPWGAIEYK-----GPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDIILKDELEKML--- 152 (218)
T ss_pred CCCCCEEE-ECCCCCCCCC-----CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH---
T ss_conf 79990389-3871676327-----86099965756026999999999729989989999689888988999997500---
Q ss_pred HHHCCCCCCCEEEEEEECCCCC--CCCCCCHHH-HHC-----CCHHHHCCCCCC
Q ss_conf 3210124687599981057887--766721687-858-----606996787978
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDY--LYKGRITNH-ILS-----GEFYRNMGLSPL 217 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~--~~~GrIt~~-i~~-----g~l~~~~~l~~~ 217 (224)
+++++.++|++.. .++|||++. +++ ..-...||+++|
T Consensus 153 ---------~~~~~~~~s~~~~~~~~~grv~~~~l~~~~~~~~~~vy~CGp~~m 197 (218)
T cd06196 153 ---------GLKFINVVTDEKDPGYAHGRIDKAFLKQHVTDFNQHFYVCGPPPM 197 (218)
T ss_pred ---------CCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCHHH
T ss_conf ---------687899996689877505831799996128999998999499999
No 29
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=100.00 E-value=4.7e-39 Score=258.74 Aligned_cols=189 Identities=17% Similarity=0.325 Sum_probs=165.2
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCC----CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 2117898998479986999980789----997389857880314586110556432056677760179996157676531
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPK----SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTY 87 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~----~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~ 87 (224)
|.+.||.+++++|+|..+++|+.|+ .|+|.||||++|+...+|+.++|+||||+.+..+.+...|+++.+|.+|+|
T Consensus 1 Fh~L~VA~V~r~t~dAv~i~FevP~eL~~~Y~F~pGQ~l~Lk~~~dG~e~RRSYSIC~~~~~~~~rvAvk~~~GG~FS~w 80 (371)
T TIGR02160 1 FHALTVAEVRRLTADAVEISFEVPEELAEDYRFEPGQHLTLKAEVDGEELRRSYSICDAPAPGEIRVAVKKIEGGLFSTW 80 (371)
T ss_pred CCCCCCHHHHCCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEHH
T ss_conf 98752213210571160684147835787504688934554200077411302222167798963388997289711321
Q ss_pred CCC--CCCCCCCEECCCCCCCCCCCCCCC-------------CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 000--022222100168875335644676-------------88179996586808899999986530886338999940
Q gi|254780364|r 88 LQN--IQPGDTILLHKKSTGDLILDSLIP-------------GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTC 152 (224)
Q Consensus 88 l~~--~~~gd~~~~~~~p~g~f~~~~~~~-------------~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~ 152 (224)
+.+ ...||++.+.. |.|.|..+-..+ .++.|+||+|||||||+||+++-++.++...++|+|||
T Consensus 81 a~d~Gir~GdtlEVM~-P~G~F~~~~~~~~lndaetiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~N 159 (371)
T TIGR02160 81 ANDEGIRAGDTLEVMA-PQGRFTSKLDAERLNDAETIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGN 159 (371)
T ss_pred HHCCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 1118704488788716-789778888722000256888860689689998178705899999987406995208999617
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC---CCCCCHHHHHCCCHHHHC
Q ss_conf 586454304888998875332101246875999810578877---667216878586069967
Q gi|254780364|r 153 GRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL---YKGRITNHILSGEFYRNM 212 (224)
Q Consensus 153 R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~---~~GrIt~~i~~g~l~~~~ 212 (224)
|..++++|.++|..|..+|| .+|+++.++|||.-. .+|||. .++|...+
T Consensus 160 r~~~~vMFa~~L~DLKd~yp-------~Rf~l~~vlSrE~~~~~ll~GRlD----~ekl~~L~ 211 (371)
T TIGR02160 160 RRSASVMFAEELADLKDKYP-------QRFALLHVLSREEREAPLLSGRLD----GEKLRALL 211 (371)
T ss_pred CCCCCHHHHHHHHHHHCCHH-------HHHHHHHHHCCCCCCCCCCCCCCC----HHHHHHHH
T ss_conf 88872778998987631204-------578998663121113641024227----89999885
No 30
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=9.4e-37 Score=244.66 Aligned_cols=170 Identities=27% Similarity=0.427 Sum_probs=149.4
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC-CCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 8998479986999980789997389857880314586110556432056677-760179996157676531000022222
Q gi|254780364|r 18 ISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD-DKLEFCSIKVDKGFFTTYLQNIQPGDT 96 (224)
Q Consensus 18 ~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~-~~~~~~i~~~~~g~~s~~l~~~~~gd~ 96 (224)
++++++|+++++|+++.++.++|+||||+.|.++..|+..+|+|||+|+|.+ +.+.+.|+++++|.+|++|+++.+|+.
T Consensus 1 ~~~~~~t~d~~~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~~~~~~ik~~~~G~~s~~L~~l~~G~~ 80 (223)
T cd00322 1 VATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKPGDE 80 (223)
T ss_pred CCCEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCHHHCCCCCCCE
T ss_conf 97247589929999987998885998349999645995657888766269999989999999899985730222799999
Q ss_pred CEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10016887533564467688179996586808899999986530886338999940586454304888998875332101
Q gi|254780364|r 97 ILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKD 176 (224)
Q Consensus 97 ~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~ 176 (224)
+.+ .+|.|.|.+... ..++++||||||||||++||++++...+...+++|+||+|+.+|++|.+||.+|+++++
T Consensus 81 v~v-~gP~G~f~~~~~-~~~~~vliagG~GitP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~~---- 154 (223)
T cd00322 81 VEV-SGPGGDFFLPLE-ESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEELAKEGP---- 154 (223)
T ss_pred EEE-EECCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC----
T ss_conf 999-937765321467-99878999778661469999999997488886399862489789678999999997589----
Q ss_pred CCCCCEEEEEEECCCCCCCCC
Q ss_conf 246875999810578877667
Q gi|254780364|r 177 LIGQKLKFYRTVTQEDYLYKG 197 (224)
Q Consensus 177 ~~~~~~~~~~~isre~~~~~G 197 (224)
+++++.+++++...+.+
T Consensus 155 ----~~~~~~~~~~~~~~~~~ 171 (223)
T cd00322 155 ----NFRLVLALSRESEAKLG 171 (223)
T ss_pred ----CEEEEEEECCCCCCCCC
T ss_conf ----98999998778767656
No 31
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=7.5e-37 Score=245.25 Aligned_cols=185 Identities=23% Similarity=0.348 Sum_probs=146.1
Q ss_pred EEEEEECCCCEEEEEEECCC----CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCCC
Q ss_conf 98998479986999980789----99738985788031458611055643205667776-01799961576765310000
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPK----SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDK-LEFCSIKVDKGFFTTYLQNI 91 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~----~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~-~~~~i~~~~~g~~s~~l~~~ 91 (224)
|++++++|+++.+|+|+.++ .++|+||||++|++|+.++ |||||+|+|.++. +.+.++++ |.+|++|+++
T Consensus 1 v~~i~~et~~v~~~~l~~~~~~~~~~~f~pGQfv~l~v~~~~~---~p~Si~s~~~~~~~l~i~vk~~--G~~T~~L~~l 75 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGE---APISISSDPTRRGPLELTIRRV--GRVTEALHEL 75 (253)
T ss_pred CEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCE---EEEEEECCCCCCCEEEEEEEEE--CCCCHHHHCC
T ss_conf 9699977999699999947988778895989559999799998---9898744889999899999996--7865333238
Q ss_pred CCCCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 222221001688753-35644676881799965868088999999865308-8633899994058645430488899887
Q gi|254780364|r 92 QPGDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYK-KFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~-~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
++||.+.+ .+|.|. |.+++. +.++++|||||+||||++||+++++..+ ..++++|+||+|+++|++|.+|+++|++
T Consensus 76 ~~Gd~l~v-~GP~G~~F~~~~~-~~~~~lliagG~GiaPl~s~~~~l~~~~~~~~~v~l~~g~r~~~~~~~~del~~l~~ 153 (253)
T cd06221 76 KPGDTVGL-RGPFGNGFPVEEM-KGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAK 153 (253)
T ss_pred CCCCEEEE-ECCCCCCCCCCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCHHHHHHHHH
T ss_conf 99999999-7067887637646-897689995462566689999999972666775799996398798120999999871
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHHHHCCC------HHHHCCCCCC
Q ss_conf 53321012468759998105788776---672168785860------6996787978
Q gi|254780364|r 170 QDEILKDLIGQKLKFYRTVTQEDYLY---KGRITNHILSGE------FYRNMGLSPL 217 (224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i~~g~------l~~~~~l~~~ 217 (224)
+. +++++.++++.+..| +|+||+++.+.. ....||+++|
T Consensus 154 ~~---------~~~~~~~~~~~~~~~~G~~G~vt~~l~~~~~~~~~~~vy~CGP~pM 201 (253)
T cd06221 154 RS---------DVEVILTVDRAEEGWTGNVGLVTDLLPELTLDPDNTVAIVCGPPIM 201 (253)
T ss_pred CC---------CCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 47---------9799999978987758766858899987377868859999399999
No 32
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.8e-34 Score=230.71 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=130.9
Q ss_pred EECCCCEEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCC-CCCCCCC
Q ss_conf 8479986999980789-99738985788031458611055643205667776-0179996157676531000-0222221
Q gi|254780364|r 21 KHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDK-LEFCSIKVDKGFFTTYLQN-IQPGDTI 97 (224)
Q Consensus 21 ~~~T~~~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~-~~~~i~~~~~g~~s~~l~~-~~~gd~~ 97 (224)
..+|+|+.+|+|+++. .++|+||||++|.++..|+..+|+|||||+|.++. ++++|+++ |.+|+++++ +++||.+
T Consensus 3 ~~et~d~~t~~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~r~ySias~p~~~~~l~l~Ik~~--G~~S~~l~~~l~~Gd~v 80 (216)
T cd06198 3 VTEVRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKPGTRV 80 (216)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEC--CCCHHHHHHCCCCCCEE
T ss_conf 6667980899998699888929998189997579928887688213899999799999972--75124487559999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 00168875335644676881799965868088999999865308863389999405864543048889988753321012
Q gi|254780364|r 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL 177 (224)
Q Consensus 98 ~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~ 177 (224)
.+ .+|.|.|.++. +.++++|||||||||||+||++++++.+..++++|+||+|+.+|++|++||.+++++.
T Consensus 81 ~i-~gP~G~f~l~~--~~~~~vliAgGtGIaP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~------ 151 (216)
T cd06198 81 TV-EGPYGRFTFDD--RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAA------ 151 (216)
T ss_pred EE-ECCCCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC------
T ss_conf 99-62556871247--8998899975767770999999999759998489999469978968899999999765------
Q ss_pred CCCCEEEEEEECCCC
Q ss_conf 468759998105788
Q gi|254780364|r 178 IGQKLKFYRTVTQED 192 (224)
Q Consensus 178 ~~~~~~~~~~isre~ 192 (224)
++.|+.+.++.+
T Consensus 152 ---~~~~~~~~~~~~ 163 (216)
T cd06198 152 ---GVVLHVIDSPSD 163 (216)
T ss_pred ---CCEEEEEECCCC
T ss_conf ---978999607987
No 33
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=9.9e-34 Score=226.16 Aligned_cols=145 Identities=16% Similarity=0.259 Sum_probs=121.5
Q ss_pred EEEEECCCCEEEEEEECCCCC---CCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCC-CCCCCCC-C
Q ss_conf 899847998699998078999---73898578803145861105564320566777-6017999615767-6531000-0
Q gi|254780364|r 18 ISVKHYTDRLFRFCITRPKSF---RFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGF-FTTYLQN-I 91 (224)
Q Consensus 18 ~~~~~~T~~~~~l~l~~p~~~---~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~-~s~~l~~-~ 91 (224)
++++++|+|+++|+|+++++. .|+||||++|.+++ ..+|+|||||+|.++ .+++.|++.++|. .|+||++ +
T Consensus 1 V~i~~et~dv~sf~l~~~~~~~~~~f~pGQ~v~l~~~~---~~~R~YSias~p~~~~~~~i~Vk~~~~g~ggS~~l~~~l 77 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred CEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCC---CCEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHC
T ss_conf 95798699909999980998837885999889998599---867998568798999879999996269962669998304
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 2222210016887533564467688179996586808899999986530886338999940586454304888998875
Q gi|254780364|r 92 QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQ 170 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~ 170 (224)
++||.+.+ .+|.|.|.+++ ..++++||||||||||++||++++...+ ++++|+||+|+++|++|.+||+++++.
T Consensus 78 ~~Gd~v~v-~gP~G~F~l~~--~~~~~vliAgG~GItP~~sml~~l~~~~--~~~~L~y~~r~~~d~~f~~eL~~l~~~ 151 (211)
T cd06185 78 RVGDELEV-SAPRNLFPLDE--AARRHLLIAGGIGITPILSMARALAARG--ADFELHYAGRSREDAAFLDELAALPGD 151 (211)
T ss_pred CCCCEEEE-ECCCCEEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 69988999-73554278368--8885799963776375999999999769--979999983887992579999755059
No 34
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=3.1e-31 Score=210.87 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=148.0
Q ss_pred CCCCEEEEEEEEEECC-----CCEEEEEEECCCCCCCCCCCEEEECCCC----CCCC-EEEEEEECCCCCC-----CCCE
Q ss_conf 7342117898998479-----9869999807899973898578803145----8611-0556432056677-----7601
Q gi|254780364|r 9 AADVYCESVISVKHYT-----DRLFRFCITRPKSFRFRSGEFVMLGLIV----NGRP-IFRAYSIASPCRD-----DKLE 73 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T-----~~~~~l~l~~p~~~~f~aGQ~~~l~~~~----~g~~-~~R~ySiaS~p~~-----~~~~ 73 (224)
|..=|.+||+++.++| .+++.+.|.-...|+|.+||.+-|--|+ .|++ ..|.|||||++.. +.+.
T Consensus 5 ~~~P~~~~v~~n~~l~~~~~~~~v~hi~~d~~g~~~y~eGqsigiippg~~~~~g~p~~~RlYSIAS~~~g~~~~~~~~s 84 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLS 84 (286)
T ss_pred CCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCEECCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
T ss_conf 99985899986798248999870799999679987661588878889987655799687605786578777778997799
Q ss_pred EEEEEECC----------CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---
Q ss_conf 79996157----------67653100002222210016887533564467688179996586808899999986530---
Q gi|254780364|r 74 FCSIKVDK----------GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETY--- 140 (224)
Q Consensus 74 ~~i~~~~~----------g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~--- 140 (224)
+.|++... |.+|++|+++++||++.+.++.+.+|.+.+. +..++||||+|||||||+||+++....
T Consensus 85 l~Vrr~~~~~~~~g~~~~GvcS~yL~~lk~Gd~v~v~gp~g~~F~lP~d-~~~piIMIg~GTGIAPfRsfl~~r~~~~~~ 163 (286)
T cd06208 85 LCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPED-PNATLIMIATGTGIAPFRSFLRRLFREKHA 163 (286)
T ss_pred EEEEEEEEECCCCCCCCCEEECHHHHCCCCCCEEEEECCCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999977535888850331651665438999989998044784018889-999879994786846589999999986443
Q ss_pred --CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHHHHC
Q ss_conf --8863389999405864543048889988753321012468759998105788776---6721687858
Q gi|254780364|r 141 --KKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLY---KGRITNHILS 205 (224)
Q Consensus 141 --~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i~~ 205 (224)
+..++++||||+|+++|++|++|+++|.++++ ++|++++++|||+..+ +++|++.|.+
T Consensus 164 ~~~~~G~~~LffG~R~~~d~lY~~el~~~~~~~~-------~~~~~~~AfSRe~~~~~g~K~YVQd~l~e 226 (286)
T cd06208 164 DYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYP-------DNFRIDYAFSREQKNADGGKMYVQDRIAE 226 (286)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC-------CCEEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 4578876899994787324358999999998587-------76446999957887766562227889999
No 35
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.98 E-value=4.1e-31 Score=210.15 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=146.9
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCC-----CCCCEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 73421178989984799869999807899---973898578803145-----8611055643205667776017999615
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIV-----NGRPIFRAYSIASPCRDDKLEFCSIKVD 80 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~-----~g~~~~R~ySiaS~p~~~~~~~~i~~~~ 80 (224)
|.++.+.++++++.+|+|+..|+|.-|.+ +-...||++.++... .++.+.|+|+..|.+.+.+...+++|+.
T Consensus 32 p~~w~~~~L~~k~~vShdT~~frF~Lp~~~~~LGLPvGqHi~l~~~~~~~~g~~e~V~R~YTPiS~~~~~G~~dllIKiY 111 (303)
T PTZ00319 32 PTMFQHFKLVKKTEVTHDSFIFRFALHNETQRLGLPIGQHIVLRADCTTPFGKPETVQHSYTPISSDDDKGYVDFLIKVY 111 (303)
T ss_pred CCCCEECEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf 87615555787778179844799878898653799711169996320478887415530467887777776599999983
Q ss_pred ----------CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC--------------CCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf ----------76765310000222221001688753356446--------------768817999658680889999998
Q gi|254780364|r 81 ----------KGFFTTYLQNIQPGDTILLHKKSTGDLILDSL--------------IPGNRLYLFSMGTGIAPFASMIRD 136 (224)
Q Consensus 81 ----------~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~--------------~~~~~lvlIAgGtGiaP~~silr~ 136 (224)
+|++|++|+++.+||++.+ .||.|.|.+... ...+++.||||||||||+++++|.
T Consensus 112 ~~~~~p~fP~GGkmS~~L~~L~iGd~v~~-kGP~G~~~Y~~ng~~~i~~~~~~~~~~~~~~i~MIaGGtGITPm~Qiir~ 190 (303)
T PTZ00319 112 FKGVHPSFPNGGRLSQHLYHLKLGEKVEM-RGPVGKFEYLGNGTYTVKKGKGGLKTMHVDAFAMVAGGTGITPMMQIIHA 190 (303)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCEEEE-ECCCCCEEECCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 27888888988817678637999899999-77842307817972675046554200011136787258777929999999
Q ss_pred HHH-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC-CCCC---CCCCHHHH
Q ss_conf 653-0886338999940586454304888998875332101246875999810578-8776---67216878
Q gi|254780364|r 137 PET-YKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLY---KGRITNHI 203 (224)
Q Consensus 137 ~~~-~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre-~~~~---~GrIt~~i 203 (224)
.+. .+...+++|+||+|+++|+++++||++++++ ++|++++++|++ +..| .|||+..+
T Consensus 191 Il~~p~D~Tkv~Lly~N~te~DILlr~ELd~~~~~---------~rfkv~yvLs~~~~~~W~g~~G~I~~em 253 (303)
T PTZ00319 191 IKKNKEDPTKVFLVYGNQTERDILLRKELDEAAKD---------PRFKVWYTLDREATPEWKYGTGYVDEEM 253 (303)
T ss_pred HHCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHHC---------CCCEEEEEECCCCCCCCCCCCCEECHHH
T ss_conf 97299998279999932987987379999988525---------7815999976799998886642678999
No 36
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.98 E-value=4.3e-31 Score=209.99 Aligned_cols=172 Identities=18% Similarity=0.314 Sum_probs=139.0
Q ss_pred EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 11789899847998699998078999738985788031458611055643205667776017999615767653100002
Q gi|254780364|r 13 YCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQ 92 (224)
Q Consensus 13 ~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~ 92 (224)
.+++|++++++|+++++|+|+.+ ++++||||++|++++.|+ ||+||++. .++.+.+.++++ |..|++|++++
T Consensus 8 ~~~~I~~~~~et~~v~t~~~~~~--~~~~PGQFvmv~v~~~ge---~PiSi~~~-~~g~l~l~~~~v--G~gT~~L~~lk 79 (263)
T PRK08221 8 AASEILDITKHTDIEYTFRMAVD--GDVKPGQFFEVSLPKVGE---APISVSDI-GEGYIDLTIRRV--GKVTDEIFTLK 79 (263)
T ss_pred CCEEEEEEEECCCCEEEEEECCC--CCCCCCCEEEEEECCCCC---CEEEEECC-CCCEEEEEEEEE--CHHHHHHHCCC
T ss_conf 63799997855996399998158--997999879999589995---10588617-999699999948--87899997299
Q ss_pred CCCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 22221001688753-3564467688179996586808899999986530-886338999940586454304888998875
Q gi|254780364|r 93 PGDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETY-KKFDEVIITHTCGRVAELQYGIDVMHEISQ 170 (224)
Q Consensus 93 ~gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~-~~~~~i~l~~g~R~~~dl~~~~el~~l~~~ 170 (224)
+||.+.+. ||.|. |.++. .+++++++||||+|+||++++++++... ....+++++||+|++++++|.+++++|.+
T Consensus 80 ~Gd~l~v~-GPlGngF~~~~-~~g~~~llVgGGiGiaPl~~l~~~l~~~~~~~~~v~li~G~rs~~~l~~~~e~~~~~~- 156 (263)
T PRK08221 80 EGDKVFLR-GPYGNGFPVDT-YKGKELIVVAGGTGVAPVKGLMRYFSENPQEIKSLDLILGFKNPDDILFKEDMATWRE- 156 (263)
T ss_pred CCCEEEEE-ECCCCCCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHC-
T ss_conf 98999997-01489705641-4893399982663222369999999862303652899995687366017999997632-
Q ss_pred HHHHCCCCCCCEEEEEEECCCCCCCC---CCCHHHHHC
Q ss_conf 33210124687599981057887766---721687858
Q gi|254780364|r 171 DEILKDLIGQKLKFYRTVTQEDYLYK---GRITNHILS 205 (224)
Q Consensus 171 ~~~~~~~~~~~~~~~~~isre~~~~~---GrIt~~i~~ 205 (224)
++.++.|++..+.+|+ |+||++|.+
T Consensus 157 ----------~~~~~~t~D~g~~g~~G~vG~vt~~l~~ 184 (263)
T PRK08221 157 ----------KINLILTLDEGEEDYRGNVGLVTKYIPE 184 (263)
T ss_pred ----------CCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf ----------4559999778988867734607788987
No 37
>KOG0534 consensus
Probab=99.97 E-value=1.2e-30 Score=207.23 Aligned_cols=183 Identities=19% Similarity=0.280 Sum_probs=158.2
Q ss_pred CCEEEEEEEEEECCCCEEEEEEECC---CCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC-CCCEEEEEEECCCCCCC
Q ss_conf 4211789899847998699998078---9997389857880314586110556432056677-76017999615767653
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD-DKLEFCSIKVDKGFFTT 86 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l~l~~p---~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~-~~~~~~i~~~~~g~~s~ 86 (224)
..++..+++++.+|+|+..|+|..| ..+....|||+.+.++..|+.+.||||..|.+.+ +.+.+.|+...+|.+|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred CEEEEEEEEEEECCCCCEEEEEECCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCH
T ss_conf 16888878887136775137971698501327655258999962898689970687467134650899999526886537
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf 1000022222100168875335644676881799965868088999999865308-863389999405864543048889
Q gi|254780364|r 87 YLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYK-KFDEVIITHTCGRVAELQYGIDVM 165 (224)
Q Consensus 87 ~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~-~~~~i~l~~g~R~~~dl~~~~el~ 165 (224)
+|++++.||.+.+ +||.|.|.++.. ..+++.|||||||||||+++++..+... ...++.|+|++++++|+++++||+
T Consensus 130 ~l~~LkiGd~ve~-rGP~G~~~~~~~-~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~DILlr~eL~ 207 (286)
T KOG0534 130 HLDSLKIGDTVEF-RGPIGEFKYDPQ-KAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDDILLREELE 207 (286)
T ss_pred HHHCCCCCCEEEE-ECCCCCEEECCC-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 8865999998999-668433576798-86458999345564169999999736987776899999517865541689999
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHH
Q ss_conf 988753321012468759998105788776---6721687
Q gi|254780364|r 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLY---KGRITNH 202 (224)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~ 202 (224)
.|+.++| ++|..+.++++.+..| .||||.-
T Consensus 208 ~la~~~p-------~rf~~~y~v~~~~~~w~~~~g~It~~ 240 (286)
T KOG0534 208 ELASKYP-------ERFKVWYVVDQPPEIWDGSVGFITKD 240 (286)
T ss_pred HHHHHCC-------CEEEEEEEECCCCCCCCCCCCCCCHH
T ss_conf 9865181-------01899999747721355766743889
No 38
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.97 E-value=2.3e-31 Score=211.65 Aligned_cols=174 Identities=22% Similarity=0.362 Sum_probs=132.8
Q ss_pred CCEEEEEEEEEECCCCEEEE--EEECCC---CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCC
Q ss_conf 42117898998479986999--980789---9973898578803145861105564320566777601799961576765
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRF--CITRPK---SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFT 85 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l--~l~~p~---~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s 85 (224)
--+.++|++++++|+++++| +++.|+ .|.|+||||++|++++.|+ +|+||+|++.+++...+++|+. |..|
T Consensus 7 ~p~~~~i~~~~~~t~~~~~f~l~~~~p~ia~~f~~~PGQFv~v~v~g~ge---~PiSi~~~~~~~g~l~~~~r~v-G~~T 82 (292)
T PRK08345 7 ALYRAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE---VPISICSSPTRKGFFELCIRRA-GRVT 82 (292)
T ss_pred CCCEEEEEEEHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC---CCEEEECCCCCCCEEEEEEEEE-CHHH
T ss_conf 68206999843249870599999627120345860899859999689996---1058715688899899999821-8699
Q ss_pred CCCCCCCCCCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH-CCCCCEEEEEEECCCHHHHHHHHH
Q ss_conf 310000222221001688753-356446768817999658680889999998653-088633899994058645430488
Q gi|254780364|r 86 TYLQNIQPGDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPET-YKKFDEVIITHTCGRVAELQYGID 163 (224)
Q Consensus 86 ~~l~~~~~gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~-~~~~~~i~l~~g~R~~~dl~~~~e 163 (224)
..|+++++||.+.+. ||.|. |.+++ .++++++|||||+|+||+++++++++. +....+++++||+|+.+|++|++|
T Consensus 83 ~~L~~lk~Gd~l~v~-GPlG~gf~~~~-~~~~~v~lVaGGiGiaPl~~~~~~~l~~~~~~~~v~~i~GaR~~~dllf~~E 160 (292)
T PRK08345 83 TVVHRLKEGDIVGVR-GPYGNGFPVDE-MEGMDLLLIAGGLGMAPLRSVLLYAMDNRGKYGNITLIYGAKYYEDLLFYDE 160 (292)
T ss_pred HHHHCCCCCCEEEEE-ECCCCCEECCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 999628999999997-23578630410-2695199994254545138999999872155686699997188798321898
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEECCCC--CCCCCC
Q ss_conf 89988753321012468759998105788--776672
Q gi|254780364|r 164 VMHEISQDEILKDLIGQKLKFYRTVTQED--YLYKGR 198 (224)
Q Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~isre~--~~~~Gr 198 (224)
+.++.++.. ++.....++.++ .++.|+
T Consensus 161 ~~~~~~~~~--------~~~~~~~~~~dd~~~g~~g~ 189 (292)
T PRK08345 161 LIKDLAEAE--------NVKIIQSVTRDPEWPGCHGL 189 (292)
T ss_pred HHHHHHHCC--------CCCEEEEEECCCCCCCCCCC
T ss_conf 887653203--------44128999517999865054
No 39
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.97 E-value=1.3e-29 Score=200.85 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=145.1
Q ss_pred EEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCCC
Q ss_conf 178989984799869999807899-973898578803145861105564320566777-601799961576765310000
Q gi|254780364|r 14 CESVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQNI 91 (224)
Q Consensus 14 ~~~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~~ 91 (224)
..+|++++.+|++++.|+|..+.. ++|+||||++|++|. ..+||||++|.+.++ .++++++..+.|.+|.+++.+
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCC---CCEEEEECCCCCCCCCCEEEEEEEEECCHHHHHHHHC
T ss_conf 6279999970797499999676534667999789999189---9678732256766678169999997188789999744
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 22222100168875335644676881799965868088999999865308863389999405864543048889988753
Q gi|254780364|r 92 QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
+.||.+.+ .||.|.+++.+. .++++++||||||+||++++++++...+...+++++||+|+++|+++.+|++++..+
T Consensus 86 k~gd~i~v-~GP~G~~~~~~~-~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~- 162 (252)
T COG0543 86 KEGDKIRV-RGPLGNGFLREK-IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK- 162 (252)
T ss_pred CCCCEEEE-ECCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHHHCC-
T ss_conf 67988999-756778713345-687299997634688899999999866898558999941767872538999974166-
Q ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCC-HHHHH
Q ss_conf 3210124687599981057887766721-68785
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRI-TNHIL 204 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~~~~GrI-t~~i~ 204 (224)
.++++++..+.+.+|.+ ++.+.
