RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] (224 letters) >gnl|CDD|182844 PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional. Length = 248 Score = 99.4 bits (248), Expect = 7e-22 Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 11/207 (5%) Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCS 76 V V+++TD LF + P F +G+F LGL ++G + RAYS + + LEF Sbjct: 9 VTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYL 67 Query: 77 IKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 + V +G + L ++PGD + + ++ G +LD + L++ + GT I P+ S++++ Sbjct: 68 VTVPEGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQE 127 Query: 137 PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL-- 194 + ++F +++ H A+L Y + +M E+ Q KL+ V++E Sbjct: 128 GKDLERFKNLVLVHAARYAADLSY-LPLMQELEQR------YEGKLRIQTVVSRETAPGS 180 Query: 195 YKGRITNHILSGEFYRNMGLSPLNPDT 221 GR+ I SGE +GL P++ +T Sbjct: 181 LTGRVPALIESGELEAAVGL-PMDAET 206 >gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. Length = 352 Score = 50.2 bits (120), Expect = 4e-07 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 25/173 (14%) Query: 38 FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYL-QNIQPGDT 96 +RF G+ + L V+G + R+YSI S ++ K+ G F+T+ I+PGDT Sbjct: 31 YRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDT 90 Query: 97 ILLHKKSTGDLILDSLIP-GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRV 155 + + G D P + G+GI P S+ V+ Sbjct: 91 LEV-MAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAE---------TVLAAEPRSTF 140 Query: 156 AELQYG----IDVMHEISQDEI--LKDLIGQKLKFYRTVTQEDY---LYKGRI 199 L YG VM +E+ LKD Q+ +++E L GR+ Sbjct: 141 -TLVYGNRRTASVMF---AEELADLKDKHPQRFHLAHVLSREPREAPLLSGRL 189 >gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional. Length = 289 Score = 48.6 bits (116), Expect = 1e-06 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%) Query: 17 VISVKHYTDR--LFRFCITRP---KSFRFRSGEFVMLGLIVNGR-PIFRAYSI-ASPCRD 69 ++ V T+R LF P +SF F+ G+FV + + G PI SI +SP R Sbjct: 10 ILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPI----SICSSPTRK 65 Query: 70 DKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129 E C + G TT + ++ GD + + +D + G L L + G G+AP Sbjct: 66 GFFELCIRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEM-EGMDLLLIAGGLGMAP 122 Query: 130 FASMIRDP-ETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI-GQKLKFYRT 187 S++ + K+ + + + +Y D++ DE++KDL + +K ++ Sbjct: 123 LRSVLLYAMDNRWKYGNITLIYGA------KYYEDLLF---YDELIKDLAEAENVKIIQS 173 Query: 188 VTQED 192 VT++ Sbjct: 174 VTRDP 178 >gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional. Length = 312 Score = 43.9 bits (104), Expect = 4e-05 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%) Query: 34 RPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEF---CSIKVDKGFFTTYLQ 89 RP R+R+G+ ++L + R YS+AS P D LEF CS G F + Sbjct: 115 RP--LRYRAGQHLVLW---TAGGVARPYSLASLPGEDPFLEFHIDCS---RPGAFCDAAR 166 Query: 90 NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 +Q GD + L + G L D L+L + GTG+AP ++R+ Sbjct: 167 QLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILRE 213 >gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated. Length = 339 Score = 37.5 bits (88), Expect = 0.003 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 25/110 (22%) Query: 36 KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFCSIKVDKGFFTTYLQNIQPG 94 + ++ +G+++ ++ +G+ R+YSIA+ P LE + G FT ++ Sbjct: 128 ERLQYLAGQYIEF-ILKDGKR--RSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALKE 184 Query: 95 DTIL----------LHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134 IL L + S ++L + GTG AP S++ Sbjct: 185 RDILRIEGPLGTFFLREDSDKPIVL---LAS--------GTGFAPIKSIV 223 >gnl|CDD|177894 PLN02252, PLN02252, nitrate reductase [NADPH]. Length = 888 Score = 35.8 