T Consensus 163 -----------~~~~~~~~~~~G~~G~v~~~~~~ 185 (252)
T COG0543 163 -----------EVHPVTDDGWKGRKGFVTTDVLK 185 (252)
T ss_pred -----------EEEEEECCCCCCCCCCCCHHHHH
T ss_conf -----------07998279987644741289986
No 40
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.97 E-value=3e-30 Score=204.86 Aligned_cols=199 Identities=18% Similarity=0.317 Sum_probs=160.0
Q ss_pred CCCCHHCCCCCE-----EEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCCCC--------------------
Q ss_conf 544322073421-----17898998479986999980789--997389857880314586--------------------
Q gi|254780364|r 2 CDVSSELAADVY-----CESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIVNG-------------------- 54 (224)
Q Consensus 2 ~~~~~~ip~~~~-----~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~~g-------------------- 54 (224)
-|++.+||++.| +.+|++....+-=|++|.|..|+ ..+||||-|++|.+|...
T Consensus 114 ~Dm~i~~~Ee~fgvk~WeC~V~SN~N~ATFIKEL~l~~p~g~~v~FkaGgY~Qi~~P~~~v~y~Dfd~~~~~~Yr~DW~k 193 (425)
T TIGR01941 114 QDMSIEIPEEVFGVKKWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEVPAHKVKYADFDQTIQPEYRGDWEK 193 (425)
T ss_pred CCCEEEECEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHCCCHHH
T ss_conf 48778732034231101347877798513678988887888830435786478861672331231011012123166325
Q ss_pred ---------------CCEEEEEEECCCCCCCCCEEEEEE-----------------ECCCCCCCCCCCCCCCCCCEECCC
Q ss_conf ---------------110556432056677760179996-----------------157676531000022222100168
Q gi|254780364|r 55 ---------------RPIFRAYSIASPCRDDKLEFCSIK-----------------VDKGFFTTYLQNIQPGDTILLHKK 102 (224)
Q Consensus 55 ---------------~~~~R~ySiaS~p~~~~~~~~i~~-----------------~~~g~~s~~l~~~~~gd~~~~~~~ 102 (224)
+...|+||+||.|.|..+..+=+| ++.|.+|||++++++||.+.+. |
T Consensus 194 f~~f~~~~~~~~lpae~~~rAYSmAnYP~E~~~i~lNvRIAtPP~~n~~~~~w~~~~p~G~~SSYifsLKpGDKv~~s-G 272 (425)
T TIGR01941 194 FNLFDLVSKVDQLPAEETVRAYSMANYPEEKGIIKLNVRIATPPFDNGKANKWNSDIPPGIMSSYIFSLKPGDKVTVS-G 272 (425)
T ss_pred CCCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEE-C
T ss_conf 062547774033564102433202347241787799988418888767643234678987213337744798777997-7
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH-HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 875335644676881799965868088999999-8653088633899994058645430488899887533210124687
Q gi|254780364|r 103 STGDLILDSLIPGNRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQK 181 (224)
Q Consensus 103 p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr-~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~ 181 (224)
|+|.|+..+. .+.+|||+||.|.||+||-|- .+...+..|+|.+=||||+..|.+|.+++++|.+++| |
T Consensus 273 PfGefF~kDt--daemvFigGGAGmap~RshIld~L~~lks~Rk~sfWYGARS~~E~fY~edf~~L~~e~p--------N 342 (425)
T TIGR01941 273 PFGEFFAKDT--DAEMVFIGGGAGMAPMRSHILDLLKRLKSKRKISFWYGARSKREIFYEEDFDQLEAENP--------N 342 (425)
T ss_pred CCCCCEEEEC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCC--------C
T ss_conf 8885302457--86438973373540368999999860023650245536521244322444788986489--------9
Q ss_pred EEEEEEECCC--CCCCCC----------CCHHHHHCCCHHHH
Q ss_conf 5999810578--877667----------21687858606996
Q gi|254780364|r 182 LKFYRTVTQE--DYLYKG----------RITNHILSGEFYRN 211 (224)
Q Consensus 182 ~~~~~~isre--~~~~~G----------rIt~~i~~g~l~~~ 211 (224)
|+||-+||.+ +..|+| .|-..|-+..|..|
T Consensus 343 F~~H~aLSdP~PEDnw~Gwdkddp~~tgFih~vl~~nyLk~h 384 (425)
T TIGR01941 343 FKWHVALSDPQPEDNWTGWDKDDPTYTGFIHNVLYENYLKDH 384 (425)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 379998548688510067776786102477877764232137
No 41
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.97 E-value=1.6e-29 Score=200.31 Aligned_cols=185 Identities=14% Similarity=0.122 Sum_probs=145.3
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECC---CCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCC
Q ss_conf 34211789899847998699998078--999738985788031---45861105564320566777-6017999615767
Q gi|254780364|r 10 ADVYCESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGL---IVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGF 83 (224)
Q Consensus 10 ~~~~~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~---~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~ 83 (224)
.++.+.++.++.++|+|+..|||.-+ +.+.-.+.--++.+. ....+...|+|+..|.+.+. .+.+.|+++++|.
T Consensus 50 ~k~~~~~L~ev~~~thdt~lfRF~l~~~~~~~l~~~s~l~~~~~~g~~~~~~~~RpYTPIS~~~~~G~fDLlVK~Yp~Gk 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 45246574552442566247999668600158611145332241278767677468578998998625999999689995
Q ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC------CCCCEEEEEEECCCHHH
Q ss_conf 653100002222210016887533564467688179996586808899999986530------88633899994058645
Q gi|254780364|r 84 FTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETY------KKFDEVIITHTCGRVAE 157 (224)
Q Consensus 84 ~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~------~~~~~i~l~~g~R~~~d 157 (224)
+|++++.+++||++.+. ||.+.|.+... .-+++.|||||||||||+.++|..+.. +...+|.|+|++++++|
T Consensus 130 mS~hl~~Lk~GDtl~fk-GP~~k~~ykpN-~~k~IgMIAGGTGITPMyQvir~Il~nP~d~~~~DkTkvsLlyaN~Te~D 207 (325)
T PTZ00274 130 MTNHLFGMHVGDKLLFR-SVTFKIQYRPN-RWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERH 207 (325)
T ss_pred HHHHHHCCCCCCEEEEE-CCCCCCCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHH
T ss_conf 45576358999989897-88767753698-66668897358776679999999971976567678758999992298788
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CCCC---CCCCHHHH
Q ss_conf 4304888998875332101246875999810578--8776---67216878
Q gi|254780364|r 158 LQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DYLY---KGRITNHI 203 (224)
Q Consensus 158 l~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~~~~---~GrIt~~i 203 (224)
++.++||++|+++|| ++|+++++|++. +..| .|+||.-+
T Consensus 208 ILLk~ELD~la~~yP-------~rFkv~Y~Ld~p~~p~~W~g~~G~ITkEm 251 (325)
T PTZ00274 208 ILLKGLFDDLARRYS-------NRFKVYYTIDQAVEPDKWNHFLGYVTKEM 251 (325)
T ss_pred HHHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCCCCCEECHHH
T ss_conf 001999999998788-------85799999689999989857767648999
No 42
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=3.4e-29 Score=198.39 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=133.4
Q ss_pred EEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCC-EEEEEEECCCCC-CCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 989984799869999807899-9738985788031458611-055643205667-7760179996157676531000022
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRP-IFRAYSIASPCR-DDKLEFCSIKVDKGFFTTYLQNIQP 93 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~-~~R~ySiaS~p~-~~~~~~~i~~~~~g~~s~~l~~~~~ 93 (224)
|++++++|++++.|+|+.|+. ..|+||||++|++++.+++ .+|||||+|.+. ++.+.+.++.+ |..|.+|.++++
T Consensus 1 Iv~~~~l~~~~~~l~l~~p~~a~~~~PGQFv~v~~~~~~~~~l~rP~Si~~~~~~~~~l~~~v~~v--G~~T~~l~~l~~ 78 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRLLSELKA 78 (246)
T ss_pred CEEEEEECCCEEEEEEECCCHHHCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEE--CHHHHHHHCCCC
T ss_conf 965699349979999976874315899835999968999731214169840158999999999994--826889961899
Q ss_pred CCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2221001688753-356446768817999658680889999998653088633899994058645430488899887533
Q gi|254780364|r 94 GDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 94 gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
||.+.+. +|.|. |.+.+ ..++++|||||+|+||++++++.+...+ .+++++||+|++++++|.+|+++|..
T Consensus 79 Gd~v~v~-GP~G~~f~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~~i~G~r~~~~l~~~~el~~~~~--- 150 (246)
T cd06218 79 GDELDVL-GPLGNGFDLPD--DDGKVLLVGGGIGIAPLLFLAKQLAERG--IKVTVLLGFRSADDLFLVEEFEALGA--- 150 (246)
T ss_pred CCEEEEE-ECCCCCEECCC--CCCCEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHHHHCC---
T ss_conf 7989999-53578567447--8972999965731543999999999749--92899997477688544999997379---
Q ss_pred HHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 210124687599981057887766721687858
Q gi|254780364|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS 205 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~ 205 (224)
+. +.+..+.+.+.+|+||++|++
T Consensus 151 --------~v--~i~tdDGs~G~~G~vtd~l~~ 173 (246)
T cd06218 151 --------EV--YVATDDGSAGTKGFVTDLLKE 173 (246)
T ss_pred --------CE--EEEECCCCCCCEEEHHHHHHH
T ss_conf --------29--999478999733654798986
No 43
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.96 E-value=1.2e-28 Score=194.93 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=126.9
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 78989984799869999807899973898578803145861105564320566777601799961576765310000222
Q gi|254780364|r 15 ESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPG 94 (224)
Q Consensus 15 ~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~g 94 (224)
.||.++.++|+++++|+|+.+ |+|+||||++|++++.++ ||||+++.+.+ ..+.++++ |..|.+|+++++|
T Consensus 1 ~~i~ev~~et~~v~t~~l~~~--~~~~pGQFv~l~~~~~~~---~p~si~~~~~~--~~~~v~~v--G~~T~~l~~~~~G 71 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGVDE---IPMSLSYIDGP--NSITVKKV--GEATSALHDLKEG 71 (233)
T ss_pred CEEEEEEHHCCCCEEEEECCC--CCCCCCCEEEEEECCCCC---EEEEEECCCCC--CEEEEEEE--CHHHHHHHCCCCC
T ss_conf 989997121898289998888--984899759999899994---67899668996--47999997--8379899708999
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22100168875335644676881799965868088999999865308863389999405864543048889988753321
Q gi|254780364|r 95 DTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~ 174 (224)
|.+.+. +|.|..+.. ++++++|||||+|+||+++|++++... .+++++||+|+.++++|.++++.+.
T Consensus 72 d~i~v~-GP~G~~f~~---~~~~~llvaGG~GiaPl~~l~~~l~~~---~~v~~~~G~rs~~~l~~~~el~~~~------ 138 (233)
T cd06220 72 DKLGIR-GPYGNGFEL---VGGKVLLIGGGIGIAPLAPLAERLKKA---ADVTVLLGARTKEELLFLDRLRKSD------ 138 (233)
T ss_pred CEEEEE-ECCCCCCCC---CCCEEEEEECCEEHHHHHHHHHHHHHC---CCEEEEEECCCHHHHHHHHHHHHHC------
T ss_conf 989998-335774012---798199991746467779999999866---9879999758768865699886327------
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 012468759998105788776672168785
Q gi|254780364|r 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 175 ~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
++ +.+..+.+.+++|+||++++
T Consensus 139 ------~~--~i~tdDGs~G~kG~Vt~~l~ 160 (233)
T cd06220 139 ------EL--IVTTDDGSYGFKGFVTDLLK 160 (233)
T ss_pred ------CE--EEEECCCCCCCCCCHHHHHH
T ss_conf ------16--89945788886436768798
No 44
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.96 E-value=4.3e-28 Score=191.61 Aligned_cols=171 Identities=18% Similarity=0.261 Sum_probs=133.6
Q ss_pred CCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 42117898998479986999980789997389857880314586110556432056677760179996157676531000
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQN 90 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~ 90 (224)
+-..++|++++++|+++++|+|+.+ +.|+||||++|+++..+...+|||||++.. ++.+.+.++.+ |..|.+|++
T Consensus 3 ~p~~~~Iv~~~~~~~~i~~l~l~~~--~~~~PGQFv~l~~~~~~~~l~rP~Si~~~~-~~~~~i~v~~v--G~gT~~l~~ 77 (248)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGD--FVFKPGQFVMVWVWDDPGLLERPISISDID-KNENTILYRAV--GEGTKKLSK 77 (248)
T ss_pred CCEEEEEEEEEEECCCEEEEEECCC--CCCCCCCEEEEEECCCCCCCCEEEEEEECC-CCEEEEEEEEE--CHHHHHHHC
T ss_conf 7704799999995799799998466--877999779999788898443641999638-98589999998--879999961
Q ss_pred CCCCCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 0222221001688753-356446768817999658680889999998653088633899994058645430488899887
Q gi|254780364|r 91 IQPGDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 91 ~~~gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
+++||.+.+. ||.|. |.+.+ .++++++||||+|+||++++++++..+ ..++.++||+|++++++|.++++++.
T Consensus 78 l~~Gd~l~v~-GPlGngf~~~~--~~~~~llVaGGiGiAPl~~l~~~l~~~--~~~v~~i~G~r~~~~l~~~~el~~~~- 151 (248)
T PRK00054 78 LKEGDELDIR-GPLGNGFDLEK--IGGKVLLVGGGIGVAPLYELAKQLKAK--GVEVTTVLGARTKDEVIFEDEFEKYG- 151 (248)
T ss_pred CCCCCEEEEE-CCCCCCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEEECCCHHHCCHHHHHHHHC-
T ss_conf 8899989745-25688723677--896199996767457689999999972--99779999758879811799998654-
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 533210124687599981057887766721687858
Q gi|254780364|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS 205 (224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~ 205 (224)
+. ++ +......+++|++|++++.
T Consensus 152 -----------~~-~i-~tddGs~G~~G~vt~~l~~ 174 (248)
T PRK00054 152 -----------DV-YV-ATDDGSYGFKGFVTDVLDE 174 (248)
T ss_pred -----------CE-EE-EECCCCCCCCCEECHHHHH
T ss_conf -----------76-79-8067867665171031232
No 45
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.95 E-value=1.4e-26 Score=182.47 Aligned_cols=179 Identities=20% Similarity=0.284 Sum_probs=145.0
Q ss_pred CCCCEEEEEEEEEECCC----CEEEEEEECCCCC-------CCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEE
Q ss_conf 73421178989984799----8699998078999-------738985788031458611055643205667776017999
Q gi|254780364|r 9 AADVYCESVISVKHYTD----RLFRFCITRPKSF-------RFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSI 77 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~----~~~~l~l~~p~~~-------~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~ 77 (224)
.++..+.+++++++++. .++.|+|.+++.- +|++|..+.+.-| +....|.|||||.+.++.+++.|+
T Consensus 42 ~p~~~~~~L~~R~~ln~~~~~~t~ilrl~~~~~~~~~~~~p~f~aGDLl~i~Pp--~~~~~R~YSiAs~~~dg~~~l~Vr 119 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP--GSDVPRFYSLASSSSDGFLEICVR 119 (289)
T ss_pred CCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 997614389841104987789717999852645544466888887773233489--999875224043699997999999
Q ss_pred EECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHH-
Q ss_conf 6157676531000022222100168875335644676881799965868088999999865308863389999405864-
Q gi|254780364|r 78 KVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVA- 156 (224)
Q Consensus 78 ~~~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~- 156 (224)
+.++|.+|+||+.+++||.+...-.+...|.+.. +..++||||.|||||||++|+++- ....+++||||+|+++
T Consensus 120 ~~~~GlcS~~L~~L~~Gd~i~~~ir~n~~F~~P~--~~~PvImIg~GTGIAPfrgfl~~~---~~~~~~~LffG~R~~~~ 194 (289)
T cd06201 120 KHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRPAK--GAAPVILIGAGTGIAPLAGFIRAN---AARRPMHLYWGGRDPAS 194 (289)
T ss_pred ECCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHHH---HHCCCEEEEECCCCCCC
T ss_conf 6799743677715999898999983499877999--999889991786718889999976---51498499951788887
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 543048889988753321012468759998105788776672168785
Q gi|254780364|r 157 ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 157 dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
|.+|++|+++|.++-. -.++..+.||++. +.+|++.|.
T Consensus 195 D~lY~~el~~~~~~g~--------l~~l~~AfSR~~~--k~YVQd~l~ 232 (289)
T cd06201 195 DFLYEDELDQYLADGR--------LTQLHTAFSRTPD--GAYVQDRLR 232 (289)
T ss_pred CHHHHHHHHHHHHCCC--------CCEEEEEECCCCC--CCCHHHHHH
T ss_conf 6789999999997699--------5257665435887--512899999
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.95 E-value=1.6e-26 Score=182.06 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=130.9
Q ss_pred EEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 989984799869999807899-973898578803145861105564320566777-601799961576765310000222
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQNIQPG 94 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~~~~~g 94 (224)
|+++++++++++.|+|+.|+. ..++||||++|+++..+...+|||||++.+.++ .+.+.++.+ |..|.+|.++++|
T Consensus 1 I~~~~~l~~~~~~l~~~ap~~a~~~~PGQFv~v~~~~~~~~~~rP~si~~~~~~~~~i~~~v~~v--G~~T~~l~~l~~G 78 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIR--GPKTKLIAELKPG 78 (243)
T ss_pred CEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEE--CHHHHHHHCCCCC
T ss_conf 92279955987999998817474089996599996898971148799887579899999999967--8579899638999
Q ss_pred CCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 221001688753-3564467688179996586808899999986530886338999940586454304888998875332
Q gi|254780364|r 95 DTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEI 173 (224)
Q Consensus 95 d~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~ 173 (224)
|.+.+. +|.|. |...+ ..++++|||||+|+||++++++++.+.+ .++.++||+|+++++++.++++....
T Consensus 79 d~l~v~-GP~G~~f~~~~--~~~~~llVaGG~GiaPl~~l~~~l~~~g--~~v~~i~g~r~~~~~~~~~~~~~~~~---- 149 (243)
T cd06192 79 EKLDVM-GPLGNGFEGPK--KGGTVLLVAGGIGLAPLLPIAKKLAANG--NKVTVLAGAKKAKEEFLDEYFELPAD---- 149 (243)
T ss_pred CEEEEE-CCCCCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHHHHCC----
T ss_conf 999877-45568703467--8976999956734165999999998779--96699999388899423899997288----
Q ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1012468759998105788776672168785
Q gi|254780364|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 174 ~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
+ .+.+.+..+..++|++|+++.
T Consensus 150 -------~--~~~~tddgs~g~~g~v~~~~~ 171 (243)
T cd06192 150 -------V--EIWTTDDGELGLEGKVTDSDK 171 (243)
T ss_pred -------E--EEEEECCCCCCCCCEEEEEEE
T ss_conf -------4--889836887763517867630
No 47
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.94 E-value=7.7e-26 Score=177.85 Aligned_cols=188 Identities=17% Similarity=0.250 Sum_probs=144.4
Q ss_pred EEEEEEEEEECCC-----CEEEEEEECC-CCCCCCCCCEEEECCCC---CCCC-EEEEEEECCCCCCC-----CCEEEEE
Q ss_conf 1178989984799-----8699998078-99973898578803145---8611-05564320566777-----6017999
Q gi|254780364|r 13 YCESVISVKHYTD-----RLFRFCITRP-KSFRFRSGEFVMLGLIV---NGRP-IFRAYSIASPCRDD-----KLEFCSI 77 (224)
Q Consensus 13 ~~~~V~~~~~~T~-----~~~~l~l~~p-~~~~f~aGQ~~~l~~~~---~g~~-~~R~ySiaS~p~~~-----~~~~~i~ 77 (224)
..+||+...++|+ |+..+.|.-. .+|++.-||-+-|--|+ .|++ ..|-|||||+...+ .+.+.++
T Consensus 143 ~~atv~gn~r~t~~~~~~d~~hivldfg~~~fpvlEGQSiGIIPPG~d~~GkPH~~RLYSIAS~R~Gd~~~~~tvSLcVr 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred EEEEEECEEECCCCCCCCCEEEEEECCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 36899640771457887630489971689856422575764648998989984612678853675787889977889988
Q ss_pred EEC--------CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCCEE
Q ss_conf 615--------7676531000022222100168875335644676881799965868088999999865---30886338
Q gi|254780364|r 78 KVD--------KGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPE---TYKKFDEV 146 (224)
Q Consensus 78 ~~~--------~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~---~~~~~~~i 146 (224)
++. .|.+|++|+++++||++.+.+|-+..|.+.+. +..++||||+|||||||++|++.+. ..+..++.
T Consensus 223 R~~~~~~g~~~~GVcSnyLCDlkpGd~V~itGP~Gk~FLLP~D-P~a~IIMIaTGTGIAPFRafl~rr~~~~~~g~~Gk~ 301 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNH-PESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKL 301 (411)
T ss_pred EEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCCEEECCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 8356578963131630001579989989996787864558899-898869993687743379999999874303898618
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHC--CCHHHH
Q ss_conf 99994058645430488899887533210124687599981057887766721687858--606996
Q gi|254780364|r 147 IITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS--GEFYRN 211 (224)
Q Consensus 147 ~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~--g~l~~~ 211 (224)
+||||+|+.++++|.+||+++.+++ +.+...+||+....+-+|++.|.. .++.+.
T Consensus 302 wLFFGar~t~~lLY~~ele~~~kd~----------~dl~~AfSRe~~~~K~YVQDri~E~Adev~~l 358 (411)
T TIGR03224 302 MLFFGARTKEELPYFGPLQKLPKDF----------IDINFAFSRTPEQPKRYVQDAIRERAADVAAL 358 (411)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHC----------CCEEEEEECCCCCCCEEHHHHHHHHHHHHHHH
T ss_conf 9994698831155458999867625----------52589984478999542788999989999999
No 48
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.94 E-value=2.3e-26 Score=181.04 Aligned_cols=168 Identities=20% Similarity=0.229 Sum_probs=129.6
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCC-CEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8989984799869999807899-9738985788031458611055643205667776-0179996157676531000022
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDK-LEFCSIKVDKGFFTTYLQNIQP 93 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~-~~~~i~~~~~g~~s~~l~~~~~ 93 (224)
+|++++++++++|.++|+.|+- -.++||||++|+++..++ +||+||++...++. +.++++.+ |..|..|..+++
T Consensus 3 kIl~n~~l~~~~~~l~l~ap~ia~~~~PGQFvmv~~~~~~~--r~P~Si~~~d~~~g~i~~~~~vv--G~gT~~L~~l~~ 78 (281)
T PRK06222 3 KIVEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKGE--RIPLTIADYDPEKGTITIVFQAV--GKSTKELAELKE 78 (281)
T ss_pred EEEEEEEECCCEEEEEEECHHHHHHCCCCCEEEEEECCCCC--CEEEEEEEECCCCCEEEEEEEEE--CHHHHHHHHCCC
T ss_conf 79987995498799999885257138999369999799997--20158888718899999999998--858999971779
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 22210016887533564467688179996586808899999986530886338999940586454304888998875332
Q gi|254780364|r 94 GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEI 173 (224)
Q Consensus 94 gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~ 173 (224)
||.+.-+.||.|.-+.. .+.+++++||||+|+||++++++.+...+ .++.+++|+|+.+++++.++++++..
T Consensus 79 Gd~i~~i~GPlG~~f~~--~~~~~~llVgGGiGiAPl~~lak~l~~~g--~~v~~~~G~r~~~~l~~~~~~~~~~~---- 150 (281)
T PRK06222 79 GDSILDVVGPLGKPSEI--EKFGTVVCVGGGVGIAPVYPIAKALKEAG--NKVITIIGARNKDLLILEDEMKAVSD---- 150 (281)
T ss_pred CCEEEEEECCCCCCCCC--CCCCEEEEECCCCCCCCHHHHHHHHHHCC--CCEEEEECCCCHHHEEHHHHHHHHCC----
T ss_conf 99983678379887045--67853999958433122799999999749--91699975697687011999997379----
Q ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1012468759998105788776672168785
Q gi|254780364|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 174 ~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
++ +.+......+++|+||++++
T Consensus 151 -------~~--~v~TdDGS~G~~G~Vtd~l~ 172 (281)
T PRK06222 151 -------EL--YVTTDDGSYGFKGFVTDLLK 172 (281)
T ss_pred -------EE--EEECCCCCCCCCCCHHHHHH
T ss_conf -------18--99826898885220568999
No 49
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.94 E-value=8e-26 Score=177.74 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=137.7
Q ss_pred EEEEEEECCCC-----EEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECC-----CCC
Q ss_conf 89899847998-----6999980789-997389857880314586110556432056677760179996157-----676
Q gi|254780364|r 16 SVISVKHYTDR-----LFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDK-----GFF 84 (224)
Q Consensus 16 ~V~~~~~~T~~-----~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~-----g~~ 84 (224)
++.++..++|+ +|.++|++|+ +.+|+||+-+.|.-+. ....|.|||||.|.++.+++.|+++.. |.+
T Consensus 2 ~l~~r~~~np~s~g~~~~~l~l~~~~~~~~~~aGDll~I~p~~--p~~pR~YSIAS~p~dg~v~L~Vr~~~~~~~~~Gvc 79 (245)
T cd06200 2 RLQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLG 79 (245)
T ss_pred CCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC--CCCCCCEEEEECCCCCEEEEEEEEEECCCCCCEEE
T ss_conf 4430000598898885589997479999997888877851799--99875446615699997999999974589996664
Q ss_pred CCCCCCCC-CCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHH-HHHHHH
Q ss_conf 53100002-2222100168875335644676881799965868088999999865308863389999405864-543048
Q gi|254780364|r 85 TTYLQNIQ-PGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVA-ELQYGI 162 (224)
Q Consensus 85 s~~l~~~~-~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~-dl~~~~ 162 (224)
|++|++.. .||.+.....+...|.+.+ +..++||||+|||||||+|++++-...+ ....+||||+|+++ |.+|++
T Consensus 80 S~~L~~~~~~Gd~v~~~i~~~~~F~lP~--~~~PvImIg~GTGIAPfrgfl~er~~~~-~~~~wLfFG~R~~~~D~ly~~ 156 (245)
T cd06200 80 SGWLTRHAPIGASVALRLRENPGFHLPD--DGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCRE 156 (245)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHH
T ss_conf 8786347889998999944598675899--9998899956857177899999999726-688389950458745424899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 889988753321012468759998105788776672168785
Q gi|254780364|r 163 DVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 163 el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
|+++|.++-. -.++..+.||+.. .+.+|+|.|.
T Consensus 157 el~~~~~~g~--------l~~l~~AfSRd~~-~k~YVQd~l~ 189 (245)
T cd06200 157 ELEAWQAAGH--------LARLDLAFSRDQA-QKRYVQDRLR 189 (245)
T ss_pred HHHHHHHCCC--------CCEEEEEECCCCC-CCCCHHHHHH
T ss_conf 9999997099--------7467789803699-9873465688
No 50
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.94 E-value=8.2e-26 Score=177.68 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=130.0
Q ss_pred EEEEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC-CCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 898998479986999980789-997389857880314586110556432056677-760179996157676531000022
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD-DKLEFCSIKVDKGFFTTYLQNIQP 93 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~-~~~~~~i~~~~~g~~s~~l~~~~~ 93 (224)
+|++++++|++++.|+|+.|+ ...++||||++|+.+..++ +||+||++...+ +.+.++++.+ |..|.+|.++++
T Consensus 2 kI~~~~~i~~~~~~l~l~ap~~a~~~~PGQFvml~~~~~~e--r~P~Si~~~d~~~g~i~~~~~~v--G~gT~~L~~l~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKGE--RIPLTIADWDPEKGTITIVVQVV--GKSTRELATLEE 77 (248)
T ss_pred EEEEEEEECCCEEEEEEECCCHHHHCCCCCEEEEEECCCCC--EEEEEEEEECCCCCEEEEEEEEE--CCHHHHHHCCCC
T ss_conf 68789992598899999870847508998179999799996--44289888769999999999963--905989961889
Q ss_pred CCCCE-ECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 22210-01688753-35644676881799965868088999999865308863389999405864543048889988753
Q gi|254780364|r 94 GDTIL-LHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 94 gd~~~-~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
||.+. +.+ |.|. |.++ +.+++++||||+|+||++.+++.+...+ .+++++||+|+.+++++.+++.++..
T Consensus 78 Gd~l~~v~G-PlG~~f~~~---~~~~~llVaGGiG~APl~~la~~l~~~g--~~v~~i~G~r~~~~~~~~~~~~~~~~-- 149 (248)
T cd06219 78 GDKIHDVVG-PLGKPSEIE---NYGTVVFVGGGVGIAPIYPIAKALKEAG--NRVITIIGARTKDLVILEDEFRAVSD-- 149 (248)
T ss_pred CCEEEEEEC-CCCCCCCCC---CCCEEEEECCCEECCCHHHHHHHHHHCC--CEEEEEECCCCHHHCCCHHHHHHHCC--
T ss_conf 998837874-688874507---8961999847352253599999999879--95899957999798510989874087--
Q ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 321012468759998105788776672168785
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
+ ++.+.......++|+||+++.
T Consensus 150 ---------~--~~~~tddgs~g~~G~vt~~l~ 171 (248)
T cd06219 150 ---------E--LIITTDDGSYGEKGFVTDPLK 171 (248)
T ss_pred ---------E--EEEECCCCCCCCCCCHHHHHH
T ss_conf ---------6--999857888885140106899
No 51
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.94 E-value=3.6e-26 Score=179.89 Aligned_cols=196 Identities=18% Similarity=0.338 Sum_probs=153.9
Q ss_pred CCCCHHCCCCCE-----EEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEECCCCCC--------------------
Q ss_conf 544322073421-----1789899847998699998078--9997389857880314586--------------------
Q gi|254780364|r 2 CDVSSELAADVY-----CESVISVKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLIVNG-------------------- 54 (224)
Q Consensus 2 ~~~~~~ip~~~~-----~~~V~~~~~~T~~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g-------------------- 54 (224)
.|+..++|++.| +.||++.....-=++.|++..| +..+|+||-|+++..|..-
T Consensus 119 ~dm~levpEe~fgvkkWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~ 198 (410)
T COG2871 119 HDMDLEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFN 198 (410)
T ss_pred CCCEEECHHHHCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHC
T ss_conf 56225242776074531589970775654555412507999836647886699953873303124679846745335523
Q ss_pred ---------CCEEEEEEECCCCCCCCCEEEEEEE----------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf ---------1105564320566777601799961----------576765310000222221001688753356446768
Q gi|254780364|r 55 ---------RPIFRAYSIASPCRDDKLEFCSIKV----------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPG 115 (224)
Q Consensus 55 ---------~~~~R~ySiaS~p~~~~~~~~i~~~----------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~ 115 (224)
+++.|+||+||.|.+..+.-+-+|+ +.|.+|+|++.+++||.+.+. ||+|.|+..+ ..
T Consensus 199 lf~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtis-GPfGEfFaKd--td 275 (410)
T COG2871 199 LFRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTIS-GPFGEFFAKD--TD 275 (410)
T ss_pred HHEEECCCCHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEE-CCCHHHHHCC--CC
T ss_conf 10012145368787766414812347479988852799989999941211047850699747983-6614543126--88
Q ss_pred CCEEEEECCCCHHHHHHHHH-HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--C
Q ss_conf 81799965868088999999-86530886338999940586454304888998875332101246875999810578--8
Q gi|254780364|r 116 NRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--D 192 (224)
Q Consensus 116 ~~lvlIAgGtGiaP~~silr-~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~ 192 (224)
+.+|||+||.|.||++|-+- .+......+++.+-||+|+..+.+|.+++++|++++| ||+|+.++|++ .
T Consensus 276 aemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~p--------NF~wH~aLSdplpE 347 (410)
T COG2871 276 AEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENP--------NFHWHLALSDPLPE 347 (410)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCC
T ss_conf 7369983586767117789999986503652566622007777777877888875389--------81799973688876
Q ss_pred CCCC---CCCHHHHHCCCH
Q ss_conf 7766---721687858606
Q gi|254780364|r 193 YLYK---GRITNHILSGEF 208 (224)
Q Consensus 193 ~~~~---GrIt~~i~~g~l 208 (224)
.+|+ |.|-..+..+.|
T Consensus 348 DnW~g~TgFihnv~~en~L 366 (410)
T COG2871 348 DNWDGYTGFIHNVLYENYL 366 (410)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 6854421289999876353
No 52
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.93 E-value=8.6e-25 Score=171.41 Aligned_cols=176 Identities=16% Similarity=0.257 Sum_probs=131.1
Q ss_pred EEEEECCC-----CEEEEEEECC--CCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC--CCCEEEEEEEC--------
Q ss_conf 89984799-----8699998078--9997389857880314586110556432056677--76017999615--------
Q gi|254780364|r 18 ISVKHYTD-----RLFRFCITRP--KSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD--DKLEFCSIKVD-------- 80 (224)
Q Consensus 18 ~~~~~~T~-----~~~~l~l~~p--~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~--~~~~~~i~~~~-------- 80 (224)
+..+++|+ +++.+.|... ..+.|++||++.+. |. |....|.|||||+|.. +.+.+.+..+.
T Consensus 3 ~~n~~~~~~~~~~~~~h~e~d~~~~~~~~y~~Gd~lgv~-p~-~Pl~pR~YSIsSsp~~~p~~i~l~v~vv~~~~~~g~~ 80 (267)
T cd06182 3 TVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVI-PP-NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRI 80 (267)
T ss_pred CEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEE-CC-CCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCE
T ss_conf 202466589999606999997689987860789989997-89-9998760620378879969799999999988899999
Q ss_pred -CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH----CCCCCEEEEEEECCCH
Q ss_conf -76765310000222221001688753356446768817999658680889999998653----0886338999940586
Q gi|254780364|r 81 -KGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPET----YKKFDEVIITHTCGRV 155 (224)
Q Consensus 81 -~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~----~~~~~~i~l~~g~R~~ 155 (224)
.|-+|+||.++.+|+.+.+...++..|.+... +..++||||.|||||||+|++++... ....++++||||+|++
T Consensus 81 ~~GvcS~yL~~l~~g~~v~~~i~~~~~F~lP~~-~~~PiImIg~GTGiAPfr~flq~r~~~~~~~~~~g~~~LffGcR~~ 159 (267)
T cd06182 81 RKGVCSNFLAGLQLGAKVTVFIRPAPSFRLPKD-PTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNF 159 (267)
T ss_pred EEEEEHHHHCCCCCCCEEEEEECCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 205401355169997989999716986789888-8998899947866067899999999987436676767999715886
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf -4543048889988753321012468759998105788776672168785
Q gi|254780364|r 156 -AELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 156 -~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
.|.+|++||+++.++- ...++..+.||+....+-+|++.|.
T Consensus 160 ~~D~lY~~El~~~~~~g--------~l~~l~~AfSRd~~~~k~YVQd~i~ 201 (267)
T cd06182 160 ASDYLYREELQEALKDG--------ALTRLDVAFSREQAEPKVYVQDKLK 201 (267)
T ss_pred CCCCHHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 54406999999998679--------9746989963578777500668999
No 53
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=1.5e-24 Score=169.93 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=112.6
Q ss_pred EEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCC---C-------------CCEEEEEEECCCCCC----CCCEE
Q ss_conf 89984799869999807899---9738985788031458---6-------------110556432056677----76017
Q gi|254780364|r 18 ISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVN---G-------------RPIFRAYSIASPCRD----DKLEF 74 (224)
Q Consensus 18 ~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~---g-------------~~~~R~ySiaS~p~~----~~~~~ 74 (224)
++++.+|++|.+|+|...++ ..|+||||+.|.++.. | ....|.|||+|+|.. +++++
T Consensus 1 ~kke~ltp~i~~F~f~~~d~~~~~~~~pGQ~itl~~~~~l~~gy~hm~d~~P~slndd~vRtyTiSS~P~~~~~~~~~~I 80 (220)
T cd06197 1 IKSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEI 80 (220)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEE
T ss_conf 96431588701699980897656678996579997665567661440479986456773489886238999887767999
Q ss_pred EEEEECCCCCCCCCCCC-CCC---CCCEECCCCCCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 99961576765310000-222---221001688753356446--76881799965868088999999865308-863389
Q gi|254780364|r 75 CSIKVDKGFFTTYLQNI-QPG---DTILLHKKSTGDLILDSL--IPGNRLYLFSMGTGIAPFASMIRDPETYK-KFDEVI 147 (224)
Q Consensus 75 ~i~~~~~g~~s~~l~~~-~~g---d~~~~~~~p~g~f~~~~~--~~~~~lvlIAgGtGiaP~~silr~~~~~~-~~~~i~ 147 (224)
.+++ .|.+|++||+. ..+ +..+...||+|.|.+++. ...++++|||||+|||||+||++.++..+ ...+++
T Consensus 81 tvk~--~G~vS~~Lh~~~~~g~~~g~~~p~~G~~G~F~l~~~~~~~~~~~~~~~~g~gitp~~~~~~~~~~~~~~~~~v~ 158 (220)
T cd06197 81 TVRK--KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDIT 158 (220)
T ss_pred EEEE--CCCCCHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 9987--88436889875652577643777553776657236777767734898246666608999999874557787689
Q ss_pred EEEECCCHHHHHHHHHHHHHH
Q ss_conf 999405864543048889988
Q gi|254780364|r 148 ITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 148 l~~g~R~~~dl~~~~el~~l~ 168 (224)
|+|++|..++.+..+++.+..
T Consensus 159 l~~s~r~~d~~~~~d~l~~~p 179 (220)
T cd06197 159 LLWSLREDDLPLVMDTLVRFP 179 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCC
T ss_conf 999356410467999874364
No 54
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=169.92 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCC-CCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 342117898998479986999980789997389857880314586-1105564320566777601799961576765310
Q gi|254780364|r 10 ADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNG-RPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYL 88 (224)
Q Consensus 10 ~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g-~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l 88 (224)
..-|..+|+..++.+.+++.++..-..++.|+||||+.|.++..+ +...+|||||++....++.|.|+.. |..|..+
T Consensus 213 s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~sel~FsIK~L--GD~Tk~l 290 (438)
T COG4097 213 SFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGSELRFSIKAL--GDFTKTL 290 (438)
T ss_pred CCCCCEEEECHHHCCCCHHEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEEEHHH--HHHHHHH
T ss_conf 65665477424326842410332247864136774589984344566889982353078886699970331--0166788
Q ss_pred CC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 00-02222210016887533564467688179996586808899999986530886338999940586454304888998
Q gi|254780364|r 89 QN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE 167 (224)
Q Consensus 89 ~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l 167 (224)
++ +++|+.+.+ .||+|.|..++-.+ +.|+||||+|||||+||++++..++...+++|+|++|+.++..|.+||+++
T Consensus 291 ~dnLk~G~k~~v-dGPYG~F~~~~g~~--~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~ 367 (438)
T COG4097 291 KDNLKVGTKLEV-DGPYGKFDFERGLN--TQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRAL 367 (438)
T ss_pred HHHCCCCCEEEE-ECCCCEEECCCCCC--CCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 873568865888-56853156114774--527983476750699999862422358966999983588416899999999
Q ss_pred HHHHH
Q ss_conf 87533
Q gi|254780364|r 168 ISQDE 172 (224)
Q Consensus 168 ~~~~~ 172 (224)
+++.|
T Consensus 368 ~qkl~ 372 (438)
T COG4097 368 AQKLP 372 (438)
T ss_pred HHCCC
T ss_conf 72289
No 55
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.91 E-value=1.9e-23 Score=163.16 Aligned_cols=145 Identities=22% Similarity=0.297 Sum_probs=108.6
Q ss_pred EEECC-CCEEEEEEECCCCCCCCCCCEEEECCCCC-CCCEEEEEEECCCCCC--CCCEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 98479-98699998078999738985788031458-6110556432056677--76017999615767653100-00222
Q gi|254780364|r 20 VKHYT-DRLFRFCITRPKSFRFRSGEFVMLGLIVN-GRPIFRAYSIASPCRD--DKLEFCSIKVDKGFFTTYLQ-NIQPG 94 (224)
Q Consensus 20 ~~~~T-~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~-g~~~~R~ySiaS~p~~--~~~~~~i~~~~~g~~s~~l~-~~~~g 94 (224)
++.+. +++.++++..+..+.|+||||+.|.+|.. +...++||||+|+|.+ +.+.++| |..+|. ++.+. +...+
T Consensus 4 ~~~~~~~~~~~l~i~~~~~~~~~pGq~v~l~~p~~~~~~~~HPFTias~p~~~~~~l~~~I-r~~~G~-t~~l~~~~~~~ 81 (210)
T cd06186 4 VELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII-RAKKGF-TTRLLRKALKS 81 (210)
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEE-EECCCC-HHHHHHHHHHC
T ss_conf 9987999979999967998977899769999888897311377066506778997699999-957982-55899998617
Q ss_pred ----CC-CEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC----CCCCEEEEEEECCCHHHH-HHHHHH
Q ss_conf ----22-10016887533564467688179996586808899999986530----886338999940586454-304888
Q gi|254780364|r 95 ----DT-ILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETY----KKFDEVIITHTCGRVAEL-QYGIDV 164 (224)
Q Consensus 95 ----d~-~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~----~~~~~i~l~~g~R~~~dl-~~~~el 164 (224)
.. .+.+.||+|.+.... ...++++|||||+||||++||++++... ...++|.|+|++|+.+++ .|.++|
T Consensus 82 ~~~~~~~~v~veGPyG~~~~~~-~~~~~vlliaGG~GItp~ls~l~~l~~~~~~~~~~~~i~lvw~~R~~~~~~~~~~~l 160 (210)
T cd06186 82 PGGGVSLKVLVEGPYGSSSEDL-LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDEL 160 (210)
T ss_pred CCCCCCEEEEEECCCCCCCCCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf 7877744999987999986562-117818999137570368999999986002468884199999979999999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780364|r 165 MHE 167 (224)
Q Consensus 165 ~~l 167 (224)
...
T Consensus 161 ~~~ 163 (210)
T cd06186 161 RAA 163 (210)
T ss_pred HHH
T ss_conf 876
No 56
>TIGR02911 sulfite_red_B sulfite reductase, subunit B; InterPro: IPR014260 This entry represents subunit B, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=99.91 E-value=1.5e-23 Score=163.86 Aligned_cols=176 Identities=16% Similarity=0.240 Sum_probs=143.0
Q ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 17898998479986999980789997389857880314586110556432056677760179996157676531000022
Q gi|254780364|r 14 CESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQP 93 (224)
Q Consensus 14 ~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~ 93 (224)
..+|.++.++|+=-|+||+.-+ ++-+||||+.+++|-.||. |-|++ .-.++.+-+.|+++ |.+|+.++....
T Consensus 7 ~~~Il~i~~HT~iey~FR~~~~--g~vkpGQF~EVSlPk~GEa---PISV~-~~Ge~~~DL~IR~V--G~VT~~~f~~~~ 78 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GEVKPGQFFEVSLPKYGEA---PISVS-GIGEGYIDLTIRRV--GKVTDEVFTLKE 78 (261)
T ss_pred CHHEEEEECCCCCCEEEEEEEE--EEECCCCEEEEECCCCCCC---CEEEE-CCCCCEEEEEEECC--CCEEHHHEEECC
T ss_conf 0100010036887425778874--2215766699823875888---51541-36886588987213--401111200037
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 222100168875335644676881799965868088999999865-3088633899994058645430488899887533
Q gi|254780364|r 94 GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPE-TYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 94 gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~-~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
||.+.++++.+..|..+.. ..+.++.+|||||+||+++++++.. +.+.-..+.|+.|-++.++++|++++++|..++
T Consensus 79 G~~~flRGpYGNGf~vd~y-k~Kel~vvAGGTGvaPVkG~~~yF~~N~~e~k~l~~i~GfK~~~~iLfk~d~~~W~~~~- 156 (261)
T TIGR02911 79 GDKLFLRGPYGNGFDVDNY-KDKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWKENI- 156 (261)
T ss_pred CCEEEEECCCCCCCCHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCC-
T ss_conf 9726986488898552330-68617998279776603477777530601103477997225711100077899887226-
Q ss_pred HHCCCCCCCEEEEEEECCC--CCC-CCCCCHHHHHCCCHH
Q ss_conf 2101246875999810578--877-667216878586069
Q gi|254780364|r 173 ILKDLIGQKLKFYRTVTQE--DYL-YKGRITNHILSGEFY 209 (224)
Q Consensus 173 ~~~~~~~~~~~~~~~isre--~~~-~~GrIt~~i~~g~l~ 209 (224)
| ++-|+... ++. ..|+||+.|.+=+|.