bits (83), Expect = 0.008 Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 29/139 (20%) Query: 26 RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKL---EFCSIKV-- 79 RLFRF + G+ V L +NG+ RAY+ S DD++ E IKV Sbjct: 650 RLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSS--DDEVGHFELV-IKVYF 706 Query: 80 --------DKGFFTTYLQNIQPGDTI-----LLHKKSTGD---LILDSLIPGNRLYLFSM 123 + G + YL ++ GDTI L H + G L+ +L + + Sbjct: 707 KNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAG 766 Query: 124 GTGIAPFASMI----RDPE 138 GTGI P +I RDPE Sbjct: 767 GTGITPMYQVIQAILRDPE 785 >gnl|CDD|178662 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional. Length = 367 Score = 35.4 bits (81), Expect = 0.014 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 25/116 (21%) Query: 40 FRSGEFVML---GLIVNGRP-IFRAYSIASPCRDD-----KLEFCSIK---------VDK 81 +R G+ + + G+ NG+P R YSIAS D + C + + K Sbjct: 123 YREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVK 182 Query: 82 GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGN---RLYLFSMGTGIAPFASMI 134 G + +L +++PG + K TG + + L+P + + + + GTGIAPF S + Sbjct: 183 GVCSNFLCDLKPGAEV----KITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 234 >gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed. Length = 250 Score = 33.3 bits (77), Expect = 0.053 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 13/86 (15%) Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVML----GLIVNGRPIFRAYSIASPCRDDKL 72 ++ K ++ + K F + G+FVM+ + RPI SI+ DK Sbjct: 9 IVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPI----SISDI---DKN 61 Query: 73 EFCSIKVDK-GFFTTYLQNIQPGDTI 97 E +I K G T L ++ GD + Sbjct: 62 E-ITILYRKVGEGTKKLSKLKEGDEL 86 >gnl|CDD|182647 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional. Length = 332 Score = 32.8 bits (75), Expect = 0.068 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 11/103 (10%) Query: 38 FRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFCSIKV---DKGFFTTYL-QNIQ 92 + +R+G++ ++ I N RAY+++S P EF ++ V D G + +L ++++ Sbjct: 35 YPYRAGQYALVS-IRNSAETLRAYTLSSTPGVS---EFITLTVRRIDDGVGSQWLTRDVK 90 Query: 93 PGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIR 135 GD + L + G+ D ++ L + G G+ P SM R Sbjct: 91 RGDYLWL-SDAMGEFTCDD-KAEDKYLLLAAGCGVTPIMSMRR 131 >gnl|CDD|178663 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional. Length = 307 Score = 31.6 bits (72), Expect = 0.17 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 18/95 (18%) Query: 59 RAYSIASPCRDDKLE-----FC---SIKVD----------KGFFTTYLQNIQPGDTILLH 100 R YSIAS D + C ++ D KG + +L + +PGD + + Sbjct: 82 RLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQIT 141 Query: 101 KKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIR 135 S ++L P + + GTGIAPF +R Sbjct: 142 GPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLR 176 >gnl|CDD|181209 PRK08051, fre, FMN reductase; Validated. Length = 232 Score = 30.6 bits (70), Expect = 0.30 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLE 73 V SV+ TD ++R + F FR+G+++M +V G R +SIAS P +E Sbjct: 7 VTSVEAITDTVYRVRLVPEAPFSFRAGQYLM---VVMGEKDKRPFSIASTPREKGFIE 61 >gnl|CDD|177944 PLN02309, PLN02309, 5'-adenylylsulfate reductase. Length = 457 Score = 30.9 bits (70), Expect = 0.30 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 21/88 (23%) Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVM 165 LI + + G +FS+ TG R +PETY+ FD V E YGI + Sbjct: 125 LIEYAHLTGRPFRVFSLDTG--------RLNPETYRLFDAV----------EKHYGIRIE 166 Query: 166 HEISQDEILKDLIGQK--LKFYRTVTQE 191 + ++ L+ K FY QE Sbjct: 167 YMFPDAVEVQALVRNKGLFSFYEDGHQE 194 >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional. Length = 1167 Score = 30.5 bits (69), Expect = 0.33 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%) Query: 80 