T Consensus 157 --------n--~~lT~D~ae~d~~~~~G~vT~~~~~l~l~ 186 (261)
T TIGR02911 157 --------N--LVLTLDEAEEDYKGNIGLVTKYIPELKLK 186 (261)
T ss_pred --------C--EEEEEECCCCCCCCCEEEEECCCCCCCCC
T ss_conf --------7--79998336777653330102000235412
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=3.4e-22 Score=155.49 Aligned_cols=168 Identities=17% Similarity=0.232 Sum_probs=130.2
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 8989984799869999807899-973898578803145861105564320566777601799961576765310000222
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPG 94 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~g 94 (224)
+|++++.+++++|.|.+++|.- -..+||||+.|++...|+ ++|+||+....++....++.++. |..|..|..++.|
T Consensus 3 kIl~k~~La~~v~~~~i~AP~IA~~akPGQFVivr~~e~gE--RiPltIad~D~e~gtitiv~q~v-G~sT~~L~~l~~G 79 (760)
T PRK12778 3 KIISKEHFSEKVFKLVIEAPLIAKSRKAGHFVIVRVGEKGE--RMPLTIAGADPKKGTITLVVQEV-GLSSTRLCELNEG 79 (760)
T ss_pred HHHHHHCCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCC--CCCEEEEEEECCCCEEEEEEEEE-CHHHHHHHCCCCC
T ss_conf 32100314776089999886888458999769998589985--33206564607899799999996-8569999627899
Q ss_pred CCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 221001688753-3564467688179996586808899999986530886338999940586454304888998875332
Q gi|254780364|r 95 DTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEI 173 (224)
Q Consensus 95 d~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~ 173 (224)
|.+.-+-||.|. |.+. ...+++||+||+|+||++.+++.+...+ .++..++|+|+.+.+++.+|++++..
T Consensus 80 d~i~dvvGPLG~p~~i~---~~g~vv~VgGGvG~Ap~~piakalk~~G--n~v~~I~Gar~k~~vilede~~~~~d---- 150 (760)
T PRK12778 80 DYITDVVGPLGQATHIE---NFGTVVCAGGGVGVAPMLPIVQALKAAG--NRVITVLAGRSKELIILEKEMRESSD---- 150 (760)
T ss_pred CEEEEEECCCCCCCCCC---CCCEEEEEECCEEHHHHHHHHHHHHHCC--CEEEEEEECCCHHHEEHHHHHHHHCC----
T ss_conf 87725565799980567---7873999958696898799999999869--95999984266334035999997438----
Q ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1012468759998105788776672168785
Q gi|254780364|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 174 ~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
+ ++.+...-.++.+|+||+.|+
T Consensus 151 -------~--~~itTDDGS~G~kG~VT~~L~ 172 (760)
T PRK12778 151 -------E--VIIMTDDGSYGRKGLVTEGVE 172 (760)
T ss_pred -------E--EEEECCCCCCCCCCEECHHHH
T ss_conf -------6--999858999972745667799
No 58
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.88 E-value=6e-21 Score=147.89 Aligned_cols=138 Identities=18% Similarity=0.285 Sum_probs=101.4
Q ss_pred EEEEEEECCCCC--CCCCEEEEE--EE--------CCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCCCCCEEEEEC
Q ss_conf 055643205667--776017999--61--------576765310000222221001688-75335644676881799965
Q gi|254780364|r 57 IFRAYSIASPCR--DDKLEFCSI--KV--------DKGFFTTYLQNIQPGDTILLHKKS-TGDLILDSLIPGNRLYLFSM 123 (224)
Q Consensus 57 ~~R~ySiaS~p~--~~~~~~~i~--~~--------~~g~~s~~l~~~~~gd~~~~~~~p-~g~f~~~~~~~~~~lvlIAg 123 (224)
..|.|||||+|. .+.+.+.+. +. ..|-+|+||.++.+|+.+.+.-.+ .+.|.+... +..++||||.
T Consensus 160 ~PR~YSIaSSp~~~p~~v~ltv~vv~~~t~~~~~r~~GlcS~~L~~l~~g~~v~~~i~~~~~~F~lP~d-~~~PiImIgp 238 (384)
T cd06206 160 RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAFRPPSD-PSTPLIMIAA 238 (384)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEECCEEHHHHHHCCCCCEEEEEEECCCCCCCCCCC-CCCCEEEEEC
T ss_conf 884120116865799968999999996516898114133258787068988799999758987679999-9998899935
Q ss_pred CCCHHHHHHHHHHH----HHCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 86808899999986----5308863389999405864-543048889988753321012468759998105788776672
Q gi|254780364|r 124 GTGIAPFASMIRDP----ETYKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGR 198 (224)
Q Consensus 124 GtGiaP~~silr~~----~~~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~Gr 198 (224)
|||||||+|++++- ......++++||||+|+++ |.+|++|+++|.++- .+....+.||++.....+
T Consensus 239 GTGIAPfr~flqeR~~~~~~~~~~g~~~LffGcR~~~~D~ly~~E~~~~~~~g---------~l~l~~AFSRd~~~k~~Y 309 (384)
T cd06206 239 GTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAG---------VVSVRRAYSRPPGGGCRY 309 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC---------CEEEEEEEECCCCCCCCC
T ss_conf 86707789999999999863867687699941578552267899999998679---------859999995589999975
Q ss_pred CHHHHH
Q ss_conf 168785
Q gi|254780364|r 199 ITNHIL 204 (224)
Q Consensus 199 It~~i~ 204 (224)
|++.|.
T Consensus 310 VQd~i~ 315 (384)
T cd06206 310 VQDRLW 315 (384)
T ss_pred HHHHHH
T ss_conf 799999
No 59
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.86 E-value=2.8e-21 Score=149.88 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=143.0
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 21178989984799869999807899-97389857880314586110556432056677760179996157676531000
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQN 90 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~ 90 (224)
..+.||++++++++.++.|.+++|.- -..+||||+.|++...||.+ |.+||....+++....|.... |+.|..|..
T Consensus 648 ~~~~kIl~k~~La~~i~ef~V~AP~VAkkakPGQFVIvr~dEkGERI--PLTIaD~D~EkGtItiV~Q~v-GkST~~L~~ 724 (944)
T PRK12779 648 QIPQTIVGKVPLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKGELI--PLTLADWDAEKGTIDLVVQGM-GTSSLEINR 724 (944)
T ss_pred CCHHHHHHHHHCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCCCC--CCCCCCCCCCCCEEEEEEEEC-CHHHHHHHC
T ss_conf 26487875551457459999978577602699987999858998736--864134556789799999963-876999863
Q ss_pred CCCCCCCEECCCCCCCCCCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 0222221001688753356446-768817999658680889999998653088633899994058645430488899887
Q gi|254780364|r 91 IQPGDTILLHKKSTGDLILDSL-IPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 91 ~~~gd~~~~~~~p~g~f~~~~~-~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
++.||.+.-+.||.|.-.--+. ....++++||||+|+||++.+++.+...+ .+++.+.|+|+.+-+++.+|++..++
T Consensus 725 l~~GD~i~D~vGPLG~Psei~~~~~~~~Vv~vgGGvGiA~vyPiaKalke~G--N~V~~IiGaR~kdllilede~~~vs~ 802 (944)
T PRK12779 725 MAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFWTGDDERVGK 802 (944)
T ss_pred CCCCCEEEECCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEHHHHHHHH
T ss_conf 6899876322578999722235067874999915112414469999999859--93699972356112775004566666
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 53321012468759998105788776672168785
Q gi|254780364|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
-. ..+.+.+..+.+.....++.+|.+|+.|+
T Consensus 803 l~----~e~~d~l~viitTDDGS~G~KG~VTd~Lk 833 (944)
T PRK12779 803 LK----AEFGDQLSVIYTTNDGSFGVKGFVTGPLE 833 (944)
T ss_pred HH----HHHCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 66----65235342799768999874561308999
No 60
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.83 E-value=1.2e-19 Score=139.90 Aligned_cols=138 Identities=20% Similarity=0.306 Sum_probs=103.4
Q ss_pred EEEEEEECCCCCC--CCCEEEEEEE--------CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 0556432056677--7601799961--------57676531000-02222210016887533564467688179996586
Q gi|254780364|r 57 IFRAYSIASPCRD--DKLEFCSIKV--------DKGFFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGT 125 (224)
Q Consensus 57 ~~R~ySiaS~p~~--~~~~~~i~~~--------~~g~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGt 125 (224)
..|.|||||+|.. +.+.+.+..+ -.|-+|+||.+ +..|+.+.+.-.++..|.+... +..++||||.||
T Consensus 145 ~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GlcS~~L~~~l~~g~~v~~~i~~~~~F~lP~~-~~~PiImIg~GT 223 (360)
T cd06199 145 QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPHFRLPED-PDAPIIMVGPGT 223 (360)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCC-CCCCEEEEECCC
T ss_conf 8830011258657998699999998875799735875208887217799988999954898899989-999869983685
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 80889999998653088633899994058-64543048889988753321012468759998105788776672168785
Q gi|254780364|r 126 GIAPFASMIRDPETYKKFDEVIITHTCGR-VAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 126 GiaP~~silr~~~~~~~~~~i~l~~g~R~-~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
|||||+|++++-...+..++.+||||||+ ..|.+|++|+++|.++-- -.+++.+.||+.. .+-+|++.|.
T Consensus 224 GiAPfR~FlqeR~~~~~~G~~~LffGCR~~~~D~lY~~El~~~~~~g~--------l~~l~~AFSRd~~-~k~YVQd~l~ 294 (360)
T cd06199 224 GIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGV--------LTRLDTAFSRDQA-EKVYVQDRMR 294 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC--------CEEEEEEEECCCC-CCCCHHHHHH
T ss_conf 608789999999982588987999605783232358999999997498--------3489999945888-8886789999
No 61
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=139.71 Aligned_cols=169 Identities=17% Similarity=0.182 Sum_probs=133.3
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCC-CCCC
Q ss_conf 8989984799869999807899-9738985788031458611055643205667776017999615767653100-0022
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQ-NIQP 93 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~-~~~~ 93 (224)
||++++.+++++|.|.+++|.- -..+||||+.|++...||.+ |+||+....+++...+|.+.. |..|..|. .++.
T Consensus 3 KIl~K~~Ls~~v~l~eVeAP~IAk~akpGQFVIvr~~E~GERI--PLTIad~D~ekGtItiV~q~v-GksT~~L~~~l~~ 79 (993)
T PRK12775 3 SIVRREQFSDTTFLWDVEAPDIAASAEPGHFVMLRLYDGAERI--PLTVADFDRKKGLVTMVVQAL-GKTTREMRDKFKA 79 (993)
T ss_pred CHHHHHHCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCCCC--CCCHHCCCCCCCEEEEEEEEC-CHHHHHHHHHCCC
T ss_conf 0232343576338999977687835789987999838998746--765300466788799999964-8729999962258
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 22210016887533564467688179996586808899999986530886338999940586454304888998875332
Q gi|254780364|r 94 GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEI 173 (224)
Q Consensus 94 gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~ 173 (224)
||.+.-+-||.|.-. +.....++++|+||+|+||++.++|.+...+ .+++.+.|+|+.+-+++.+|+.+.+.
T Consensus 80 GD~i~DivGPLG~Ps--~Ie~~G~Vv~VgGGvGiApv~PiakaLke~G--N~V~~IiGaR~kdlvilede~~~~sd---- 151 (993)
T PRK12775 80 GDTFEDFVGPLGLPQ--HIDKAGHVVFVGGGLGVAPIFPQLRAFKEAG--ARTTAIMGFRNKDLVFWEDKFREYAD---- 151 (993)
T ss_pred CCEEEECCCCCCCCC--CCCCCCEEEEEECCEEHHHHHHHHHHHHHCC--CEEEEEEECCCCCCEEHHHHHHHHCC----
T ss_conf 987733266799964--1025773999908774302389999999859--90899984266002334999986468----
Q ss_pred HCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 1012468759998105788776672168785
Q gi|254780364|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 174 ~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
++ +.+...-.++.+|.+|+.|+
T Consensus 152 -------el--~i~TDDGS~G~kG~VTd~L~ 173 (993)
T PRK12775 152 -------DL--IICTDDGSYGEPGFVTAALK 173 (993)
T ss_pred -------CE--EEECCCCCCCCCCEEHHHHH
T ss_conf -------38--99768999875642069999
No 62
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1e-19 Score=140.35 Aligned_cols=202 Identities=16% Similarity=0.232 Sum_probs=146.4
Q ss_pred CCCCEEEEEEEEEECCCC-----EEEEEEECCC-CCCCCCCCEEEECCCCCC----------------------------
Q ss_conf 734211789899847998-----6999980789-997389857880314586----------------------------
Q gi|254780364|r 9 AADVYCESVISVKHYTDR-----LFRFCITRPK-SFRFRSGEFVMLGLIVNG---------------------------- 54 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~-----~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g---------------------------- 54 (224)
+.+-+.+++...+.+|.. ++.+.+..++ +..|+||+.+.|.-..+.
T Consensus 218 ~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~~~~~~~~ 297 (587)
T COG0369 218 KPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGETLPLV 297 (587)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEECCCCEEEECCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHH
T ss_conf 66761037612567886566761689985066546403799755776789989999999973999666002478751499
Q ss_pred ------------------------------------------------------------------------CCEEEEEE
Q ss_conf ------------------------------------------------------------------------11055643
Q gi|254780364|r 55 ------------------------------------------------------------------------RPIFRAYS 62 (224)
Q Consensus 55 ------------------------------------------------------------------------~~~~R~yS 62 (224)
....|-||
T Consensus 298 ~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~YS 377 (587)
T COG0369 298 EALKSHFEFTSAPKSLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRLYS 377 (587)
T ss_pred HHHHHHEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 99877220334268899999876388778999875205778766404519999864565678999999747667870356
Q ss_pred ECCCCCCCC--CEEE--EEEEC------CCCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 205667776--0179--99615------7676531000022-22210016887533564467688179996586808899
Q gi|254780364|r 63 IASPCRDDK--LEFC--SIKVD------KGFFTTYLQNIQP-GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFA 131 (224)
Q Consensus 63 iaS~p~~~~--~~~~--i~~~~------~g~~s~~l~~~~~-gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~ 131 (224)
|+|+|.... ..++ +++.. .|.+|++|.+... ||.+-+...+...|.+...+. +++|||+.|||||||+
T Consensus 378 IsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~-~PiIMIG~GTGIAPFR 456 (587)
T COG0369 378 IASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPE-TPIIMIGPGTGIAPFR 456 (587)
T ss_pred ECCCCCCCCCEEEEEEEEEEECCCCCCEEEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC-CCEEEECCCCCCHHHH
T ss_conf 516888889857999999971058885300026889864127983799953687510689999-8669986897725389
Q ss_pred HHHHHHHHCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHH--------
Q ss_conf 99998653088633899994058-645430488899887533210124687599981057887766721687--------
Q gi|254780364|r 132 SMIRDPETYKKFDEVIITHTCGR-VAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNH-------- 202 (224)
Q Consensus 132 silr~~~~~~~~~~i~l~~g~R~-~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~-------- 202 (224)
++++.....+..++++||||+|+ ..|.+|++|++++.++- .+++.....||+.. .+-+|++.
T Consensus 457 afvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G--------~~~~l~~AfSRdq~-~KiYVQd~lre~~del 527 (587)
T COG0369 457 AFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDG--------VLTRLDLAFSRDQE-EKIYVQDRLREQADEL 527 (587)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC--------CCEEEEEEEEECCC-CCCCHHHHHHHHHHHH
T ss_conf 99999986466575489965888863432599999997448--------70577889960578-8761887998738999
Q ss_pred ---HHCCCHHHHCC-CCCCCHH
Q ss_conf ---85860699678-7978712
Q gi|254780364|r 203 ---ILSGEFYRNMG-LSPLNPD 220 (224)
Q Consensus 203 ---i~~g~l~~~~~-l~~~~pe 220 (224)
|++|-.+..|| ...|.+|
T Consensus 528 ~~~l~~ga~~YVCGd~~~Ma~d 549 (587)
T COG0369 528 WEWLEEGAHIYVCGDAKGMAKD 549 (587)
T ss_pred HHHHHCCCEEEEECCCCCCHHH
T ss_conf 9999779889996887555077
No 63
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.82 E-value=2.5e-19 Score=138.03 Aligned_cols=141 Identities=19% Similarity=0.283 Sum_probs=101.0
Q ss_pred CEEEEEEECCCCCCC--CCEEEEEEE---CCCCCCCCCCCC-----CCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 105564320566777--601799961---576765310000-----2222210016887533564467688179996586
Q gi|254780364|r 56 PIFRAYSIASPCRDD--KLEFCSIKV---DKGFFTTYLQNI-----QPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGT 125 (224)
Q Consensus 56 ~~~R~ySiaS~p~~~--~~~~~i~~~---~~g~~s~~l~~~-----~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGt 125 (224)
...|.|||||+|... .+.+.+..+ ..|.+|++|..+ ..|+.+.+...+.+.|.+....+..++||||.||
T Consensus 172 l~PR~YSISSSp~~~p~~v~ltv~vv~~~~~GlcS~~L~~l~~~~~~~g~~v~~~i~~~~~F~lP~~~~~~PiImIg~GT 251 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGT 251 (398)
T ss_pred CCCCCCEECCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 67744200367456998799999999718997233577751423357998799998658876789656789779981686
Q ss_pred CHHHHHHHHHHHHH------CCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC--CCC
Q ss_conf 80889999998653------08863389999405864-5430488899887533210124687599981057887--766
Q gi|254780364|r 126 GIAPFASMIRDPET------YKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY--LYK 196 (224)
Q Consensus 126 GiaP~~silr~~~~------~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~--~~~ 196 (224)
|||||+|++++-+. .+..++++||||+|+++ |.+|++|+++|.++-- -.+++...||+.. ..+
T Consensus 252 GIAPfRaFlqeR~~~~~~~~~~~~g~~~LffGcR~~~~D~lY~dEl~~~~~~G~--------l~~l~~AFSRd~~~~~~k 323 (398)
T cd06203 252 GVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGI--------LTRLIVAFSRDENDGSTP 323 (398)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC--------CCEEEEEEECCCCCCCCC
T ss_conf 624379999999998762125787875899715772202258999999997499--------724689996678878998
Q ss_pred CCCHHHHH
Q ss_conf 72168785
Q gi|254780364|r 197 GRITNHIL 204 (224)
Q Consensus 197 GrIt~~i~ 204 (224)
-+|+++|.
T Consensus 324 ~YVQd~i~ 331 (398)
T cd06203 324 KYVQDKLE 331 (398)
T ss_pred CCHHHHHH
T ss_conf 53478999
No 64
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.82 E-value=2.6e-19 Score=137.92 Aligned_cols=139 Identities=23% Similarity=0.353 Sum_probs=101.0
Q ss_pred CEEEEEEECCCCCC--CCCEEEE--EEE---------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 10556432056677--7601799--961---------5767653100002222210016887533564467688179996
Q gi|254780364|r 56 PIFRAYSIASPCRD--DKLEFCS--IKV---------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFS 122 (224)
Q Consensus 56 ~~~R~ySiaS~p~~--~~~~~~i--~~~---------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIA 122 (224)
...|.|||||+|.. +.+.+.+ ++. ..|-+|+||....+|+.+.+.-.+...|.+.+. +..++||||
T Consensus 175 l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~~~~r~GlcS~~L~~l~~g~~v~~~vr~~~~F~lP~d-~~~PiImIg 253 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPED-PSVPVIMVG 253 (406)
T ss_pred CCCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEECCCCCCCCCC-CCCCEEEEE
T ss_conf 6860267516866799879999999986647888745530110777558997989999947987889888-999879980
Q ss_pred CCCCHHHHHHHHHHHH--------HCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCC
Q ss_conf 5868088999999865--------308863389999405864-54304888998875332101246875-9998105788
Q gi|254780364|r 123 MGTGIAPFASMIRDPE--------TYKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQED 192 (224)
Q Consensus 123 gGtGiaP~~silr~~~--------~~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~-~~~~~isre~ 192 (224)
.|||||||+|++++-. .....++++||||+|+++ |.+|++|++++.++- -+ ++....||++
T Consensus 254 ~GTGiAPFR~FlqeR~~~~~~~~~~~~~~G~~~LffGcR~~~~D~ly~~El~~~~~~g---------~l~~l~~AfSRd~ 324 (406)
T cd06202 254 PGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG---------VLTEVYTALSREP 324 (406)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC---------CCCEEEEEEECCC
T ss_conf 7877177899999999988755421688787599960787532255899999998759---------8505899875479
Q ss_pred CCCCCCCHHHHH
Q ss_conf 776672168785
Q gi|254780364|r 193 YLYKGRITNHIL 204 (224)
Q Consensus 193 ~~~~GrIt~~i~ 204 (224)
...+-+|+++|.
T Consensus 325 ~~~k~YVQd~i~ 336 (406)
T cd06202 325 GKPKTYVQDLLK 336 (406)
T ss_pred CCCCCCHHHHHH
T ss_conf 989874689999
No 65
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.81 E-value=2.9e-19 Score=137.57 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=101.0
Q ss_pred EEEEEEECCCCCCC--CCEEEEEEE---------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 05564320566777--601799961---------5767653100002222210016887533564467688179996586
Q gi|254780364|r 57 IFRAYSIASPCRDD--KLEFCSIKV---------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGT 125 (224)
Q Consensus 57 ~~R~ySiaS~p~~~--~~~~~i~~~---------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGt 125 (224)
..|.|||||+|... .+.+.+..+ ..|-+|+||.++..|+.+.+.-.|+ .|.+... +..++||||.||
T Consensus 163 ~PR~YSIsSSp~~~~~~i~ltv~~v~~~t~~~~~r~GlcS~~L~~l~~g~~v~~~i~~s-~F~lP~d-~~~PiImIg~GT 240 (382)
T cd06207 163 KPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKS-SFKLPKD-PKKPIIMVGPGT 240 (382)
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEEEECCCCCCEEECCHHHHHHHCCCCCEEEEEEECC-CCCCCCC-CCCCEEEEECCC
T ss_conf 76223412464569986899999987107999864050537887189999799998578-8779999-999858995697
Q ss_pred CHHHHHHHHHHHH----HCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf 8088999999865----308863389999405864-54304888998875332101246875999810578877667216
Q gi|254780364|r 126 GIAPFASMIRDPE----TYKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRIT 200 (224)
Q Consensus 126 GiaP~~silr~~~----~~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt 200 (224)
|||||+|++++-. .....++++||||+|+++ |.+|++|+++|.++- .-.+++.+.||+... +-+|+
T Consensus 241 GIAPfr~flqeR~~~~~~~~~~g~~~LffGcR~~~~D~lY~dEl~~~~~~g--------~l~~l~~AfSRd~~~-k~YVQ 311 (382)
T cd06207 241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSG--------VLTTLGTAFSRDQPK-KVYVQ 311 (382)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCC--------CCCEEEEEEECCCCC-CCCHH
T ss_conf 716689999999999852867787699951568655652799999999749--------873599998058999-87378
Q ss_pred HHHHC
Q ss_conf 87858
Q gi|254780364|r 201 NHILS 205 (224)
Q Consensus 201 ~~i~~ 205 (224)
++|.+
T Consensus 312 d~l~~ 316 (382)
T cd06207 312 DLIRE 316 (382)
T ss_pred HHHHH
T ss_conf 89997
No 66
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.81 E-value=4.6e-19 Score=136.35 Aligned_cols=137 Identities=14% Similarity=0.230 Sum_probs=102.3
Q ss_pred EEEEEECCCCCCC--CCEEE--EEEE------CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 5564320566777--60179--9961------57676531000-022222100168875335644676881799965868
Q gi|254780364|r 58 FRAYSIASPCRDD--KLEFC--SIKV------DKGFFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTG 126 (224)
Q Consensus 58 ~R~ySiaS~p~~~--~~~~~--i~~~------~~g~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtG 126 (224)
.|.|||||+|... ++.+. +++. ..|.+|+||.+ +..|+.+-+.-.+...|.+... +..++||||.|||
T Consensus 385 PR~YSIsSS~~~~p~~vhltv~vV~y~~~g~~r~G~cS~yLa~~l~~g~~v~v~i~~~~~FrLP~d-~~~PiIMIGpGTG 463 (599)
T PRK10953 385 PRLYSIASSQAEVENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN-PETPVIMIGPGTG 463 (599)
T ss_pred CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCC-CCCCEEEECCCCC
T ss_conf 741012257777898379999999976279755786471566447999878999952898789989-9997699717866
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 08899999986530886338999940586-4543048889988753321012468759998105788776672168785
Q gi|254780364|r 127 IAPFASMIRDPETYKKFDEVIITHTCGRV-AELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 127 iaP~~silr~~~~~~~~~~i~l~~g~R~~-~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
||||+|++++-...+..++.+||||+|+. .|.+|++|+++|.++-- -.++....||+.. .+-+|++.|.
T Consensus 464 IAPFRsFlqeR~~~~~~G~~~LfFGcR~~~~DflY~~E~~~~~~~G~--------L~~l~~AFSRDq~-~K~YVQd~l~ 533 (599)
T PRK10953 464 IAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV--------LTRIDLAWSRDQK-EKIYVQDKLR 533 (599)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC--------CCCEEEEECCCCC-CCCCHHHHHH
T ss_conf 16679999998853577987999658898743428999999997798--------6414679776799-9871788999
No 67
>pfam00970 FAD_binding_6 Oxidoreductase FAD-binding domain.
Probab=99.76 E-value=2.6e-18 Score=131.74 Aligned_cols=95 Identities=25% Similarity=0.404 Sum_probs=82.9
Q ss_pred EEEEEEEEECCCCEEEEEEECCC---CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCCCCCC
Q ss_conf 17898998479986999980789---9973898578803145861105564320566777-6017999615767653100
Q gi|254780364|r 14 CESVISVKHYTDRLFRFCITRPK---SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFTTYLQ 89 (224)
Q Consensus 14 ~~~V~~~~~~T~~~~~l~l~~p~---~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s~~l~ 89 (224)
++||++++++|+|+++|+|+.|+ .+.|.||||+.|.++..|+..+|+||++|.|.++ .+++.|+++++|.+|++|+
T Consensus 1 p~kv~~~~~lt~dv~~~~f~~~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~YS~~s~p~~~~~~e~~Vk~~~~G~~S~~l~ 80 (99)
T pfam00970 1 PAKLVEKESLSHDTRRFRFALPSPDQVLGLPPGQHIFLRLPIDGKLVVRAYSPASSPDDVGELELLVKVYPGGKMSQYLD 80 (99)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 94999999858995999999799864348899609999976599899877221566578985999999970796677875
Q ss_pred CCCCCCCCEECCCCCCCCCC
Q ss_conf 00222221001688753356
Q gi|254780364|r 90 NIQPGDTILLHKKSTGDLIL 109 (224)
Q Consensus 90 ~~~~gd~~~~~~~p~g~f~~ 109 (224)
++++||.+.+ .+|.|.|.+
T Consensus 81 ~l~~Gd~v~i-~gP~G~F~~ 99 (99)
T pfam00970 81 SLKVGDTVEV-KGPLGHFEY 99 (99)
T ss_pred CCCCCCEEEE-ECCCEEEEC
T ss_conf 2899999999-843586679
No 68
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.75 E-value=8.8e-18 Score=128.50 Aligned_cols=137 Identities=20% Similarity=0.352 Sum_probs=93.9
Q ss_pred EEEEEEECCCCCCC--CCEEEE--EEE-------CCCCCCCCCCCCCCC---------------------CCCEECCCCC
Q ss_conf 05564320566777--601799--961-------576765310000222---------------------2210016887
Q gi|254780364|r 57 IFRAYSIASPCRDD--KLEFCS--IKV-------DKGFFTTYLQNIQPG---------------------DTILLHKKST 104 (224)
Q Consensus 57 ~~R~ySiaS~p~~~--~~~~~i--~~~-------~~g~~s~~l~~~~~g---------------------d~~~~~~~p~ 104 (224)
..|.|||||+|... .+.+.+ ++. ..|-+|+||.++..+ +.+-+.-.+
T Consensus 177 ~PR~YSIsSSp~~~p~~v~ltv~vv~~~~~~~~~~~GlcS~~L~~l~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~ir~- 255 (416)
T cd06204 177 QPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR- 255 (416)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-
T ss_conf 7740002467446999699999999844599973020013667623422234433444433444334678658999834-
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---H-CCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5335644676881799965868088999999865---3-08863389999405864-54304888998875332101246
Q gi|254780364|r 105 GDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPE---T-YKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIG 179 (224)
Q Consensus 105 g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~---~-~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~ 179 (224)
+.|.+... +..++||||.|||||||+|++++-. . ....++.+||||+|+++ |.+|++|++++.++-
T Consensus 256 s~F~LP~~-~~~PiIMIgpGTGiAPFr~FlqeR~~~~~~~~~~G~~~LffGcR~~~~D~lY~~El~~~~~~g-------- 326 (416)
T cd06204 256 SNFRLPTK-PSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLG-------- 326 (416)
T ss_pred CCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--------
T ss_conf 76668988-888769981686618789999999999851876576699952688652415899999999759--------
Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 8759998105788776672168785
Q gi|254780364|r 180 QKLKFYRTVTQEDYLYKGRITNHIL 204 (224)
Q Consensus 180 ~~~~~~~~isre~~~~~GrIt~~i~ 204 (224)
.-.++..+.||+.. .+-+|+++|.
T Consensus 327 ~l~~l~~AFSRd~~-~k~YVQd~i~ 350 (416)
T cd06204 327 GLLELVTAFSREQP-KKVYVQHRLA 350 (416)
T ss_pred CCEEEEEEEECCCC-CCCCHHHHHH
T ss_conf 94599989957898-8885799999
No 69
>KOG0039 consensus
Probab=99.75 E-value=3.5e-17 Score=124.81 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=116.4
Q ss_pred CEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 21178989984799869999807899973898578803145861105564320566777601799961576765310000
Q gi|254780364|r 12 VYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNI 91 (224)
Q Consensus 12 ~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~ 91 (224)
..+.++++..=+..++.++.+.+|.+|.|+||||+.+.+|.-....|+||||+|+|+++.+..+|+ +. |+.|..|.+.
T Consensus 354 ~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk-~~-g~wT~~L~~~ 431 (646)
T KOG0039 354 QKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIK-AL-GDWTEKLRNA 431 (646)
T ss_pred HCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEE-EC-CCHHHHHHHH
T ss_conf 508346689980798379997369888778888899977603452457857435898997999999-44-8566999998
Q ss_pred CC------------CCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC----------------C
Q ss_conf 22------------2221001688753356446768817999658680889999998653088----------------6
Q gi|254780364|r 92 QP------------GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKK----------------F 143 (224)
Q Consensus 92 ~~------------gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~----------------~ 143 (224)
.. ....+.+.||+|.-.. +.....+++||+||+|+||+.|+++++..+.. .
T Consensus 432 ~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~-d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~ 510 (646)
T KOG0039 432 FSEVSQPPESDKSYPFPKILIDGPYGAPSQ-DVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKL 510 (646)
T ss_pred HHCCCCCCCCCCCCCCCEEEEECCCCCCCC-CHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 634135655454446865998789999740-4322463899837877586477789998415667776764466643111
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 33899994058645430488899887
Q gi|254780364|r 144 DEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 144 ~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
+++.++|-+|...++.+...+.....
T Consensus 511 ~~~~F~Wv~~~~~sf~wf~~~l~~v~ 536 (646)
T KOG0039 511 KKVYFYWVTREQRSFEWFKGLLTEVE 536 (646)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 45159997042002799998989978
No 70
>KOG1158 consensus
Probab=99.74 E-value=1.4e-17 Score=127.22 Aligned_cols=139 Identities=19% Similarity=0.274 Sum_probs=96.8
Q ss_pred CEEEEEEECCCCCCCC--CEEEEE--EE--CC------CCCCCCCCCCCCCCCCE--ECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 1055643205667776--017999--61--57------67653100002222210--01688753356446768817999
Q gi|254780364|r 56 PIFRAYSIASPCRDDK--LEFCSI--KV--DK------GFFTTYLQNIQPGDTIL--LHKKSTGDLILDSLIPGNRLYLF 121 (224)
Q Consensus 56 ~~~R~ySiaS~p~~~~--~~~~i~--~~--~~------g~~s~~l~~~~~gd~~~--~~~~p~g~f~~~~~~~~~~lvlI 121 (224)
...|.|||+|+|.-.. +.+.+. .. +. |.+|+||.++.+|+.+. +..++. .|.+... +..++|||
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s-~frlp~d-p~~PiIMI 497 (645)
T KOG1158 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKS-MFRLPSD-PSTPIIMI 497 (645)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEHHHHHHHCCCCCCCCCCEEECCC-CEECCCC-CCCCEEEE
T ss_conf 256541135675568887899999965136788876212313668744775556764355552-3015999-99967998
Q ss_pred ECCCCHHHHHHHHHHHHHCCCCC-----EEEEEEECCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 65868088999999865308863-----38999940586454-3048889988753321012468759998105788776
Q gi|254780364|r 122 SMGTGIAPFASMIRDPETYKKFD-----EVIITHTCGRVAEL-QYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLY 195 (224)
Q Consensus 122 AgGtGiaP~~silr~~~~~~~~~-----~i~l~~g~R~~~dl-~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~ 195 (224)
|.|||||||+|+++........+ .++||||+|+.++. +|++|++++.++ +.++++....|||....
T Consensus 498 GpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~--------~~l~~l~~A~SReq~~~ 569 (645)
T KOG1158 498 GPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKA--------GILTRLDVAFSREQTPK 569 (645)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--------CCCHHHEEEEECCCCCC
T ss_conf 3787613049999999986521766786559998278824888889999988746--------84012214650267887
Q ss_pred CCCCHHHHH
Q ss_conf 672168785
Q gi|254780364|r 196 KGRITNHIL 204 (224)
Q Consensus 196 ~GrIt~~i~ 204 (224)
+=+|++.|.
T Consensus 570 k~YVQd~l~ 578 (645)
T KOG1158 570 KIYVQDRLR 578 (645)
T ss_pred CEEHHHHHH
T ss_conf 035165999
No 71
>PRK06214 sulfite reductase; Provisional
Probab=99.74 E-value=3.8e-17 Score=124.62 Aligned_cols=182 Identities=15% Similarity=0.204 Sum_probs=129.6
Q ss_pred CEEEEEEEEEECCC-----CEEEEEEECC-CCCCCCCCCEEEECCCCCC-------------------------------
Q ss_conf 21178989984799-----8699998078-9997389857880314586-------------------------------
Q gi|254780364|r 12 VYCESVISVKHYTD-----RLFRFCITRP-KSFRFRSGEFVMLGLIVNG------------------------------- 54 (224)
Q Consensus 12 ~~~~~V~~~~~~T~-----~~~~l~l~~p-~~~~f~aGQ~~~l~~~~~g------------------------------- 54 (224)
=|.++|+.++.+|- ++..+.|... .++.|+||..+.|.-.++.
T Consensus 175 P~~A~l~~n~~Lt~~gS~KetrHiE~dl~gSgl~Y~~GDaLgV~P~N~p~lV~~~l~~lgl~~d~~v~~~~L~eaL~~~~ 254 (537)
T PRK06214 175 PVEATFLSRRRLNKPGSEKETWHIEFDLEGSGIDYEVGDSFGLFPANDPALVDAVIAALGAPPEFPIAGKTLREALLDDV 254 (537)
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCC
T ss_conf 85325530022068998844799999618998830689978996169999999999985889874127733999985323
Q ss_pred -----------------------------------------------------------------CCEEEEEEECCCCCC
Q ss_conf -----------------------------------------------------------------110556432056677
Q gi|254780364|r 55 -----------------------------------------------------------------RPIFRAYSIASPCRD 69 (224)
Q Consensus 55 -----------------------------------------------------------------~~~~R~ySiaS~p~~ 69 (224)
....|.|||+|+|..
T Consensus 255 ~i~~~~~~l~~~~a~~~~~~~~~~l~~l~~~~~~~~~~~~~~vld~L~~fp~~~~~~~~ll~~L~pL~PR~YSISSSp~~ 334 (537)
T PRK06214 255 SLKPAPDMLFQLISYITGGARRKKARALAAGEDPDGDAATLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYSISSSPKA 334 (537)
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf 14589889999999982873349999764355702345328899999867567999999997514678723320478667
Q ss_pred C--CCEEEEE--EE------CCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 7--6017999--61------57676531000-022222100168875335644676881799965868088999999865
Q gi|254780364|r 70 D--KLEFCSI--KV------DKGFFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPE 138 (224)
Q Consensus 70 ~--~~~~~i~--~~------~~g~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~ 138 (224)
. .+.+.+. +. ..|.+|++|.+ ...|+.+-+.-.+...|.+... +..++|||+.|||||||++++++-.
T Consensus 335 ~p~~VhLTV~vVry~~~gr~R~Gv~StyLadrl~~g~~V~vfv~~~~~FrlP~d-~~~PiIMIGpGTGiAPFR~FlqeR~ 413 (537)
T PRK06214 335 TPGRLSLTVDAVRYEIGKRLRLGVASTFLGERVAPGTKVRVYVQKAHGFALPAD-PNTPIIMVGPGTGIAPFRAFLHERA 413 (537)
T ss_pred CCCEEEEEEEEEEEECCCCCCCCEECHHHHHCCCCCCEEEEEEEECCCCCCCCC-CCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 999679999999851698414876253233026899978999843788668989-9987489647877277899999999
Q ss_pred HCCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 30886338999940586-454304888998875332101246875999810578877667216878
Q gi|254780364|r 139 TYKKFDEVIITHTCGRV-AELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHI 203 (224)
Q Consensus 139 ~~~~~~~i~l~~g~R~~-~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i 203 (224)
..+..++.+||||+|+. .|.+|++|+++|.++-. =.+.....||+.. .+-+|++.|
T Consensus 414 a~~~~G~~wLfFG~r~~~~DflY~~E~~~~~~~G~--------Lt~l~~AfSRdq~-~KvYVQdri 470 (537)
T PRK06214 414 ATKAPGRNWLFFGHQRSATDFFYEDELNGMKTAGV--------LTRLSLAWSRDGG-EKTYVQDRM 470 (537)
T ss_pred HCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCC--------CCEEEEEECCCCC-CCCCHHHHH
T ss_conf 61388873898744568888213999999996698--------6305779766899-977078899
No 72
>pfam00175 NAD_binding_1 Oxidoreductase NAD-binding domain. Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.
Probab=99.66 E-value=8.7e-17 Score=122.42 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=65.9
Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC--CCCCCC
Q ss_conf 996586808899999986530886338999940586454304888998875332101246875999810578--877667
Q gi|254780364|r 120 LFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DYLYKG 197 (224)
Q Consensus 120 lIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre--~~~~~G 197 (224)
||||||||||++||+++++..+..++++|+||+|+.+|++|.++|++|+++++ ++.++++.+.+ |...+|
T Consensus 1 lIAgG~GitP~~sml~~~~~~~~~~~v~l~~g~r~~~d~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~G 72 (106)
T pfam00175 1 MIAGGTGIAPLYSVLKALLEDEDGTEVYLVYGNRTEDDLLLREELEELAKKYP--------NLKVVAVSRTDDGWYGRKG 72 (106)
T ss_pred CEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--------CEEEEEEECCCCCCCCCCC
T ss_conf 90889659999999999997189986899995499899981899999999889--------9099999714788888775
Q ss_pred CCHHHHH
Q ss_conf 2168785
Q gi|254780364|r 198 RITNHIL 204 (224)
Q Consensus 198 rIt~~i~ 204 (224)
|||+.+.
T Consensus 73 ~v~~~~~ 79 (106)
T pfam00175 73 YVTDALL 79 (106)
T ss_pred CCCHHHH
T ss_conf 5899999
No 73
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.63 E-value=3.2e-14 Score=106.74 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=132.7
Q ss_pred EEEEEECCCCCC---CCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999980789997---38985788031458611055643205667776017999615767653100002222210016887
Q gi|254780364|r 28 FRFCITRPKSFR---FRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKST 104 (224)
Q Consensus 28 ~~l~l~~p~~~~---f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~gd~~~~~~~p~ 104 (224)
..|+|.-|-.++ ...|||+-|+-..+|+...--||....|.+....-...+...|.+..|+..+.+||.+..- ..+
T Consensus 933 ~~l~f~~p~~~q~~g~~~~~~~~~r~~~~g~~~~~~~~p~~~p~~~g~~~~~~~~~~~~~~~w~~~~~pg~~ve~k-~~~ 1011 (1167)
T PTZ00306 933 RVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTLKEWISALRPGDSVEMK-ACG 1011 (1167)
T ss_pred EEEEEECCCHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEE-CCC
T ss_conf 6999746625643564422069995022575024555563367767447899634777689899835999806763-157
Q ss_pred CC----------CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 53----------356446768817999658680889999998653088---63389999405864543048889988753
Q gi|254780364|r 105 GD----------LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKK---FDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 105 g~----------f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~---~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
|. |.+. ...-+.+.+||||+|+|||+.|+|..+.... -..|.|+|.+-...+|.|++-|+++.+++
T Consensus 1012 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~apm~q~~~aa~~~~~~~~~~~~~~~y~a~~~~~~~~r~~l~~~~~~~ 1090 (1167)
T PTZ00306 1012 GLRIERRPADKQFVFR-GHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKEN 1090 (1167)
T ss_pred CEEEECCHHHHHHHHC-CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHCHHHHHHHHHHHHC
T ss_conf 4688436355332213-541001578825876326999999985286546500167786613010120999999988758
Q ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCHHHHCC
Q ss_conf 321012468759998105788776672168785860699678
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMG 213 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~g~l~~~~~ 213 (224)
| ++|++.-++.+++..|+|-|. +++...|...+.
T Consensus 1091 ~-------~~f~~~f~~~~p~~~w~~~v~-~~~~~~~~~~~~ 1124 (1167)
T PTZ00306 1091 P-------GKFKCHFVLNNPPEGWTDGVG-FVDRALLQSALQ 1124 (1167)
T ss_pred C-------CCEEEEEEECCCCCCCCCCCC-CHHHHHHHHCCC
T ss_conf 8-------764789980699855436544-000687862469
No 74
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=99.63 E-value=4.2e-16 Score=118.21 Aligned_cols=131 Identities=18% Similarity=0.257 Sum_probs=105.7
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEE--EE--------CCCCCCCCCCC-CCCCCCCEECCCC
Q ss_conf 8999738985788031458611055643205667776017999--61--------57676531000-0222221001688
Q gi|254780364|r 35 PKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSI--KV--------DKGFFTTYLQN-IQPGDTILLHKKS 103 (224)
Q Consensus 35 p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~--~~--------~~g~~s~~l~~-~~~gd~~~~~~~p 103 (224)
|.+++.-|=||+.|-=| ...|-|||||+-.+-.-++|+. .| .-|+.|++|-. +..||.+-+.--+
T Consensus 395 Pap~~l~a~~li~lLRP----L~PRLYSIaSSq~ev~dEVHlTVg~V~y~~~G~~r~GgaS~fLA~rl~~gd~v~vyve~ 470 (628)
T TIGR01931 395 PAPADLDAEQLISLLRP----LTPRLYSIASSQAEVDDEVHLTVGVVRYEAEGRARLGGASGFLAERLEEGDTVKVYVER 470 (628)
T ss_pred CCCCCCCHHHHHHHHCC----CCCCHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEECCCHHHHHHHCCCCCEEEEEEEE
T ss_conf 99863597999997477----88511218889865688068876688982056477441057788650889767788751
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-HHHHHHHHHHHHHHHH
Q ss_conf 753356446768817999658680889999998653088633899994058-6454304888998875
Q gi|254780364|r 104 TGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGR-VAELQYGIDVMHEISQ 170 (224)
Q Consensus 104 ~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~-~~dl~~~~el~~l~~~ 170 (224)
...|.+++. +..+||||+-|||||||||++++=.+.+-.++-+||||+-+ ..|.+|.-|..++.++
T Consensus 471 N~nFRLP~d-~dtPiIMIGpGTGvAPFRaF~QeR~~~~A~GknWLFFGnpHF~~DFLYQ~EWQ~ylK~ 537 (628)
T TIGR01931 471 NDNFRLPED-PDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQKYLKK 537 (628)
T ss_pred CCCCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 778888888-8978787368778000023578876348998625321788713213578999999835
No 75
>KOG3378 consensus
Probab=99.62 E-value=1.2e-15 Score=115.39 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=104.9
Q ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECCCC-C---CCCCCCEEEECCCCCC---C-CEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 073421178989984799869999807899-9---7389857880314586---1-105564320566777601799961
Q gi|254780364|r 8 LAADVYCESVISVKHYTDRLFRFCITRPKS-F---RFRSGEFVMLGLIVNG---R-PIFRAYSIASPCRDDKLEFCSIKV 79 (224)
Q Consensus 8 ip~~~~~~~V~~~~~~T~~~~~l~l~~p~~-~---~f~aGQ~~~l~~~~~g---~-~~~R~ySiaS~p~~~~~~~~i~~~ 79 (224)
.=.++.+.+|++....+.|+.+|.+.+.++ | ...||||+.+.-...| + .-.|+||.+++...+++.+.++++
T Consensus 145 ~W~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~ 224 (385)
T KOG3378 145 GWDGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV 224 (385)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_conf 88985654543210013551689855888541322589984689861277630168898887640466415526887501
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 576765310000222221001688753356446--768817999658680889999998653088633
Q gi|254780364|r 80 DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSL--IPGNRLYLFSMGTGIAPFASMIRDPETYKKFDE 145 (224)
Q Consensus 80 ~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~--~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~ 145 (224)
.+|-+|.++|+..+.|+++...+|.|.|.+... .-+++++|.|||+||||++.|++........++
T Consensus 225 A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~RP 292 (385)
T KOG3378 225 AGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSSRP 292 (385)
T ss_pred HCHHHHHHHHCCCCCCCEEECCCCCCCCEEEHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 11056877602443355330168876632002344368755886377675410899998874078986
No 76
>KOG1159 consensus
Probab=99.49 E-value=8.7e-14 Score=104.05 Aligned_cols=121 Identities=25% Similarity=0.409 Sum_probs=88.0
Q ss_pred EEEEEECCCCCCCCCEEEEEEE---------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 5564320566777601799961---------5767653100002222210016887533564467688179996586808
Q gi|254780364|r 58 FRAYSIASPCRDDKLEFCSIKV---------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIA 128 (224)
Q Consensus 58 ~R~ySiaS~p~~~~~~~~i~~~---------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGia 128 (224)
.|+|||||.|..-.+++++-.+ -.|-+|+|+..+++|+.+-+.-.| |.+..+.. ..+++|||+-|||+|
T Consensus 368 PR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~-g~l~~p~~-~~~PlImVGPGTGvA 445 (574)
T KOG1159 368 PRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRP-GTLYFPSD-LNKPLIMVGPGTGVA 445 (574)
T ss_pred CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEC-CCCCCCCC-CCCCEEEECCCCCCC
T ss_conf 5224621688887606899999986400465310658998636898857888855-83426877-788769975898753
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 8999999865308863389999405864-5430488899887533210124687599981057887
Q gi|254780364|r 129 PFASMIRDPETYKKFDEVIITHTCGRVA-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY 193 (224)
Q Consensus 129 P~~silr~~~~~~~~~~i~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~ 193 (224)
|++|+++.-.. .......||||||+.+ |.+|.+|..++.+. -+++..||+..
T Consensus 446 PfRa~i~er~~-q~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~------------~~~~AFSRDqe 498 (574)
T KOG1159 446 PFRALIQERIY-QGDKENVLFFGCRNKDKDFLYEDEWTELNKR------------AFHTAFSRDQE 498 (574)
T ss_pred CHHHHHHHHHH-HCCCCCEEEEECCCCCCCCCCCCHHHHHHCC------------HHHHHCCCCCC
T ss_conf 17999999886-2457846998424677662251113432100------------22200064566
No 77
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.35 E-value=1.5e-11 Score=90.31 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=90.2
Q ss_pred CCEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCCCCC-CC--EEEEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 421178989984799869999807899-97389857880314586-11--055643205667776017999615767653
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLIVNG-RP--IFRAYSIASPCRDDKLEFCSIKVDKGFFTT 86 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l~l~~p~~-~~f~aGQ~~~l~~~~~g-~~--~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~ 86 (224)
..+.++|++++++||+++++++.+|-. -+|+||||..|+-...+ .. +.-+.+-++...++++.-+|+-..+ .|+
T Consensus 809 ~~l~a~V~~V~~lt~~ivElvV~APlAArnF~PGQFyRLQN~~~~~~~lmE~lALTga~vD~e~glis~ivle~G--~Ss 886 (1048)
T PRK06567 809 YLLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDIAKLIEPVALSPIDIDVEKGLISFIVYEVG--KST 886 (1048)
T ss_pred HHHCCEEEEEECCCCCEEEEEEECHHHHHCCCCCCEEEEEECCCCCHHHHCCEEEECCCCCCCCCEEEEEEEECC--CCH
T ss_conf 652128999981699779999967657852899757887402455432301246411322356884899999418--855
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 10000222221001688753356446768817999658680889999998
Q gi|254780364|r 87 YLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 (224)
Q Consensus 87 ~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~ 136 (224)
.|+.....++-++..||.|. +.+++.++++++|+||.|-|-+.|++|.