DKGFFTTYLQNIQPGDTILLHKKSTGDLILD----------SLIPGNRLYLFSMGTGIAP 129 DKG ++ ++PGD++ + K+ G L ++ +L L + GTG+AP Sbjct: 988 DKGTLKEWISALRPGDSVEM--KACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAP 1045 Query: 130 FASMIR 135 +IR Sbjct: 1046 MLQIIR 1051 >gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed. Length = 195 Score = 30.3 bits (69), Expect = 0.39 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 18/67 (26%) Query: 134 IRDP--ETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI----------GQK 181 +RDP + Y V++ HT GR A+ Q+G + I++ LI G+K Sbjct: 24 VRDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVP------IVERLINKLMRTERNTGKK 77 Query: 182 LKFYRTV 188 K Y V Sbjct: 78 QKAYNIV 84 >gnl|CDD|180474 PRK06214, PRK06214, sulfite reductase; Provisional. Length = 530 Score = 28.5 bits (64), Expect = 1.3 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 18/92 (19%) Query: 59 RAYSIASPCRDDKLEFCSIKVD-----------KGFFTTYL-QNIQPGDTI--LLHKKST 104 R YSI+S + S+ VD G +T+L + + PG + + K Sbjct: 317 RLYSISSSPKATPGRV-SLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG 375 Query: 105 GDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 L D P + + GTGIAPF + + + Sbjct: 376 FALPAD---PNTPIIMVGPGTGIAPFRAFLHE 404 >gnl|CDD|107163 PHA02275, PHA02275, hypothetical protein. Length = 125 Score = 28.5 bits (63), Expect = 1.5 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%) Query: 144 DEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNH 202 + +I + C V L+ G+ M +I D +K + R V ++Y + ++H Sbjct: 63 SDGVIENICN-VEGLEDGLSKMKKIFDDSNF-----EKHYYNRVVDHDEYYWIDYGSHH 115 >gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1307 Score = 28.2 bits (63), Expect = 1.7 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 127 IAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE--ISQDEILKDL----IGQ 180 I FA+M+ D T + + + + G V E Y + VM E + +EI K++ Q Sbjct: 122 INAFAAMVHDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEGRAALEEINKEMGLAFDEQ 181 Query: 181 KLKFYRTVTQED 192 L +Y + ++D Sbjct: 182 DLDYYTRLFRDD 193 >gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. Length = 825 Score = 28.1 bits (63), Expect = 2.0 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%) Query: 161 GIDVMHEISQDEILKDLIGQK--LKFYRTVTQ-----EDYLY--KGRITNHILSGEFYRN 211 G D ++E+ + +L D G++ YR T E+ L K + H+L+ E R Sbjct: 302 GYDFLNEV--NGVLVDAAGEEPLTALYRNFTGRPQDIEETLRRAKRLVLRHLLASEIRRL 359 Query: 212 MGLSPLNPDTR 222 L + Sbjct: 360 ARLLARLAELD 370 >gnl|CDD|177929 PLN02292, PLN02292, ferric-chelate reductase. Length = 702 Score = 27.5 bits (61), Expect = 2.7 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 118 LYLFSMGTGIAPFASMIRD 136 L + S G+GI PF S+IRD Sbjct: 434 LVMVSGGSGITPFISIIRD 452 >gnl|CDD|149229 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. Length = 148 Score = 27.3 bits (61), Expect = 3.0 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 118 LYLFSMGTGIAPFASMIRD 136 L L + G+GI PF S++RD Sbjct: 4 LLLVAGGSGITPFISILRD 22 >gnl|CDD|147887 pfam05974, DUF892, Domain of unknown function (DUF892). This family consists of several hypothetical bacterial proteins of unknown function. Length = 159 Score = 27.1 bits (61), Expect = 3.4 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 16/53 (30%) Query: 149 THTC----GRVAELQYGIDVMHEISQDEILKD--LIGQKLKF-------YRTV 188 C G VAE Q +++ E + DE++KD LI Y T+ Sbjct: 67 GKKCDAMEGLVAEGQ---ELLEEDAGDEVVKDAALIAAAQAVEHYEIAAYGTL 116 >gnl|CDD|161873 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. Length = 463 Score = 27.3 bits (60), Expect = 3.5 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 19/87 (21%) Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH 166 LI + + G +FS+ TG +PETY+ FD V E QYGI + + Sbjct: 130 LIEYAHLTGRPFRVFSLDTGRL-------NPETYRFFDAV----------EKQYGIRIEY 172 Query: 