T Consensus 887 ~Lc~~L~pgepvvLMGPTG~--PTeIp~~etV~lvgGg~GnavLf~ilr~ 934 (1048)
T PRK06567 887 SLCKTLSENEKVVLMGPTGS--PLEIPQNKKIVIVDSEVGNIGLLKVLKE 934 (1048)
T ss_pred HHHHHCCCCCEEEEECCCCC--CCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 67863789980698579999--8537999769998687308899999997
No 78
>PRK05802 hypothetical protein; Provisional
Probab=99.10 E-value=2.6e-09 Score=76.70 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=114.5
Q ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECCCCC---CCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCC
Q ss_conf 0734211789899847998699998078999---7389857880314586110556432056677760179996157676
Q gi|254780364|r 8 LAADVYCESVISVKHYTDRLFRFCITRPKSF---RFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFF 84 (224)
Q Consensus 8 ip~~~~~~~V~~~~~~T~~~~~l~l~~p~~~---~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~ 84 (224)
--.+.|..+|++++...++++.|+|..|..+ -.+||-|+.|+-+......--|.||..+..++.+.-..+.+ .|.-
T Consensus 61 ~~R~t~~~~Ii~k~~i~d~l~il~~kvp~kLa~~L~~PGSfVFlR~~~~~~yfd~PISIM~~d~~~~ii~vaiei-~G~K 139 (328)
T PRK05802 61 EGRKTYECKIIKKEEIEDNLIVLTLKVPHKLARDLVYPGSFVFLRNKNSNPFFDVPISIMESDTEENIIKVAIEV-RGIK 139 (328)
T ss_pred CCCCEEEEEEEEEEECCCCEEEEEEECCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEEEEEE-ECCC
T ss_conf 412058999876564278569999718689999706897589985798887524654887615556759999997-1234
Q ss_pred CCCCCCCCCCCCCEECCCC-CCCCCCCCC--CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHH
Q ss_conf 5310000222221001688-753356446--7688179996586808899999986530886338999940586454304
Q gi|254780364|r 85 TTYLQNIQPGDTILLHKKS-TGDLILDSL--IPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYG 161 (224)
Q Consensus 85 s~~l~~~~~gd~~~~~~~p-~g~f~~~~~--~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~ 161 (224)
|..+.+.+.++.+++.+|. .|-|-+... ..+.+.++||.|+|.||+.+++|.+...+ .+|.++..-..-++.+-.
T Consensus 140 Tk~i~~~~~~~~i~iRGPywNGifGlk~I~~~kn~k~LvIaRGIgqAP~vpVikkL~~n~--NkV~vIid~~~~~~~fI~ 217 (328)
T PRK05802 140 TKKILNLNKGEEILIRGPYWNGVFGLKNIKSTKNGKSLVIARGIGQAPAVPVIKKLYSNG--NKVIVILDKGPFENNFIK 217 (328)
T ss_pred CHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCC--CEEEEEECCCCCCCHHHH
T ss_conf 030331246876999677424403705675057973999935623255559999998689--979999858855316599
Q ss_pred HHHHHH
Q ss_conf 888998
Q gi|254780364|r 162 IDVMHE 167 (224)
Q Consensus 162 ~el~~l 167 (224)
+.|+++
T Consensus 218 eyl~~~ 223 (328)
T PRK05802 218 EYLEEY 223 (328)
T ss_pred HHHHHC
T ss_conf 999857
No 79
>pfam08022 FAD_binding_8 FAD-binding domain.
Probab=98.96 E-value=2.9e-09 Score=76.41 Aligned_cols=87 Identities=21% Similarity=0.373 Sum_probs=64.1
Q ss_pred EEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCC----
Q ss_conf 8998479986999980789-99738985788031458611055643205667776017999615767653100002----
Q gi|254780364|r 18 ISVKHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQ---- 92 (224)
Q Consensus 18 ~~~~~~T~~~~~l~l~~p~-~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~---- 92 (224)
..++-+.+++.++++.+|. .+.|+||||+.|.+|..+...++||||+|+|.++.+.++| |.. |++|..|.+..
T Consensus 7 A~v~~lp~~v~~l~i~rp~~~~~~~pGq~vyl~~p~is~~q~HPFTI~s~p~~~~l~~~i-k~~-gg~T~~L~~~~~~~~ 84 (103)
T pfam08022 7 AKVSLLPDNVVELIVSKPKKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKLSVHI-KAK-GGWTKKLAKYLSSSP 84 (103)
T ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCEEEEEE-EEC-CCHHHHHHHHHHHCC
T ss_conf 899997899699999889997889998399999796576534882303467699899999-969-987799999987451
Q ss_pred CCC---CCEECCCCCCC
Q ss_conf 222---21001688753
Q gi|254780364|r 93 PGD---TILLHKKSTGD 106 (224)
Q Consensus 93 ~gd---~~~~~~~p~g~ 106 (224)
.++ ..+.+.||+|.
T Consensus 85 ~~~~~~~~v~ieGPYG~ 101 (103)
T pfam08022 85 ENNKDKPRVLIEGPYGP 101 (103)
T ss_pred CCCCCCCEEEEECCCCC
T ss_conf 36887538999998789
No 80
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=98.90 E-value=3.8e-08 Score=69.51 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=104.3
Q ss_pred EEEEEECCCCEEEEEEECCCC--C-CCCCCCEEEECCCCCCC-------------------CEEEEEEECC-CCCCCCCE
Q ss_conf 989984799869999807899--9-73898578803145861-------------------1055643205-66777601
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKS--F-RFRSGEFVMLGLIVNGR-------------------PIFRAYSIAS-PCRDDKLE 73 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~--~-~f~aGQ~~~l~~~~~g~-------------------~~~R~ySiaS-~p~~~~~~ 73 (224)
|++++++|++..+++|..++- | ...+|||+.|.+|..|+ +..|.|++-+ .+..+++.
T Consensus 1 V~~~~~lsp~~~Ritl~g~~l~~~~~~~~~~~vkl~~p~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 90169769996999996686100888999887999847999877778766642357878888787774011778789799
Q ss_pred EEEEEECC-CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 79996157-67653100002222210016887533564467688179996586808899999986530886338999940
Q gi|254780364|r 74 FCSIKVDK-GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTC 152 (224)
Q Consensus 74 ~~i~~~~~-g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~ 152 (224)
+-+....+ |..+.|..+.++||.+.+. +|+|.+.+.. +...++|+|==|++.-+.+||+.+-.. .+.+.+.-+
T Consensus 81 iDfvlH~~~Gpas~WA~~a~~GD~i~i~-gP~g~~~~~~--~~~~~ll~gDeTAlPAia~iLe~lp~~---~~~~~~iev 154 (235)
T cd06193 81 IDFVLHGDEGPASRWAASAQPGDTLGIA-GPGGSFLPPP--DADWYLLAGDETALPAIAAILEELPAD---ARGTALIEV 154 (235)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCEEEEE-CCCCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHCCCC---CEEEEEEEE
T ss_conf 9999679998579999858999977888-6898878999--877799982442489999999868899---849999997
Q ss_pred CCHHHHH
Q ss_conf 5864543
Q gi|254780364|r 153 GRVAELQ 159 (224)
Q Consensus 153 R~~~dl~ 159 (224)
.+.+|..
T Consensus 155 ~~~~d~~ 161 (235)
T cd06193 155 PDAADEQ 161 (235)
T ss_pred CCHHHCC
T ss_conf 9878725
No 81
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=98.77 E-value=4.5e-07 Score=62.97 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=107.5
Q ss_pred HHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCC---CC-CCEEEECCCCCCC--------------------CEEEEE
Q ss_conf 22073421178989984799869999807899973---89-8578803145861--------------------105564
Q gi|254780364|r 6 SELAADVYCESVISVKHYTDRLFRFCITRPKSFRF---RS-GEFVMLGLIVNGR--------------------PIFRAY 61 (224)
Q Consensus 6 ~~ip~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f---~a-GQ~~~l~~~~~g~--------------------~~~R~y 61 (224)
.....+.+.++|+.++++||...++.|..++...| .+ +|++.|-+|..+. ++.|.|
T Consensus 11 ~~~~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~Y 90 (265)
T COG2375 11 VRLGPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTY 90 (265)
T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33566654899998886289739999945552555555678730699825865787777643332235763347776453
Q ss_pred EECC-CCCCCCCEEEEEEE-CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3205-66777601799961-576765310000222221001688753356446768817999658680889999998653
Q gi|254780364|r 62 SIAS-PCRDDKLEFCSIKV-DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPET 139 (224)
Q Consensus 62 SiaS-~p~~~~~~~~i~~~-~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~ 139 (224)
+|-+ .+...++.+-++.. ++|..|+|..+.++||.+.+.+ |.|.+.+++ ....++||+==|++--+..||+++-.
T Consensus 91 TiR~~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~G-P~g~~~p~~--~~~~~lLigDetAlPAIa~iLE~lp~ 167 (265)
T COG2375 91 TIRAVDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMG-PRGSLVPPE--AADWYLLIGDETALPAIARILETLPA 167 (265)
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCHHHHHHCCCCCEEEEEC-CCCCCCCCC--CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 004531666679899997179986306686488999899857-888777998--75528996352125899999986888
Q ss_pred CCCCCEEEEEEECCCHHHH
Q ss_conf 0886338999940586454
Q gi|254780364|r 140 YKKFDEVIITHTCGRVAEL 158 (224)
Q Consensus 140 ~~~~~~i~l~~g~R~~~dl 158 (224)
.. +...+--+.+.+|.
T Consensus 168 ~~---~~~a~lev~d~ad~ 183 (265)
T COG2375 168 DT---PAEAFLEVDDAADR 183 (265)
T ss_pred CC---CEEEEEEECCHHHH
T ss_conf 88---35899993886883
No 82
>pfam08030 NAD_binding_6 Ferric reductase NAD binding domain.
Probab=98.70 E-value=1.5e-07 Score=65.88 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=45.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHC---CCCCEEEEEEECCCHHHHH-HHHHHHHHHHH
Q ss_conf 8179996586808899999986530---8863389999405864543-04888998875
Q gi|254780364|r 116 NRLYLFSMGTGIAPFASMIRDPETY---KKFDEVIITHTCGRVAELQ-YGIDVMHEISQ 170 (224)
Q Consensus 116 ~~lvlIAgGtGiaP~~silr~~~~~---~~~~~i~l~~g~R~~~dl~-~~~el~~l~~~ 170 (224)
.+++|||||+||||++|+++++... ...+++.|+|.+|+.+.+- |.+||.++..+
T Consensus 2 d~vlliaGG~GIT~~~~~~~~l~~~~~~~~~~~v~~iW~vR~~~~l~wf~~eL~~l~~~ 60 (148)
T pfam08030 2 DNLLLVAGGSGITPFISILRDLINKSKKNTLKSIKFYWVVRDLSSLEWFKKELLELKER 60 (148)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 77999814637859999999999841456665489999977855889999999999725
No 83
>pfam08021 FAD_binding_9 Siderophore-interacting FAD-binding domain.
Probab=98.21 E-value=6e-06 Score=56.06 Aligned_cols=91 Identities=24% Similarity=0.393 Sum_probs=69.6
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCC---CCCCEEEECCCCCCC--------------------CEEEEEEECC-CCCCCC
Q ss_conf 8989984799869999807899973---898578803145861--------------------1055643205-667776
Q gi|254780364|r 16 SVISVKHYTDRLFRFCITRPKSFRF---RSGEFVMLGLIVNGR--------------------PIFRAYSIAS-PCRDDK 71 (224)
Q Consensus 16 ~V~~~~~~T~~~~~l~l~~p~~~~f---~aGQ~~~l~~~~~g~--------------------~~~R~ySiaS-~p~~~~ 71 (224)
||++++++|+...+++|..++--.| .+|||+.|-+|..+. +..|.|++-+ .+...+
T Consensus 1 TV~~~~~lsP~m~Rvtl~g~~l~~f~~~~~d~~vkL~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~ 80 (116)
T pfam08021 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPGEQRPIMRTYTVRSFDPAAGE 80 (116)
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE
T ss_conf 93337977999899999688721087789987799996699987566851364432377777886867525538687997
Q ss_pred CEEEEEEE-CCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 01799961-5767653100002222210016887533
Q gi|254780364|r 72 LEFCSIKV-DKGFFTTYLQNIQPGDTILLHKKSTGDL 107 (224)
Q Consensus 72 ~~~~i~~~-~~g~~s~~l~~~~~gd~~~~~~~p~g~f 107 (224)
+.+-++.. ..|..+.|....++||.+.+.+ |+|.|
T Consensus 81 idiDfvlHg~~Gpas~WA~~A~pGD~i~i~G-P~g~~ 116 (116)
T pfam08021 81 LDIDFVLHGDEGPASRWAARAQPGDTLGIGG-PGGSF 116 (116)
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCEEEEEC-CCCCC
T ss_conf 9999998089981688997589999999978-88889
No 84
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=85.91 E-value=1.5 Score=22.95 Aligned_cols=19 Identities=11% Similarity=-0.144 Sum_probs=13.1
Q ss_pred CCCCEEEEECCCCHHHHHH
Q ss_conf 6881799965868088999
Q gi|254780364|r 114 PGNRLYLFSMGTGIAPFAS 132 (224)
Q Consensus 114 ~~~~lvlIAgGtGiaP~~s 132 (224)
+++.++||-||+-=|-.+.
T Consensus 183 ~~~~~iLV~GGSqGA~~iN 201 (352)
T PRK12446 183 RKKPVITIMGGSLGAKKIN 201 (352)
T ss_pred CCCCEEEEECCCHHHHHHH
T ss_conf 7785799973751179999
No 85
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=84.38 E-value=1.7 Score=22.67 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=17.2
Q ss_pred CCEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 81799965868-0889999998653088633899
Q gi|254780364|r 116 NRLYLFSMGTG-IAPFASMIRDPETYKKFDEVII 148 (224)
Q Consensus 116 ~~lvlIAgGtG-iaP~~silr~~~~~~~~~~i~l 148 (224)
+.+++.||||| |-|-+++++++..+++.-+|.+
T Consensus 6 ~~~~~~gGGTGG~fPAlA~a~~l~~~~~~~~v~~ 39 (368)
T TIGR01133 6 KKVALAGGGTGGIFPALAVAEELIKRGPEVEVVW 39 (368)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 2899972783026899999999997489369998
No 86
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=83.23 E-value=2.5 Score=21.63 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=20.9
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHHH-CCCCCEEEEEEECCCHH
Q ss_conf 88179996586-80889999998653-08863389999405864
Q gi|254780364|r 115 GNRLYLFSMGT-GIAPFASMIRDPET-YKKFDEVIITHTCGRVA 156 (224)
Q Consensus 115 ~~~lvlIAgGt-GiaP~~silr~~~~-~~~~~~i~l~~g~R~~~ 156 (224)
++..+||-||+ |-..+--++..... -....++.++|-+...+
T Consensus 181 ~~~~iLV~GGSqGa~~~N~~v~~~l~~l~~~~~~~i~~~~G~~~ 224 (359)
T PRK00726 181 GPPTLLVVGGSQGARVLNEAVPEALALLPEELRIQVIHQTGKKD 224 (359)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
T ss_conf 88579997685204789999999999876525908999828403
No 87
>pfam00667 FAD_binding_1 FAD binding domain. This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase.
Probab=82.83 E-value=2.1 Score=22.08 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCCEEEEEEEEEECCC-----CEEEEEEECC-CCCCCCCCCEEEECCCCCCCCEEEEEE
Q ss_conf 3421178989984799-----8699998078-999738985788031458611055643
Q gi|254780364|r 10 ADVYCESVISVKHYTD-----RLFRFCITRP-KSFRFRSGEFVMLGLIVNGRPIFRAYS 62 (224)
Q Consensus 10 ~~~~~~~V~~~~~~T~-----~~~~l~l~~p-~~~~f~aGQ~~~l~~~~~g~~~~R~yS 62 (224)
..-|.++|++.+.+|. +++.+.|.-+ .++.|+||..+.|.-....+.+.+-..
T Consensus 5 ~nP~~a~v~~n~~Lt~~~s~k~~~Hie~dl~~s~l~Y~pGD~l~V~P~N~~~~V~~~l~ 63 (217)
T pfam00667 5 KNPFLASVVVNRELTKPGSDRSCIHLELDISGSGLRYQTGDHLGVYPPNNEELVEELLE 63 (217)
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99717188778872799988369999997489997143589899974799999999999
No 88
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=79.81 E-value=4 Score=20.40 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=12.3
Q ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 530886338999940586454304888998
Q gi|254780364|r 138 ETYKKFDEVIITHTCGRVAELQYGIDVMHE 167 (224)
Q Consensus 138 ~~~~~~~~i~l~~g~R~~~dl~~~~el~~l 167 (224)
+.++..+++..+=|.....-|=--+-+.++
T Consensus 241 L~~G~~GE~YNIgg~~Er~NlE~V~~Il~~ 270 (340)
T TIGR01181 241 LEKGRVGEVYNIGGGNERTNLEVVEIILEL 270 (340)
T ss_pred HHCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 826952125643787622128899999987
No 89
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.27 E-value=4.3 Score=20.21 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCCEEEEECCC-CHHHHHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf 688179996586-808899999986530886338999940586
Q gi|254780364|r 114 PGNRLYLFSMGT-GIAPFASMIRDPETYKKFDEVIITHTCGRV 155 (224)
Q Consensus 114 ~~~~lvlIAgGt-GiaP~~silr~~~~~~~~~~i~l~~g~R~~ 155 (224)
+++.++||-||+ |-..+--.+......-...++.++|.+...
T Consensus 179 ~~~~~iLv~GGSqGa~~ln~~v~~~~~~l~~~~~~ii~~~G~~ 221 (350)
T cd03785 179 PGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG 221 (350)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 8973999984872047899999999998764496899983840
No 90
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=68.57 E-value=2 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=27.4
Q ss_pred CCCCC-CCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 53100-0022222100168875335644676881799965868088
Q gi|254780364|r 85 TTYLQ-NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129 (224)
Q Consensus 85 s~~l~-~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP 129 (224)
.+.|+ +..+.|++..++----.+..++ .=++|++.||||+|+
T Consensus 35 GH~la~R~iv~DD~y~iRA~Vs~WIAd~---~VqVil~TGGTGfTg 77 (163)
T TIGR02667 35 GHRLAERAIVKDDIYQIRAQVSEWIADP---AVQVILITGGTGFTG 77 (163)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHCCCC---CCCEEEECCCCCCCC
T ss_conf 5032114326744899999998734898---655688718823467
No 91
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro: IPR010167 This entry represents a clade of amino-acid N-acetyltransferases, or N-acetylglutamate synthase, which is the product of the argA gene and the first enzyme in arginine biosynthesis. This enzyme displays more diversity between bacteria, fungi and mammals than other enzymes in arginine metabolism, and N-acetylglutamate itself can have different roles in different taxonomic groups: in prokaryotes, lower eukaryotes and plants it is the first intermediate in arginine biosynthesis, while in vertebrates it is an allosteric cofactor for the first enzyme in the urea cycle . In bacteria, arginine can regulate ornithine biosynthesis via a feedback inhibition mechanism . This enzyme may also act on aspartate.; GO: 0004042 amino-acid N-acetyltransferase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=68.44 E-value=4.3 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=11.3
Q ss_pred HHHHH-HHCCCCCEEEEEEECCCHHHH
Q ss_conf 99986-530886338999940586454
Q gi|254780364|r 133 MIRDP-ETYKKFDEVIITHTCGRVAEL 158 (224)
Q Consensus 133 ilr~~-~~~~~~~~i~l~~g~R~~~dl 158 (224)
++.++ +-..-.-+++|+||+|.+=|-
T Consensus 37 ~v~Di~LLh~LGv~lVLvHGaRPq~~~ 63 (439)
T TIGR01890 37 IVADIALLHSLGVRLVLVHGARPQIEE 63 (439)
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHH
T ss_conf 999999997589189997088526899
No 92
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=65.30 E-value=6.2 Score=19.22 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCCCEEEEE-CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC-
Q ss_conf 688179996-58680889999998653088633899994058--64543048889988753321012468759998105-
Q gi|254780364|r 114 PGNRLYLFS-MGTGIAPFASMIRDPETYKKFDEVIITHTCGR--VAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVT- 189 (224)
Q Consensus 114 ~~~~lvlIA-gGtGiaP~~silr~~~~~~~~~~i~l~~g~R~--~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~is- 189 (224)
.|.++=|++ +|+|=|-+ +++ .++...|+|+|++|... .+||+-...-....+ -.|+ ||..|.
T Consensus 20 ~G~PvHl~GPaG~GKT~L---A~h-vA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~~~~k--------v~Dq--fihnV~K 85 (265)
T TIGR02640 20 SGYPVHLRGPAGTGKTTL---AMH-VARKRDRPVVLINGDAELTTSDLVGSYAGYTRKK--------VVDQ--FIHNVVK 85 (265)
T ss_pred CCCCEEEECCCCCCHHHH---HHH-HHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEE--------EEEC--CEEEEEC
T ss_conf 788667447888556899---999-9973689689986582326544231546752222--------3201--2111342
Q ss_pred CCC---CCC-CCCCHHHHHCCC
Q ss_conf 788---776-672168785860
Q gi|254780364|r 190 QED---YLY-KGRITNHILSGE 207 (224)
Q Consensus 190 re~---~~~-~GrIt~~i~~g~ 207 (224)
+++ ..| .+|+|....+|-
T Consensus 86 ~~d~~~~~W~D~rLt~Av~eG~ 107 (265)
T TIGR02640 86 LEDIVRQNWVDNRLTLAVREGF 107 (265)
T ss_pred CCCCCCCCCCCCHHHHHHHCCC
T ss_conf 5122002667835789975697
No 93
>PRK01581 speE spermidine synthase; Validated
Probab=63.72 E-value=11 Score=17.70 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 881799965868088999999865308863389999405864543048889988753321012
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL 177 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~ 177 (224)
.++++.++||-|+| +|+.+....-..|+|+- ...++.++++.+|.+...
T Consensus 140 ~~rVLILGGGDGLA-----lREVLKyp~Ve~VTLVD---------LDP~mt~Lar~~p~L~~L 188 (363)
T PRK01581 140 PKRVLILGGGDGLA-----LREVLKYETVLHVDLVD---------LDGSMIDMARNVPELVSL 188 (363)
T ss_pred CCEEEEEECCCHHH-----HHHHHCCCCCCEEEEEE---------CCHHHHHHHHHCHHHHHH
T ss_conf 77389980764399-----99987179856278995---------699999987519799875
No 94
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=57.15 E-value=14 Score=17.00 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=28.4
Q ss_pred CCCEE-EEECCCCHHH-HHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 88179-9965868088-99999986530886338999940586454304888998
Q gi|254780364|r 115 GNRLY-LFSMGTGIAP-FASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE 167 (224)
Q Consensus 115 ~~~lv-lIAgGtGiaP-~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l 167 (224)
.++.+ +.+||-|+.+ +..+++.++.....-+++++ +.|+++ | ++.|+..
T Consensus 201 ~~~~iLv~gG~~G~~~~~~~~i~~ll~~~~~~qivvv-cGrN~~-L--~~~L~~~ 251 (391)
T PRK13608 201 DKQTILMSAGAFGVSKGFDTMITDILAKSANAQVVMI-CGKSKE-L--KRSLTAK 251 (391)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCHH-H--HHHHHHH
T ss_conf 7768999688631024699999999715999659999-089999-9--9999976
No 95
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=57.15 E-value=14 Score=17.00 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=24.0
Q ss_pred CCCEEEEECCC-CHHHHHHHHHHHHHCCCCCEEEEEEECCCHH
Q ss_conf 88179996586-8088999999865308863389999405864
Q gi|254780364|r 115 GNRLYLFSMGT-GIAPFASMIRDPETYKKFDEVIITHTCGRVA 156 (224)
Q Consensus 115 ~~~lvlIAgGt-GiaP~~silr~~~~~~~~~~i~l~~g~R~~~ 156 (224)
++..+||.||+ |...+-.+++.+...-.. ++.++|-+....
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~ 223 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND 223 (357)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCH
T ss_conf 984899988824279999999999872121-669999769736
No 96
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=56.21 E-value=6.4 Score=19.16 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=11.5
Q ss_pred ECCCCHHHHHHHHHHHH
Q ss_conf 65868088999999865
Q gi|254780364|r 122 SMGTGIAPFASMIRDPE 138 (224)
Q Consensus 122 AgGtGiaP~~silr~~~ 138 (224)
+||-|+||+++||+++.
T Consensus 209 ~g~gGiaaLltMLqSCs 225 (254)
T COG1691 209 AGGGGIAALLTMLQSCS 225 (254)
T ss_pred CCCCCHHHHHHHHHHCC
T ss_conf 68765889999997358
No 97
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=54.44 E-value=12 Score=17.56 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=21.5
Q ss_pred EEEEECCCC--HHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 799965868--0889999998653088633899
Q gi|254780364|r 118 LYLFSMGTG--IAPFASMIRDPETYKKFDEVII 148 (224)
Q Consensus 118 lvlIAgGtG--iaP~~silr~~~~~~~~~~i~l 148 (224)
+++.||||| +-|.+++.+.+..++. ++.+
T Consensus 1 Ilia~GGTGGHv~Palala~~L~~~g~--~v~i 31 (136)
T pfam03033 1 VLLAGGGTRGHVFPAVALAWALRRRGH--EVRL 31 (136)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCC--EEEE
T ss_conf 989944157999999999999998599--7712
No 98
>PRK03612 spermidine synthase; Provisional
Probab=53.11 E-value=17 Score=16.59 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8817999658680889999998653088633899994058645430488899887533
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
-++++.|+||.|+| .+.++| ...-.+|+++- ...+..++++++|
T Consensus 294 p~~VLiiGGGdG~a-~revLk----~~~ve~v~lVe---------lD~~vv~lar~~~ 337 (516)
T PRK03612 294 ARRVLILGGGDGLA-LREVLK----YPDVEQVTLVD---------LDPAVTELARTSP 337 (516)
T ss_pred CCEEEEECCCCCHH-HHHHHC----CCCCCEEEEEE---------CCHHHHHHHHHCC
T ss_conf 77389983776087-999864----89966378995---------1889999998572
No 99
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=53.01 E-value=9.9 Score=18.00 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.0
Q ss_pred CCEEEEECCCCHHHHHHHH
Q ss_conf 8179996586808899999
Q gi|254780364|r 116 NRLYLFSMGTGIAPFASMI 134 (224)
Q Consensus 116 ~~lvlIAgGtGiaP~~sil 134 (224)
.++|.|+=||=.|-+++-|
T Consensus 191 ADlIilGPGSLyTSI~PnL 209 (331)
T TIGR01826 191 ADLIILGPGSLYTSIIPNL 209 (331)
T ss_pred CCEEEECCCHHHHHHHHHH
T ss_conf 6927877724577742432
No 100
>pfam08877 MepB MepB protein. MepB is a functionally uncharacterized protein in the mepRAB gene cluster of Staphylococcus aureus.
Probab=52.90 E-value=17 Score=16.57 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCEEEEEEECCCCCCCCCCCEEEECCCC-CCCCEEEEEEECCCCCCCCCEEEEEEECCC
Q ss_conf 99869999807899973898578803145-861105564320566777601799961576
Q gi|254780364|r 24 TDRLFRFCITRPKSFRFRSGEFVMLGLIV-NGRPIFRAYSIASPCRDDKLEFCSIKVDKG 82 (224)
Q Consensus 24 T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~-~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g 82 (224)
+...+++|+.+- =+=++|||+.+.--. .| ..+||+... ...++++.+.++
T Consensus 15 ~~~~i~~R~AK~--TP~K~G~FVt~Wkr~~~g--~~~Pf~~~d-----~~d~lvI~v~d~ 65 (123)
T pfam08877 15 NGHTIRFRLAKK--TPTKPGYFVAFWEKDENG--QNQPFDYDD-----APDLLIIVVIDD 65 (123)
T ss_pred CCEEEEEEECCC--CCCCCEEEEEEEEECCCC--CCCCCCCCC-----CCCEEEEEEECC
T ss_conf 997999984246--899850699999878999--847874334-----789799999728
No 101
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=51.62 E-value=12 Score=17.47 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEE------CCCCHHHHHH-HHHH
Q ss_conf 467688179996------5868088999-9998
Q gi|254780364|r 111 SLIPGNRLYLFS------MGTGIAPFAS-MIRD 136 (224)
Q Consensus 111 ~~~~~~~lvlIA------gGtGiaP~~s-ilr~ 136 (224)
+..++.++|||+ +|||-||+.| ++++
T Consensus 102 ~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~ 134 (365)
T TIGR00065 102 ELLEGADMVFITAGMGGGTGTGAAPVVAKIAKE 134 (365)
T ss_pred HHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 970388818997258668666635789999975
No 102
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=50.74 E-value=6.2 Score=19.25 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCEEEEECCCCHHHH
Q ss_conf 817999658680889
Q gi|254780364|r 116 NRLYLFSMGTGIAPF 130 (224)
Q Consensus 116 ~~lvlIAgGtGiaP~ 130 (224)
-++|+..||||+||=
T Consensus 68 ~DvvlttGGTG~t~R 82 (169)
T COG0521 68 VDVVLTTGGTGITPR 82 (169)
T ss_pred CCEEEECCCCCCCCC
T ss_conf 779997598368988
No 103
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=50.10 E-value=17 Score=16.60 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCHHHHHHHH-----HHHHHCCCCCEEEEEEECCCHHH-----HHHHHHHHHHH
Q ss_conf 88179996586808899999-----98653088633899994058645-----43048889988
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMI-----RDPETYKKFDEVIITHTCGRVAE-----LQYGIDVMHEI 168 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~sil-----r~~~~~~~~~~i~l~~g~R~~~d-----l~~~~el~~l~ 168 (224)
..++|+|+=|+=+|-++.+| ++.+.. ...+++.+--...+.. +-+.+-+..+.
T Consensus 189 ~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~-~~ap~i~v~n~~~~~g~~t~~~~~~d~i~~i~ 251 (323)
T COG0391 189 EADLIVIGPGSLFTSILPILLLPGIAEALRE-TVAPIVYVCNLMTQAGKETDGLSVEDHIAALA 251 (323)
T ss_pred HCCEEEECCCCCHHHHCHHHCCHHHHHHHHH-CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 5898998688327664303010579999986-78977986147788874224562899999999
No 104
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=48.08 E-value=20 Score=16.11 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=29.6
Q ss_pred CCEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 817999658680-889999998653088633899994058645430488899887533
Q gi|254780364|r 116 NRLYLFSMGTGI-APFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE 172 (224)
Q Consensus 116 ~~lvlIAgGtGi-aP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~ 172 (224)
+.+++++||-|+ .++..+++.+.... .-+++ +-+.|+++ .+++|.++...++
T Consensus 203 ~~vLimgGg~G~~g~i~~l~~~L~~~~-~~qii-VVcGrN~~---L~~~L~~~~~~~~ 255 (388)
T PRK13609 203 KILLIVAGAHGVLGNVKELCQSFMSVP-DLQVV-VVCGKNEA---LKQDLVGLQETNP 255 (388)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCC-CCEEE-EEECCCHH---HHHHHHHHHHCCC
T ss_conf 479997660121147999999974589-92499-99089989---9999998875079
No 105
>KOG3141 consensus
Probab=45.04 E-value=13 Score=17.37 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.5
Q ss_pred CCCCCCEEEECC
Q ss_conf 738985788031
Q gi|254780364|r 39 RFRSGEFVMLGL 50 (224)
Q Consensus 39 ~f~aGQ~~~l~~ 50 (224)
.|++|||+.+.-
T Consensus 162 hFk~GqyVDV~g 173 (310)
T KOG3141 162 HFKPGQYVDVTG 173 (310)
T ss_pred HCCCCCEEEEEE
T ss_conf 147875488774
No 106
>PRK09417 mogA molybdenum cofactor biosynthesis protein; Provisional
Probab=44.29 E-value=8.8 Score=18.30 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=12.8
Q ss_pred CCCEEEEECCCCHHH
Q ss_conf 881799965868088
Q gi|254780364|r 115 GNRLYLFSMGTGIAP 129 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP 129 (224)
+-++|+..||||++|
T Consensus 66 ~~dLIlTTGGTG~sp 80 (192)
T PRK09417 66 GCDLVLTTGGTGPAR 80 (192)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 988999778546797
No 107
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=44.15 E-value=21 Score=16.05 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC----CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 760179996157676531000022222100168875335644----6768817999658680889999998653088633
Q gi|254780364|r 70 DKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDS----LIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDE 145 (224)
Q Consensus 70 ~~~~~~i~~~~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~----~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~ 145 (224)
..+-..+..+++|..|++.|.....|+.+.+--.-+....+. ..++.-+-|=| |.|.| ..+.++....-
T Consensus 40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpA-G~~~a------HhliN~s~~~~ 112 (161)
T COG3837 40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPA-GVGNA------HHLINRSDVIL 112 (161)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCEEEEECCEEEEECCCCEEECCC-CCCCE------EEEEECCCCEE
T ss_conf 130101588689975561210236755899982755899889369846876421347-98534------47760577217
Q ss_pred EEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 89999405864543048889988
Q gi|254780364|r 146 VIITHTCGRVAELQYGIDVMHEI 168 (224)
Q Consensus 146 i~l~~g~R~~~dl~~~~el~~l~ 168 (224)
..|--|.|.+.|++.+-.+....
T Consensus 113 ~yL~vG~r~~~d~i~YPd~~~~~ 135 (161)
T COG3837 113 RYLEVGTREPDDIITYPDLDKVL 135 (161)
T ss_pred EEEEECCCCCCCEEECCCCCHHH
T ss_conf 99873365666413258841222
No 108
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=41.60 E-value=12 Score=17.42 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=36.2
Q ss_pred CCCEECCCCCCCCCCCC----CCCCCCEEEEECCCCHHHHHHHHHHH--HHCCCCCEEEEEEECCCHH
Q ss_conf 22100168875335644----67688179996586808899999986--5308863389999405864
Q gi|254780364|r 95 DTILLHKKSTGDLILDS----LIPGNRLYLFSMGTGIAPFASMIRDP--ETYKKFDEVIITHTCGRVA 156 (224)
Q Consensus 95 d~~~~~~~p~g~f~~~~----~~~~~~lvlIAgGtGiaP~~silr~~--~~~~~~~~i~l~~g~R~~~ 156 (224)
+++..+....+...-.+ ....++-++++|-||+||...+++.. ..++.-.+..++||.=++-
T Consensus 39 ~d~~f~DA~~~~l~de~l~e~lr~~~Pd~v~~GhtaiTp~~y~a~~~lk~~rE~lPN~~~vlGGihpT 106 (506)
T TIGR02026 39 DDVTFLDAMTDPLTDEKLVERLRAHRPDLVLIGHTAITPAIYIAEETLKVARERLPNAIIVLGGIHPT 106 (506)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 66377622368887489999997259868997265554201899999999986244355342464642
No 109
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=41.19 E-value=19 Score=16.24 Aligned_cols=19 Identities=5% Similarity=-0.043 Sum_probs=10.8
Q ss_pred CCCEEEEECCCCHHHHHHH
Q ss_conf 8817999658680889999
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASM 133 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~si 133 (224)
..++|+++=|+=.|-+++.
T Consensus 174 ~ADlIvlgPGSlyTSIiPn 192 (309)
T cd07044 174 KADNIVIGPGSLYTSILPN 192 (309)
T ss_pred HCCEEEECCCCCHHHHCCC
T ss_conf 6899998798447776641
No 110
>PRK09330 cell division protein FtsZ; Validated
Probab=40.66 E-value=21 Score=15.94 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=17.0
Q ss_pred CCCCCEEEEE------CCCCHHHHHHH-HHH
Q ss_conf 7688179996------58680889999-998
Q gi|254780364|r 113 IPGNRLYLFS------MGTGIAPFASM-IRD 136 (224)
Q Consensus 113 ~~~~~lvlIA------gGtGiaP~~si-lr~ 136 (224)
..+.++|||+ +|||.||+.+= +|+
T Consensus 94 l~g~dmvFItAGmGGGTGTGAaPviA~iAke 124 (387)
T PRK09330 94 LEGADMVFITAGMGGGTGTGAAPVVAEIAKE 124 (387)
T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 7789879996266788777604899998855
No 111
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=40.05 E-value=20 Score=16.10 Aligned_cols=79 Identities=9% Similarity=-0.069 Sum_probs=42.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC---CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 99961576765310000222221001688753356446---768817999658680889999998653088633899994
Q gi|254780364|r 75 CSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSL---IPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHT 151 (224)
Q Consensus 75 ~i~~~~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~---~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g 151 (224)
.|.|=+.|.......-....|++.-++|-||+=++.+. -+..+++||+||. |-++-+ ....+-..+..+=|+
T Consensus 237 SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~~~iqiDTs~ILFICGGA----F~GL~~-iI~~R~~~~~~iGF~ 311 (452)
T TIGR00382 237 SITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQEFIQIDTSNILFICGGA----FVGLEK-IIKKRTEKKSSIGFG 311 (452)
T ss_pred EEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEECCCCEEEEECCH----HHHHHH-HHHHHHCCCCCCCCC
T ss_conf 011221755499999987603234317544886886576886476400110543----444899-998874555333545
Q ss_pred CCCHHHH
Q ss_conf 0586454
Q gi|254780364|r 152 CGRVAEL 158 (224)
Q Consensus 152 ~R~~~dl 158 (224)
+...+.-
T Consensus 312 ~~~~~~~ 318 (452)
T TIGR00382 312 AEVKKKS 318 (452)
T ss_pred CCHHHHH
T ss_conf 5210045
No 112
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=39.78 E-value=27 Score=15.32 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=15.7
Q ss_pred EEEEEECCCCEEEEEEECCCC--CCCCCCCEEEECCCC
Q ss_conf 989984799869999807899--973898578803145
Q gi|254780364|r 17 VISVKHYTDRLFRFCITRPKS--FRFRSGEFVMLGLIV 52 (224)
Q Consensus 17 V~~~~~~T~~~~~l~l~~p~~--~~f~aGQ~~~l~~~~ 52 (224)
+..+.+++ .+| +.+..++. -..+.||-+.+.++.
T Consensus 235 Lf~IaDLs-~vW-v~a~V~E~d~~~vk~Gq~v~v~~~a 270 (407)
T PRK09783 235 VAKIQGMD-PVW-VTAAIPESIAWLVKDASQFTLTVPA 270 (407)
T ss_pred EEEEECCC-EEE-EEEEECHHHHHHCCCCCEEEEEECC
T ss_conf 69996477-289-9999627868645689889998326
No 113
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=37.32 E-value=13 Score=17.30 Aligned_cols=15 Identities=53% Similarity=0.793 Sum_probs=13.0
Q ss_pred CCCEEEEECCCCHHH
Q ss_conf 881799965868088
Q gi|254780364|r 115 GNRLYLFSMGTGIAP 129 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP 129 (224)
+-++|+..||||++|
T Consensus 61 ~~DlIittGGTG~~~ 75 (152)
T cd00886 61 GVDLILTTGGTGLAP 75 (152)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 988899668555899
No 114
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein; Provisional
Probab=37.08 E-value=17 Score=16.59 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=11.8
Q ss_pred CCCEEEEECCCCHHH
Q ss_conf 881799965868088
Q gi|254780364|r 115 GNRLYLFSMGTGIAP 129 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP 129 (224)
+-++|+..||||++|
T Consensus 205 ~~dlIlTtGGTG~s~ 219 (301)
T PRK03604 205 GVELIITTGGTGLGP 219 (301)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 997999708977899
No 115
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=36.57 E-value=30 Score=15.01 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=3.5
Q ss_pred CCEEEEEEECC
Q ss_conf 98699998078
Q gi|254780364|r 25 DRLFRFCITRP 35 (224)
Q Consensus 25 ~~~~~l~l~~p 35 (224)
|+.+-|.++-|
T Consensus 135 P~AwliNytNP 145 (425)
T cd05197 135 PDAWYLNFTNP 145 (425)
T ss_pred CCEEEEECCCH
T ss_conf 98089973787
No 116
>PRK07574 formate dehydrogenase; Provisional
Probab=36.33 E-value=31 Score=14.98 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=14.0
Q ss_pred EEEECCCCCCCCCCCEEEE
Q ss_conf 9980789997389857880
Q gi|254780364|r 30 FCITRPKSFRFRSGEFVML 48 (224)
Q Consensus 30 l~l~~p~~~~f~aGQ~~~l 48 (224)
-++..|+..+|+||+.+-.
T Consensus 35 ~~~p~p~~~~~~p~~llg~ 53 (385)
T PRK07574 35 QTLPTPKAIDFTPGELLGS 53 (385)
T ss_pred CCCCCCCCCCCCCCCEEEE
T ss_conf 6589998889987621222
No 117
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus.
Probab=36.32 E-value=31 Score=14.98 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=12.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 68817999658680889999998
Q gi|254780364|r 114 PGNRLYLFSMGTGIAPFASMIRD 136 (224)
Q Consensus 114 ~~~~lvlIAgGtGiaP~~silr~ 136 (224)
.++++++++|=--=..|..+++.
T Consensus 220 ~~~~v~a~sGIanP~~F~~~L~~ 242 (318)
T pfam02606 220 AGKRVLAFAGIGNPQRFFDTLRA 242 (318)
T ss_pred CCCEEEEEEECCCHHHHHHHHHH
T ss_conf 69848999964787999999997
No 118
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=35.87 E-value=31 Score=14.94 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 16887533564467688179996586808899999986530886338999940586454304888998875332101246
Q gi|254780364|r 100 HKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIG 179 (224)
Q Consensus 100 ~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~ 179 (224)
..|++|. .+- ..++-++|++||+ .|+-+++- ..++. +++.+|-...+...--..++.+..+++. ++
T Consensus 168 ~~G~GGL-PvG--s~Gk~l~LlSGGi--SPVAa~~m--mKRG~--~v~~vhf~~~~~~~~kv~~l~~~L~~y~-----~~ 233 (310)
T PRK08384 168 IKGWGGL-PIG--TQGKMVGLLSDEL--SAVAIFLM--MKRGV--EVIPVHIGMGEKNLEKVRKLWNQLKKYS-----YG 233 (310)
T ss_pred ECCCCCC-CCC--CCCCEEEEECCCC--CHHHHHHH--HHCCC--EEEEEEECCCHHHHHHHHHHHHHHHHHC-----CC
T ss_conf 5688998-746--7884899953886--39999999--85698--7999985688789999999999999867-----99
Q ss_pred CCEEEEEE
Q ss_conf 87599981
Q gi|254780364|r 180 QKLKFYRT 187 (224)
Q Consensus 180 ~~~~~~~~ 187 (224)
.+.+++.+
T Consensus 234 ~~~~~~~~ 241 (310)
T PRK08384 234 SKGRLVVV 241 (310)
T ss_pred CCEEEEEE
T ss_conf 84699996
No 119
>pfam01933 UPF0052 Uncharacterized protein family UPF0052.
Probab=35.38 E-value=27 Score=15.32 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=14.8
Q ss_pred CCCEEEEECCCCHHHHHHHH
Q ss_conf 88179996586808899999
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMI 134 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~sil 134 (224)
..++|.++=|+=+|-+..++
T Consensus 172 ~AD~IiigPgs~~tSI~P~L 191 (291)
T pfam01933 172 DADLIVLGPGSLFTSIGPNL 191 (291)
T ss_pred HCCEEEECCCCCHHHHCCHH
T ss_conf 59989986996166643130
No 120
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=34.89 E-value=23 Score=15.73 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=19.0
Q ss_pred CEEEEECCCCHHHHHHH---HHHHHHCCCCCEEEEEEE
Q ss_conf 17999658680889999---998653088633899994
Q gi|254780364|r 117 RLYLFSMGTGIAPFASM---IRDPETYKKFDEVIITHT 151 (224)
Q Consensus 117 ~lvlIAgGtGiaP~~si---lr~~~~~~~~~~i~l~~g 151 (224)
+-++||.|+|||-=--. +++++..+.- ++.+..+
T Consensus 3 KkIlVACGsGIATSTvva~kv~~~~~e~gi-~v~i~Q~ 39 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNI-PVELIQC 39 (94)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEE
T ss_conf 559998588375999999999999998598-0689997
No 121
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=34.71 E-value=27 Score=15.32 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCHHHHHHHH-----HHHHHCCCCCEEEEEEECCCHHHH
Q ss_conf 88179996586808899999-----986530886338999940586454
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMI-----RDPETYKKFDEVIITHTCGRVAEL 158 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~sil-----r~~~~~~~~~~i~l~~g~R~~~dl 158 (224)
..++|+++=|+=.|-+++-+ .+.....+-.+|.+.--...+.+.
T Consensus 175 ~ADlIv~gPGSlyTSiiPnLlv~gi~~AI~~s~a~kV~i~Nl~tqpgeT 223 (308)
T cd07187 175 EADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMTQPGET 223 (308)
T ss_pred HCCEEEECCCCCHHHHCCHHCCHHHHHHHHHCCCCEEEEEECCCCCHHH
T ss_conf 7998998798406655114223669999996799789996178991231
No 122
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=34.13 E-value=33 Score=14.77 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=13.4
Q ss_pred CCCEEEEECCCCHHHHHHHH
Q ss_conf 88179996586808899999
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMI 134 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~sil 134 (224)
..++|.|+=|+=+|-+..+|
T Consensus 183 ~AD~IIiGPgnp~tSI~PiL 202 (303)
T cd07186 183 DADLVIIGPSNPVTSIGPIL 202 (303)
T ss_pred HCCEEEECCCCCHHHHCCCC
T ss_conf 59989985886213215311
No 123
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=33.61 E-value=34 Score=14.72 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=16.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCH
Q ss_conf 79996586808899999986530886338999940586
Q gi|254780364|r 118 LYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRV 155 (224)
Q Consensus 118 lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~ 155 (224)
+.+++.|+| +=+.++++.+...+..-++.++.+++..
T Consensus 3 iavl~SG~G-snl~~Il~a~~~~~l~~~I~~Visn~~~ 39 (181)
T pfam00551 3 IAVLISGTG-SNLQALLDALRKGGHEVEIVAVVTNKDK 39 (181)
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 999990796-6599999999819999889999958957
No 124
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=33.33 E-value=34 Score=14.69 Aligned_cols=20 Identities=0% Similarity=0.195 Sum_probs=12.2
Q ss_pred CCCEEEEECCCCHHHHHHHH
Q ss_conf 88179996586808899999
Q gi|254780364|r 115 GNRLYLFSMGTGIAPFASMI 134 (224)
Q Consensus 115 ~~~lvlIAgGtGiaP~~sil 134 (224)
..++|.|+=|.=+|-+..+|
T Consensus 186 ~AD~IVigPsnp~tSI~PiL 205 (309)
T PRK13606 186 DADVVVIGPSNPVTSIGPIL 205 (309)
T ss_pred HCCCEEECCCCCEEEEEHHH
T ss_conf 39928986897503531131
No 125
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=32.93 E-value=35 Score=14.65 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=12.8
Q ss_pred CCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 68817999658680889999998
Q gi|254780364|r 114 PGNRLYLFSMGTGIAPFASMIRD 136 (224)
Q Consensus 114 ~~~~lvlIAgGtGiaP~~silr~ 136 (224)
.++++++++|---=..|..+|+.