167 EISQDEILKDLIGQK--LKFYRTVTQE 191 ++ L+ K FY QE Sbjct: 173 MFPDAVEVQALVRSKGLFSFYEDGHQE 199 >gnl|CDD|149225 pfam08021, FAD_binding_9, Siderophore-interacting FAD-binding domain. Length = 116 Score = 26.9 bits (60), Expect = 4.1 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 33/113 (29%) Query: 16 SVISVKHYTDRLFRFCITRPKSFRFRSGEF----------------VMLGLIVNG----- 54 +V+ V + + R T P F S V L +G Sbjct: 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPG 60 Query: 55 --RPIFRAYSIASPCRDDKLEFCSIKVD------KGFFTTYLQNIQPGDTILL 99 RPI R Y++ S + +D +G + + QPGDT+ + Sbjct: 61 EQRPIMRTYTVRSFDPAA----GELDIDFVLHGDEGPASRWAARAQPGDTLGI 109 >gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. Length = 340 Score = 26.7 bits (59), Expect = 4.9 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 16/48 (33%) Query: 127 IAPFASM-IRDPETYKKF---------------DEVIITHTCGRVAEL 158 PFAS + PETYK+F + + H CG + Sbjct: 200 ADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQPI 247 >gnl|CDD|182299 PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional. Length = 346 Score = 26.6 bits (59), Expect = 5.3 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 87 YLQNIQPGDTILLHKKSTGDLI-LDSLIPGNRLYLFSMGTGIAPFASMIRD 136 L+ + + KK+T +I LD+LI G++LY S + RD Sbjct: 185 LLKRMSDTE-----KKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRD 230 >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional. Length = 446 Score = 26.5 bits (58), Expect = 5.4 Identities = 12/38 (31%), Positives = 22/38 (57%) Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFD 144 +IL S +PG ++LFS+ +A S + + Y +F+ Sbjct: 95 MILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFE 132 >gnl|CDD|162552 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 454 Score = 26.3 bits (58), Expect = 5.9 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 8/36 (22%) Query: 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133 LL KS +L G R+ +FS G+G+A ASM Sbjct: 341 LLSSKSAQEL------AGKRVGMFSYGSGLA--ASM 368 >gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional. Length = 343 Score = 26.2 bits (58), Expect = 6.4 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 32 ITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS 65 +TRPK+ R F +L L NG RAY + + Sbjct: 67 LTRPKALRLPPKTFHVLFL-FNGE---RAYCLTA 96 >gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase. Length = 699 Score = 26.2 bits (57), Expect = 6.8 Identities = 12/21 (57%), Positives = 15/21 (71%) Query: 116 NRLYLFSMGTGIAPFASMIRD 136 N L L S G+GI PF S+IR+ Sbjct: 413 NSLILVSGGSGITPFISVIRE 433 >gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase. Length = 459 Score = 26.2 bits (58), Expect = 6.9 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 9/36 (25%) Query: 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133 L+H K S + G R+ +FS G+G+ A+M Sbjct: 339 LVHNKH-------SELAGKRILMFSYGSGLT--ATM 365 >gnl|CDD|178965 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional. Length = 571 Score = 25.9 bits (58), Expect = 7.5 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Query: 97 ILLHKKSTGDLILDSLIPGNRLYLFSMGTGI 127 LL+ +GDL L+ G LYL ++G G+ Sbjct: 314 ALLYIAQSGDL----LLGGLTLYLLALGMGL 340 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.143 0.428 Gapped Lambda K H 0.267 0.0716 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,733,380 Number of extensions: 236732 Number of successful extensions: 543 Number of sequences better than 10.0: 1 Number of HSP's gapped: 537 Number of HSP's successfully gapped: 39 Length of query: 224 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 134 Effective length of database: 4,049,753 Effective search space: 542666902 Effective search space used: 542666902 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.0 bits)