T Consensus 229 ~~k~v~afsGIanP~~F~~~L~~ 251 (334)
T PRK00652 229 KGKRVVAFAGIGHPPRFFATLRN 251 (334)
T ss_pred CCCEEEEEEECCCHHHHHHHHHH
T ss_conf 79818999944886999999997
No 126
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain; InterPro: IPR011290 This entry represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=32.56 E-value=16 Score=16.68 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=49.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCCC
Q ss_conf 179996586808899999986530886338999940586454304888998875332101246-8759998105788
Q gi|254780364|r 117 RLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIG-QKLKFYRTVTQED 192 (224)
Q Consensus 117 ~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~-~~~~~~~~isre~ 192 (224)
+-+=| -|-|+.|+-.-|+ +|.+++|....+..+..+|..+|..+..|+.+... .+...+|-=|+-|
T Consensus 275 Prldi-dG~Gf~Pl~~sl~---------k~~~ffG~e~~a~aii~ee~a~W~P~l~Wy~~rl~Gkk~ClWPGGsklW 341 (516)
T TIGR01861 275 PRLDI-DGFGFEPLADSLR---------KVALFFGIEDKAKAIIDEEVARWKPELDWYKERLKGKKVCLWPGGSKLW 341 (516)
T ss_pred CCEEE-CCCCCHHHHHHHH---------HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEECCCCCCHH
T ss_conf 72110-4667427899887---------7677614006788988754442175437899873687378717864034
No 127
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=30.05 E-value=20 Score=16.06 Aligned_cols=117 Identities=14% Similarity=0.192 Sum_probs=71.3
Q ss_pred EEEEEEEEEC----CCCEEEEEE--ECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEE---EECCCCC
Q ss_conf 1789899847----998699998--078999738985788031458611055643205667776017999---6157676
Q gi|254780364|r 14 CESVISVKHY----TDRLFRFCI--TRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSI---KVDKGFF 84 (224)
Q Consensus 14 ~~~V~~~~~~----T~~~~~l~l--~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~---~~~~g~~ 84 (224)
.+|.+.+-++ ||.|+.+-| .-|+...|-+|==+=|++-... .+--++-+|+. +++.+..- ..++|.-
T Consensus 38 aek~l~IMevCGgHeHtI~KYGl~~LLPeN~~~v~GPGCPVCv~P~~-~ID~a~~LA~~---~~~i~~tfGDM~RVPGs~ 113 (384)
T TIGR00075 38 AEKPLKIMEVCGGHEHTIMKYGLRDLLPENVELVHGPGCPVCVTPME-EIDEAIELAEK---PEVIITTFGDMLRVPGSG 113 (384)
T ss_pred CCCCCEEEEECCCCCCCEEEECHHHHCCCCEEEECCCCCCEEECCHH-HHHHHHHHHCC---CCEEEEECCCCCCCCCCC
T ss_conf 36740788513797331035263562876437734844881355737-89999998637---985998222111179885
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHHHH
Q ss_conf 5310000222221001688753356446768817999658680-8899999
Q gi|254780364|r 85 TTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGI-APFASMI 134 (224)
Q Consensus 85 s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGi-aP~~sil 134 (224)
.|.+.....|.++-++-.|+.-.-+-+..+.|++||+|-|-== ||.-++.
T Consensus 114 ~SL~~~ra~G~DvRIVYS~~dal~iA~~~Pdr~VVf~aiGFETTaP~TA~~ 164 (384)
T TIGR00075 114 GSLLQARAEGADVRIVYSPMDALKIAKENPDRKVVFFAIGFETTAPTTAIT 164 (384)
T ss_pred CCHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 447899755886799808789999998687994799961551261469999
No 128
>CHL00143 rpl3 ribosomal protein L3; Validated
Probab=28.75 E-value=41 Score=14.21 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=14.3
Q ss_pred EEEEEEECCCCC---------CCCCCCEEEECCCC
Q ss_conf 699998078999---------73898578803145
Q gi|254780364|r 27 LFRFCITRPKSF---------RFRSGEFVMLGLIV 52 (224)
Q Consensus 27 ~~~l~l~~p~~~---------~f~aGQ~~~l~~~~ 52 (224)
+.+|++..++.+ .|++|||+.+.---
T Consensus 80 l~Efrv~~~~~~~vG~~l~v~~F~~Gq~VdVtg~S 114 (207)
T CHL00143 80 LKEFRVESTEEFEVGQQLTVESFEVGQKVNVSGKS 114 (207)
T ss_pred EEEECCCCCCCCCCCCCCCHHHCCCCCEEEEEEEE
T ss_conf 89985577432468864020225799839996887
No 129
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=26.77 E-value=42 Score=14.16 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHH
Q ss_conf 688753356446768817999658680889999998653088633899994058645
Q gi|254780364|r 101 KKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAE 157 (224)
Q Consensus 101 ~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~d 157 (224)
+--+|.++.++....+++ ++++++|+.|-.-+.+. .....++.+++-|.++-.|
T Consensus 111 P~v~G~~~f~~~y~~nPl-v~~~~vG~v~~~~~~~~--~~~~~G~~iv~vGg~tgrd 164 (313)
T cd02203 111 PTVGGEVRFDPSYYGNPL-VNVGCVGIVPKDHIVKS--KAPGPGDLVVLVGGRTGRD 164 (313)
T ss_pred CEEEEEEEECCCCCCCCE-EEEEEEEEEEHHHHCCC--CCCCCCCEEEEEECCCCCC
T ss_conf 235579998665467843-78754775337770256--6899998899990786666
No 130
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=26.66 E-value=45 Score=13.98 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5335644676881799965868088999999865308863389
Q gi|254780364|r 105 GDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVI 147 (224)
Q Consensus 105 g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~ 147 (224)
|.+.+.+.....++||||+|+=+.=-+...+.|...+.+-+|+
T Consensus 548 GgYv~~d~~~~Pd~iliAtGSEV~La~~a~~~L~~~~~kvrVV 590 (675)
T TIGR00232 548 GGYVLKDSKGEPDIILIATGSEVQLAVEAAKKLAAENIKVRVV 590 (675)
T ss_pred CCCEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9807872587940899852736899999999998549857999
No 131
>KOG4576 consensus
Probab=25.96 E-value=44 Score=14.03 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=26.3
Q ss_pred CCCCCCEECCCCCCCCCC---CCCCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 222221001688753356---44676881799965868088999999
Q gi|254780364|r 92 QPGDTILLHKKSTGDLIL---DSLIPGNRLYLFSMGTGIAPFASMIR 135 (224)
Q Consensus 92 ~~gd~~~~~~~p~g~f~~---~~~~~~~~lvlIAgGtGiaP~~silr 135 (224)
.+.+.+++.- ..|-|-. .+..|+.+-+|+|+|..+-||.++-.
T Consensus 92 s~e~rIWVTy-g~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~ 137 (167)
T KOG4576 92 SPETRIWVTY-GSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYA 137 (167)
T ss_pred CCCCCEEEEE-CCCCEEHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 9764168983-586324788987089956143206887671899998
No 132
>pfam04489 DUF570 Protein of unknown function (DUF570). Protein of unknown function, found in herpesvirus and cytomegalovirus.
Probab=25.22 E-value=48 Score=13.82 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=6.6
Q ss_pred EECCCCCCCCCCCEEE
Q ss_conf 8078999738985788
Q gi|254780364|r 32 ITRPKSFRFRSGEFVM 47 (224)
Q Consensus 32 l~~p~~~~f~aGQ~~~ 47 (224)
+..|+.+..+-++|+-
T Consensus 91 i~~Pk~~~~~el~FLl 106 (422)
T pfam04489 91 ITTPKAFGIKELFFLL 106 (422)
T ss_pred EECCCCCCCCCEEEEE
T ss_conf 7522335778548999
No 133
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=25.08 E-value=48 Score=13.81 Aligned_cols=106 Identities=20% Similarity=0.286 Sum_probs=55.1
Q ss_pred CCEEEEEEEEEECC--CCEE----EEEEECCCCC---CCCCCCEEEECCCCCCC-CEEEEEEECCCCCCCCCEEEEEEEC
Q ss_conf 42117898998479--9869----9998078999---73898578803145861-1055643205667776017999615
Q gi|254780364|r 11 DVYCESVISVKHYT--DRLF----RFCITRPKSF---RFRSGEFVMLGLIVNGR-PIFRAYSIASPCRDDKLEFCSIKVD 80 (224)
Q Consensus 11 ~~~~~~V~~~~~~T--~~~~----~l~l~~p~~~---~f~aGQ~~~l~~~~~g~-~~~R~ySiaS~p~~~~~~~~i~~~~ 80 (224)
.+..++|++++.+- +++. +|. ...+++ ++.-|-|+--.-..... ...|||-.-. +-.-.-++++
T Consensus 198 eL~~a~vt~ieplG~gDRVCVDTcsLm-~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNA-----G~VhaYi~vP 271 (376)
T COG1465 198 ELVTATVTEIEPLGSGDRVCVDTCSLM-TRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRVNA-----GAVHAYIRVP 271 (376)
T ss_pred EEEEEEEEEEEECCCCCEEEEEEECCC-CCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEECC-----CCEEEEEECC
T ss_conf 788889989862687765898542113-2687148611367279996044568631147514215-----5326999947
Q ss_pred CCCCCCCCCCCCCCCCCEECCCCCCC--CCC-CCCCCCCCEEEEEC
Q ss_conf 76765310000222221001688753--356-44676881799965
Q gi|254780364|r 81 KGFFTTYLQNIQPGDTILLHKKSTGD--LIL-DSLIPGNRLYLFSM 123 (224)
Q Consensus 81 ~g~~s~~l~~~~~gd~~~~~~~p~g~--f~~-~~~~~~~~lvlIAg 123 (224)
|+-+.||..++.||.+.+...-+.. -.. .-..+.++++||-+
T Consensus 272 -g~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeA 316 (376)
T COG1465 272 -GGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEA 316 (376)
T ss_pred -CCCEEEHHHHCCCCEEEEEECCCCEEEEEEEEEEEECCCEEEEEE
T ss_conf -996477234069986999936895667888788860374589998
No 134
>PRK13201 ureB urease subunit beta; Reviewed
Probab=24.88 E-value=40 Score=14.31 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=3.9
Q ss_pred CCCCCCEEEEC
Q ss_conf 73898578803
Q gi|254780364|r 39 RFRSGEFVMLG 49 (224)
Q Consensus 39 ~f~aGQ~~~l~ 49 (224)
+|+|||--.+.
T Consensus 70 RFEPG~~k~V~ 80 (133)
T PRK13201 70 RFEPGDKKEVQ 80 (133)
T ss_pred EECCCCEEEEE
T ss_conf 53889916999
No 135
>COG0409 HypD Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.46 E-value=23 Score=15.72 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=49.6
Q ss_pred CCCEEEEEE--ECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEE-EEEEECCCCCCCCCCCCCCCCCCEEC
Q ss_conf 998699998--078999738985788031458611055643205667776017-99961576765310000222221001
Q gi|254780364|r 24 TDRLFRFCI--TRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEF-CSIKVDKGFFTTYLQNIQPGDTILLH 100 (224)
Q Consensus 24 T~~~~~l~l--~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~-~i~~~~~g~~s~~l~~~~~gd~~~~~ 100 (224)
|+.+++.-+ ..|+...|-.|-=+-+++...+. +..++-+++.+.---..| -..|++ |...|.+.....|.++-++
T Consensus 40 thtI~kyGl~slLPeNi~~i~GPGCPVCVtp~~~-id~aiela~~~~~i~~TfGDm~RVP-gs~~SL~~~ka~G~DVRiV 117 (364)
T COG0409 40 THTIMKYGLRSLLPENVEFIHGPGCPVCVTPMGR-IDTAIELASSKDVIFCTFGDMMRVP-GSPGSLLDAKAEGADVRIV 117 (364)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCEEEEEHHH-HHHHHHHHCCCCCEEEECCCEEECC-CCCCCHHHHHCCCCCEEEE
T ss_conf 0788874466658033378418999767468999-9999997278995897424436569-9975466664489637999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHH
Q ss_conf 688753356446768817999658680-88999
Q gi|254780364|r 101 KKSTGDLILDSLIPGNRLYLFSMGTGI-APFAS 132 (224)
Q Consensus 101 ~~p~g~f~~~~~~~~~~lvlIAgGtGi-aP~~s 132 (224)
-.|.....+-+..+.+++||+|-|--- ||.-+
T Consensus 118 YS~~dal~iA~enpdk~VVffaiGFETT~P~TA 150 (364)
T COG0409 118 YSPMDALKIAKENPDKKVVFFAIGFETTTPTTA 150 (364)
T ss_pred ECHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
T ss_conf 458999999864999726999575115897347
No 136
>COG3252 Methenyltetrahydromethanopterin cyclohydrolase [Coenzyme metabolism]
Probab=24.29 E-value=13 Score=17.23 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHH-HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 753356446768817999658680889999998-6530886338999940586454304888998875332
Q gi|254780364|r 104 TGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD-PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEI 173 (224)
Q Consensus 104 ~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~-~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~ 173 (224)
.|.|.+.+.. -++-.|--|+|+||+-.++-+ ...-++.++. ++||.|.---+-+.+|+.++.++.|-
T Consensus 186 ~g~~km~eig--yD~~~vksaaG~aPIAPv~~dd~~amG~TND~-v~ygG~v~~tv~~~de~~~~~~~vpS 253 (314)
T COG3252 186 TGIYKMLEIG--YDVNKVKSAAGIAPIAPVAGDDLKAMGRTNDA-VLYGGRVYLTVKSEDELEDLVKAVPS 253 (314)
T ss_pred HHHHHHHHHC--CCHHHEEECCCCCCCCCCCCCHHHHHCCCCCE-EEECCEEEEEEECCCHHHHHHHHCCC
T ss_conf 5678899853--68224021357666566568436654565642-78767799998413147999986642
No 137
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=24.04 E-value=39 Score=14.35 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=12.8
Q ss_pred CCCEEEEEEECCCC-------CCCCCCCEEE
Q ss_conf 99869999807899-------9738985788
Q gi|254780364|r 24 TDRLFRFCITRPKS-------FRFRSGEFVM 47 (224)
Q Consensus 24 T~~~~~l~l~~p~~-------~~f~aGQ~~~ 47 (224)
.+-++..+++.|-. ....||+++.
T Consensus 87 pDGTkLVtVh~PI~~~~~~~~~al~PGei~~ 117 (208)
T PRK13192 87 PDGTKLVTVHDPIRPAEGDLADALYPGEILP 117 (208)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCEEEC
T ss_conf 8998789945787888875111789983771
No 138
>pfam01924 HypD Hydrogenase formation hypA family. HypD is involved in hydrogenase formation. It contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into hypD resulted in R. leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas.
Probab=23.90 E-value=50 Score=13.67 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=59.7
Q ss_pred CCCEEEEEE--ECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEE----EEEECCCCCCCCCCCCCCCCCC
Q ss_conf 998699998--0789997389857880314586110556432056677760179----9961576765310000222221
Q gi|254780364|r 24 TDRLFRFCI--TRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFC----SIKVDKGFFTTYLQNIQPGDTI 97 (224)
Q Consensus 24 T~~~~~l~l--~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~----i~~~~~g~~s~~l~~~~~gd~~ 97 (224)
|..+++.-| .-|+..++.+|-=+=+++...+ .+-++..++.-+ +..+. ..|++ |..+|.......|.++
T Consensus 32 t~aI~r~Gir~LLP~~i~lisGPGCPVCVtp~~-~ID~ai~La~~~---~vii~TfGDmlRVP-Gs~~SL~~ara~GadV 106 (355)
T pfam01924 32 THAIFRYGIRSLLPENVELIHGPGCPVCVTPEG-RIDAAIELARRP---GVILCTFGDMLRVP-GSKGSLLDARAEGADV 106 (355)
T ss_pred HHHHHHHCHHHHCCCCCEEECCCCCCEEECCHH-HHHHHHHHHCCC---CEEEEECCCCEECC-CCCCCHHHHHHCCCCE
T ss_conf 799998357976868877920895970779489-999999985699---82999675324588-9889999998589978
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 001688753356446768817999658680-88999999865308863389999405
Q gi|254780364|r 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGI-APFASMIRDPETYKKFDEVIITHTCG 153 (224)
Q Consensus 98 ~~~~~p~g~f~~~~~~~~~~lvlIAgGtGi-aP~~silr~~~~~~~~~~i~l~~g~R 153 (224)
-++-.|.--..+-+..|.+.+||+|-|-=- ||..++.-..+.++...++.++-+.|
T Consensus 107 riVYSpldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~a~~~~~~Nf~vl~~hk 163 (355)
T pfam01924 107 RIVYSPLDALKIARENPDKEVVFFAIGFETTAPATAAAILQAKAEGLKNFSVLSNHV 163 (355)
T ss_pred EEEECHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999588999999997899859999436555657999999999980999589977024
No 139
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=23.60 E-value=42 Score=14.15 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=17.3
Q ss_pred EEEECCCCHHHHHHHH---HHHHHCCCCCEEEEEE
Q ss_conf 9996586808899999---9865308863389999
Q gi|254780364|r 119 YLFSMGTGIAPFASMI---RDPETYKKFDEVIITH 150 (224)
Q Consensus 119 vlIAgGtGiaP~~sil---r~~~~~~~~~~i~l~~ 150 (224)
++||.|+|+|-=.-+. ++++..+.- ++.+..
T Consensus 3 IlVaCGsGiaTSt~v~~ki~~~l~e~gi-~~~i~~ 36 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKENGI-DVKVEQ 36 (89)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCC-CEEEEE
T ss_conf 9999899703999999999999998699-159999
No 140
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=23.48 E-value=51 Score=13.62 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=44.8
Q ss_pred HCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 20734211789899847998699998078999738985788031458611055643205667776017999615767653
Q gi|254780364|r 7 ELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTT 86 (224)
Q Consensus 7 ~ip~~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~ 86 (224)
.+-.++-.++|++-..+..|+.+| |-.+.+.-...|+ .+.|+|+.+...+...-.| ..-..+..
T Consensus 34 ~L~~eL~rA~Vvd~~~ip~dvV~~------------gS~V~~~d~~~g~--~~~~~LV~p~ead~~~gkI--Sv~SPiG~ 97 (135)
T PRK05753 34 ALNAELDRAQVVPPAEMPADVVTM------------NSRVRFRDLSSGE--ERVVTLVYPADADISNGQV--SVLAPVGA 97 (135)
T ss_pred HHHHHHCCCEEECHHHCCCCEEEE------------CCEEEEEECCCCC--EEEEEEECHHHCCCCCCCC--CCCCHHHH
T ss_conf 999987487895822079998998------------9899999889998--9999994902649447920--10169999
Q ss_pred CCCCCCCCCCCEECCCCCCC
Q ss_conf 10000222221001688753
Q gi|254780364|r 87 YLQNIQPGDTILLHKKSTGD 106 (224)
Q Consensus 87 ~l~~~~~gd~~~~~~~p~g~ 106 (224)
.|..+.+||.+.+.. |.|.
T Consensus 98 ALlG~~~Gd~i~~~~-P~G~ 116 (135)
T PRK05753 98 ALLGLSVGQSIDWPL-PGGK 116 (135)
T ss_pred HHHCCCCCCEEEEEC-CCCC
T ss_conf 973899999999988-9997
No 141
>PRK13986 urease subunit alpha; Provisional
Probab=23.14 E-value=42 Score=14.18 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=13.6
Q ss_pred CCCEEEEEEECCCC--CCCCCCCEEE
Q ss_conf 99869999807899--9738985788
Q gi|254780364|r 24 TDRLFRFCITRPKS--FRFRSGEFVM 47 (224)
Q Consensus 24 T~~~~~l~l~~p~~--~~f~aGQ~~~ 47 (224)
.+-++..+++.|-. -...||+++.
T Consensus 88 pDGTkLVtvh~PI~~~~~~~PGe~~~ 113 (225)
T PRK13986 88 PDGTKLVTVHTPIEANGKLVPGELFL 113 (225)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCEEC
T ss_conf 89987999557878999989984436
No 142
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=22.97 E-value=53 Score=13.56 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=22.6
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCEEEEEEEC
Q ss_conf 9807899973898578803145861105564320
Q gi|254780364|r 31 CITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIA 64 (224)
Q Consensus 31 ~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySia 64 (224)
++..+++.-.++|+++.+.....|| ||.|+
T Consensus 3 ~l~~~~g~~l~~nD~VY~~~eppGE----PYyIg 32 (135)
T cd04710 3 SLVLKNGELLKVNDHIYMSSEPPGE----PYYIG 32 (135)
T ss_pred EEECCCCCEECCCCEEEEECCCCCC----CEEEE
T ss_conf 0684798695349999996799889----52775
No 143
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=22.43 E-value=54 Score=13.49 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=14.7
Q ss_pred CCCCEEEEECCCCHHHHH
Q ss_conf 688179996586808899
Q gi|254780364|r 114 PGNRLYLFSMGTGIAPFA 131 (224)
Q Consensus 114 ~~~~lvlIAgGtGiaP~~ 131 (224)
.+.+.+.||-|+++.|=.
T Consensus 51 ~~~d~viVA~gi~ls~eH 68 (161)
T COG5440 51 RGSDMVIVAIGIALSQEH 68 (161)
T ss_pred CCCCEEEEEEEECCCHHH
T ss_conf 999689999763329999
No 144
>PRK13198 ureB urease subunit beta; Reviewed
Probab=21.91 E-value=55 Score=13.45 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=5.5
Q ss_pred CCCCCCEEEE
Q ss_conf 7389857880
Q gi|254780364|r 39 RFRSGEFVML 48 (224)
Q Consensus 39 ~f~aGQ~~~l 48 (224)
.-.||+|+.=
T Consensus 28 ~~p~Gg~il~ 37 (158)
T PRK13198 28 NTPLGGLVLA 37 (158)
T ss_pred CCCCCCEEEC
T ss_conf 5898745778
No 145
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=21.38 E-value=57 Score=13.36 Aligned_cols=58 Identities=5% Similarity=0.000 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCH-----HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 86808899999986530886338999940586-----45430488899887533210124687599981057
Q gi|254780364|r 124 GTGIAPFASMIRDPETYKKFDEVIITHTCGRV-----AELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQ 190 (224)
Q Consensus 124 GtGiaP~~silr~~~~~~~~~~i~l~~g~R~~-----~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isr 190 (224)
-+|+|--+++|..+.++....--.|+-.+-.+ .-.-..++|..|.+++. +.|..++.-
T Consensus 142 KsGlav~la~L~~fa~~~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~---------l~~~~~IN~ 204 (553)
T COG4187 142 KSGLAVHLACLEEFAARTDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFD---------LEYTAAINL 204 (553)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHC---------CEEEEEECC
T ss_conf 200599999999986277877757998466054202128877788888777508---------537887314
No 146
>PRK13018 cell division protein FtsZ; Provisional
Probab=21.22 E-value=57 Score=13.34 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=17.2
Q ss_pred CCCCCEEEEE------CCCCHHHHHHH-HHH
Q ss_conf 7688179996------58680889999-998
Q gi|254780364|r 113 IPGNRLYLFS------MGTGIAPFASM-IRD 136 (224)
Q Consensus 113 ~~~~~lvlIA------gGtGiaP~~si-lr~ 136 (224)
..+.++|||+ +|||.||+.+= +|+
T Consensus 109 l~g~DmVFItAGmGGGTGTGAAPVIA~iAke 139 (387)
T PRK13018 109 LKGADLVFVTAGMGGGTGTGAAPVVAEIAKE 139 (387)
T ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 7589869999534785137778999999998
No 147
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=21.07 E-value=57 Score=13.32 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=21.2
Q ss_pred CCEEEEE-CCCCHHHH-----------HHHHHHHHHCC-CCCEEEEEEE
Q ss_conf 8179996-58680889-----------99999865308-8633899994
Q gi|254780364|r 116 NRLYLFS-MGTGIAPF-----------ASMIRDPETYK-KFDEVIITHT 151 (224)
Q Consensus 116 ~~lvlIA-gGtGiaP~-----------~silr~~~~~~-~~~~i~l~~g 151 (224)
..+.+++ ||+|.||+ +|+++.+.... ...+|.++|.
T Consensus 98 ~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~Ha 146 (226)
T COG2129 98 GGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTHA 146 (226)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 5808997556289988880015799999989988751367406999537
No 148
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; InterPro: IPR011985 This entry represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring ..
Probab=20.18 E-value=40 Score=14.25 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 8680889999998653088633899994058645430488899887
Q gi|254780364|r 124 GTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 124 GtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
=||-|--=|++.. .......++++=-|.|++-=+.-...|++-..
T Consensus 223 ftGeT~TG~~i~~-~gA~~LKr~s~ELGGKsP~iVFdDADLeRALD 267 (494)
T TIGR02299 223 FTGETATGSIIMR-NGADTLKRFSMELGGKSPVIVFDDADLERALD 267 (494)
T ss_pred EECCCHHHHHHHH-HHHHHCCEECCCCCCCCCEEEECCCCHHHHHH
T ss_conf 5246436789998-40112370011027998578842787446888
Done!