RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] (224 letters) >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257 Score = 134 bits (336), Expect = 2e-32 Identities = 95/213 (44%), Positives = 144/213 (67%) Query: 10 ADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD 69 +++Y E V+SV H+ D LF F TR RF++G+FVM+GL V+GRP+ RAYSIASP + Sbjct: 1 SNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE 60 Query: 70 DKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129 + LEF SIKV G T+ LQ+++ GD +++ +K TG L+ D L+PG LYL S GTG+AP Sbjct: 61 EHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAP 120 Query: 130 FASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVT 189 F S+I+DPETY+++++VI+ H V+EL Y + + + E D + +KL +Y VT Sbjct: 121 FLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVT 180 Query: 190 QEDYLYKGRITNHILSGEFYRNMGLSPLNPDTR 222 +E + +GR T+ + SG+ + ++GL P+NP Sbjct: 181 REPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDD 213 >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272 Score = 131 bits (329), Expect = 2e-31 Identities = 107/209 (51%), Positives = 159/209 (76%), Gaps = 1/209 (0%) Query: 15 ESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGL-IVNGRPIFRAYSIASPCRDDKLE 73 ++V SV+H+TD LF F +TRP++ RFRSGEFVM+GL NG+PI RAYSIASP D++LE Sbjct: 19 QTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELE 78 Query: 74 FCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133 F SIKV G T+ LQ+I+ G+ I+L K G L++D+L+PG RL+ + GTGIAPFAS+ Sbjct: 79 FYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASL 138 Query: 134 IRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY 193 +R+PE Y+KFDEVI+ H C VAEL+YG ++ + +D ++ +L+ KLK+Y T T+E++ Sbjct: 139 MREPEAYEKFDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEF 198 Query: 194 LYKGRITNHILSGEFYRNMGLSPLNPDTR 222 + GRIT+++ SG+ + ++G++P+NP+T Sbjct: 199 HHMGRITDNLASGKVFEDLGIAPMNPETD 227 >1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 3fpk_A* Length = 248 Score = 122 bits (307), Expect = 5e-29 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 10/209 (4%) Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCS 76 V V+++TD LF + P F +G+F LGL ++G + RAYS + + LEF Sbjct: 9 VTKVQNWTDALFSLTVHAP-VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYL 67 Query: 77 IKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 + V G + L ++PGD + + ++ G +LD + L++ + GT I P+ S++R Sbjct: 68 VTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRL 127 Query: 137 PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--YL 194 + +F +++ H A+L Y + + L+ KL+ V++E Sbjct: 128 GKDLDRFKNLVLVHAARYAADLSY-------LPLMQELEKRYEGKLRIQTVVSRETAAGS 180 Query: 195 YKGRITNHILSGEFYRNMGLSPLNPDTRI 223 GRI I SGE +GL + + Sbjct: 181 LTGRIPALIESGELESTIGLPMNKETSHV 209 >1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232 Score = 80.9 bits (199), Expect = 2e-16 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 18/193 (9%) Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFC 75 V SV+ TD ++R I +F FR+G+++M+ + + R +S+AS P +E Sbjct: 7 VTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDK---RPFSMASTPDEKGFIELH 63 Query: 76 SIKVDKGFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134 + + + I I++ G+ L + L + GTG + S++ Sbjct: 64 IGASEINLYAKAVMDRILKDHQIVVDIP-HGEAWLRDDEER-PMILIAGGTGFSYARSIL 121 Query: 135 RDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL 194 ++ I L + + +S L+ V Q + Sbjct: 122 LTALARNPNRDITIYWGGREEQHLYD-LCELEALSLK-------HPGLQVVPVVEQPEAG 173 Query: 195 ---YKGRITNHIL 204 G + +L Sbjct: 174 WRGRTGTVLTAVL 186 >1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396 Score = 80.5 bits (198), Expect = 3e-16 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 14/194 (7%) Query: 17 VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRP--IFRAYSIASPCRDDK 71 +++ + + F + +R G+++ + L G P R YS+ Sbjct: 157 IVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKG 216 Query: 72 LEFCSIKVDKGFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPF 130 + + G + +L + GD + L + + + + L S G G P Sbjct: 217 YRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVA--DDTPVTLISAGVGQTPM 274 Query: 131 ASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQ 190 +M+ +V H + +V E+ + L + Sbjct: 275 LAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEV------KELGQSLPRFTAHTWYRQPS 328 Query: 191 EDYLYKGRITNHIL 204 E KG+ + L Sbjct: 329 EADRAKGQFDSEGL 342 >1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A* Length = 314 Score = 80.3 bits (197), Expect = 3e-16 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 33/238 (13%) Query: 13 YCESVISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML---GLIVNGRP-IFRAYSI 63 Y + T + + +R G+ V + G NG+P R YSI Sbjct: 38 YVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSI 97 Query: 64 ASPCRDDKLEFCSI--------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDLIL 109 AS D + S+ + KG + +L +++PG + L G +L Sbjct: 98 ASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKL-TGPVGKEML 156 Query: 110 DSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 P + + GTGIAPF S + F E + +A L G+ + Sbjct: 157 MPKDPNATIIMLGTGTGIAPFRSFLWK-----MFFEKHDDYKFNGLAWLFLGVPTSSSLL 211 Query: 170 QDEILKDLIGQ---KLKFYRTVTQEDYLYKG-RITNHILSGEFYRNMGLSPLNPDTRI 223 E + + + + V++E KG ++ ++ + +T + Sbjct: 212 YKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYV 269 >1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262 Score = 80.5 bits (198), Expect = 3e-16 Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 16/189 (8%) Query: 17 VISVKHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFC 75 V+S + +F + G+F+ L + + R SI+S + K Sbjct: 10 VVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTI 69 Query: 76 SIKV-DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134 ++ D+ T L ++ G + + + + +++ + G G+ P + Sbjct: 70 LYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELA 129 Query: 135 RDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL 194 + E +++ ++ + + + Y Sbjct: 130 KQLEKTGCQMTILL---GFASENVKILENEFSNLKNVTL-----------KIATDDGSYG 175 Query: 195 YKGRITNHI 203 KG + + Sbjct: 176 TKGHVGMLM 184 >3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316 Score = 76.0 bits (186), Expect = 6e-15 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 22/201 (10%) Query: 22 HYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFC------ 75 + I + + + R YSI+S + L Sbjct: 68 NNQINKDHNIINTTNHTNHNNIALSHIK----KQRCARLYSISSSNNMENLSVAIKIHKY 123 Query: 76 ------SIKVDKGFFTTYLQNIQPGDTILLHK-KSTGDLILDSLIPGNRLYLFSMGTGIA 128 + G+ + +++N++ D I L +L D++ + GTGI+ Sbjct: 124 EQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183 Query: 129 PFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ-----KLK 183 P+ S ++ Y K + + YG+ I L+ + Sbjct: 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIH 243 Query: 184 FYRTVTQEDYLYKGRITNHIL 204 + + Q + + I Sbjct: 244 YVFSYKQNSDATSFYVQDEIY 264 >3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311 Score = 75.1 bits (184), Expect = 1e-14 Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 37/239 (15%) Query: 17 VISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML-----GLIVNGRPIF-RAYSIAS 65 ++SV+ I + + G+ + G P R YSIAS Sbjct: 33 IVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIAS 92 Query: 66 PCRDDKLEFCSI------------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDL 107 D + + G + +L N +PGD I L S + Sbjct: 93 TRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIM 152 Query: 108 ILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE 167 +L P + + GTG+APF +R + + G +A L G+ Sbjct: 153 LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPN-----YRFGGLAWLFLGVANSDS 207 Query: 168 ISQDEILKDLI---GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223 + DE + ++ + +++E G E Y + L+ I Sbjct: 208 LLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHI 266 >1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET: FAD; 1.70A {Zea mays} SCOP: b.43.4.2 c.25.1.1 Length = 316 Score = 72.5 bits (177), Expect = 7e-14 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 41/241 (17%) Query: 17 VISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML-----GLIVNGRPIF-RAYSIAS 65 ++SV+ I + + G+ + G P R YSIAS Sbjct: 38 IVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIAS 97 Query: 66 PCRDDKLEFCSI------------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDL 107 D + + G + +L N +PGD I L S + Sbjct: 98 TRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIM 157 Query: 108 ILDSLIPGNRLYLFSMGTGIAPFASMIRD-----PETYKKFDEVIITHTCGRVAELQYGI 162 +L P + + GTG+APF +R Y+ + L Y Sbjct: 158 LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDE 217 Query: 163 DVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTR 222 + LK ++ + +++E G E Y + L+ Sbjct: 218 EF------TSYLKQYPDN-FRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAH 270 Query: 223 I 223 I Sbjct: 271 I 271 >2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314 Score = 69.1 bits (168), Expect = 7e-13 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 37/227 (16%) Query: 26 RLFRFCITRPKSFRFRSGEFVML---GLIVNGRP--------IFRAYSIASPCRDDKLEF 74 I + + G+ + G + R YSIASP ++ Sbjct: 51 HRIVLAIDHSA-YPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKE 109 Query: 75 CSI---------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLY 119 +I KG + Y+ +++PGD + + S +L + + Sbjct: 110 DNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIM 169 Query: 120 LFSMGTGIAPFASMIRD---PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKD 176 + GTGIAPF M + + K + + + EL + + Sbjct: 170 FLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLK------GLESK 223 Query: 177 LIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223 KL + +++ GR+ E LN R Sbjct: 224 HKNFKLITAISREEKNSFDGGRMYISHRVRE-QAEAVKKILNGGGRF 269 >1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338 Score = 69.1 bits (168), Expect = 8e-13 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 15/192 (7%) Query: 17 VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73 + V++ +D F I F +G++V + + G R+YS +S + Sbjct: 113 LARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNV--TLPGTTETRSYSFSSQPGNRLTG 170 Query: 74 FCSIKVDKGFFTTY-LQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFAS 132 F V +G + Y + GD + + D + + + GTGIAPF S Sbjct: 171 FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDV---KRPVLMLAGGTGIAPFLS 227 Query: 133 MIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED 192 M++ E V + + +L + + + L + + + Sbjct: 228 MLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLD------ALQQKLPWFEYRTVVAHAESQ 281 Query: 193 YLYKGRITNHIL 204 + KG +T HI Sbjct: 282 HERKGYVTGHIE 293 >2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402 Score = 65.2 bits (158), Expect = 1e-11 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%) Query: 38 FRFRSGEFVMLGL---IVNGRPIF-RAYSIASPCRDDKLEFCSI---------------K 78 R+ G+ + + NG+P R YSIAS D + ++ + Sbjct: 154 LRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGE 213 Query: 79 VDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD-- 136 G +TYL N+ G + G +L + + + GTGIAPF + + Sbjct: 214 TVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMF 273 Query: 137 ---PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY 193 E YK + + A + Y + + + + Sbjct: 274 KEQHEDYKFKGKAWLIFGVPYTANILY----KDDFEKMAAENPDNFRLTYAISREQKTAD 329 Query: 194 LYKGRITNHIL 204 K + + + Sbjct: 330 GGKVYVQSRVS 340 >2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321 Score = 62.6 bits (151), Expect = 7e-11 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 12/138 (8%) Query: 17 VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKL 72 + S + ++ F +T P F +G + + + R R YS+ + ++ Sbjct: 13 IASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSR---RTYSLCNDSQERNRY 69 Query: 73 EFCSIKVDKGFFTT--YLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPF 130 + G + ++ + GD + + + L + G GI P Sbjct: 70 VIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDK---RAKSFILVAGGIGITPM 126 Query: 131 ASMIRDPETYKKFDEVII 148 SM R + Sbjct: 127 LSMARQLRAEGLRSFRLY 144 >2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270 Score = 61.9 bits (149), Expect = 1e-10 Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 22/210 (10%) Query: 17 VISVKHYTD--RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73 +++ K + RLFRF + P G+ + + + G+ RAY+ S + Sbjct: 17 LVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHF 76 Query: 74 FCSIKV----------DKGFFTTYLQNIQPGDTILL--------HKKSTGDLILDSLIPG 115 +KV + G T YL ++ G I + + +I Sbjct: 77 DLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNA 136 Query: 116 NRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCG-RVAELQYGIDVMHEISQDEIL 174 RL + G+GI P +I+ + D + R + D + + + Sbjct: 137 RRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPD 196 Query: 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 + + + + + G +T +L Sbjct: 197 RLKVWYVIDQVKRPEEGWKYSVGFVTEAVL 226 >1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275 Score = 61.5 bits (148), Expect = 1e-10 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 32/216 (14%) Query: 17 VISVKHYTD--RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73 +I + + R FRF + P+ G+ + L ++G + R Y+ S D Sbjct: 21 LIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFV 80 Query: 74 FCSIKVDK----------GFFTTYLQNIQPGDTILLHKKSTGDLILDS------------ 111 IKV G + YL+++Q GDTI + +G L+ Sbjct: 81 DLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEF-RGPSGLLVYQGKGKFAIRPDKKS 139 Query: 112 ---LIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI 168 + + + + GTGI P +IR V + + + E+ Sbjct: 140 NPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEEL 199 Query: 169 SQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 + + + +G + ++ Sbjct: 200 RNKHSARF---KLWYTLDRAPEAWDYGQGFVNEEMI 232 >2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304 Score = 58.4 bits (140), Expect = 1e-09 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 25/220 (11%) Query: 24 TDRLFRFCITRP-KSFRFRSGEFVML---GLIVNGRP-IFRAYSIASPCRDDKLEFCSIK 78 + + ++ G+ + + G+ NG+P R YSIAS D ++ +I Sbjct: 38 IGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTIS 97 Query: 79 V---------------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSM 123 + G +TYL +I+PG + + +L P + + + Sbjct: 98 LCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVG-KEMLLPDDPEANVIMLAG 156 Query: 124 GTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI---SQDEILKDLIGQ 180 GTGI P + + + + L +G+ I + E ++ Sbjct: 157 GTGITPMRTYLWRM-FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPD 215 Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPD 220 + +++E +G + + + Sbjct: 216 NFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQ 255 >1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidoreductase; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435 Score = 57.5 bits (138), Expect = 2e-09 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 27/185 (14%) Query: 39 RFRSGEFVMLGLIVNGRPI-FRAYSIASPCRDDKLEFCSI-------------KVDKGFF 84 F S + L+ + R YSI+S E V G Sbjct: 190 EFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVC 249 Query: 85 TTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD-----PET 139 +++L IQ D + + L P L GTGIAPF S + Sbjct: 250 SSWLNRIQADDVVPCFVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK 308 Query: 140 YKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRI 199 +++ C + + + G + Y ++E K + Sbjct: 309 GMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-------GVFRELYTAYSREPDRPKKYV 361 Query: 200 TNHIL 204 + + Sbjct: 362 QDVLQ 366 >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250 Score = 50.9 bits (120), Expect = 2e-07 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%) Query: 17 VISVKHYTDRLFRFCITRP------KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRD 69 V+ + + +F + + + +F G+F+ L + G + R+YS A+ P + Sbjct: 15 VVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLT--IPGTDVSRSYSPANLPNPE 72 Query: 70 DKLEFCSIKVDKGFFTTYLQNIQP 93 +LEF + +G F+ YL+N Sbjct: 73 GRLEFLIRVLPEGRFSDYLRNDAR 96 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 49.2 bits (116), Expect = 7e-07 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 21/99 (21%) Query: 127 IAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL--IGQKLKF 184 IA + ++PE+ +K+ E R+ EL VM + +++ KDL Q+ Sbjct: 74 IAQADRLTQEPESIRKWRE----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR--- 126 Query: 185 YRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223 Q + + K +I N I FY+ PD I Sbjct: 127 -----QSEQVEKNKINNRIADKAFYQ-------QPDADI 153 >1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 403 Score = 48.3 bits (114), Expect = 2e-06 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 16/200 (8%) Query: 17 VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYS--IASPCRDDK 71 + + +D + F + F G++ + + V + + ++ Sbjct: 159 IREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRT 218 Query: 72 LEFCSIKVDK-----GFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGT 125 + G+ + L ++ GD + L I + L S G Sbjct: 219 YRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVD--AKTPIVLISGGV 276 Query: 126 GIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI-SQDEILKDLIGQKLKF 184 G+ P SM++ V R + + D + E E L + Sbjct: 277 GLTPMVSMLKVALQAPPRQVVF--VHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPL 334 Query: 185 YRTVTQEDYLYKGRITNHIL 204 V DY Y G + + Sbjct: 335 PEDVQGRDYDYPGLVDVKQI 354 >2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} Length = 290 Score = 46.5 bits (109), Expect = 4e-06 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 58/238 (24%) Query: 17 VISVKHYTD--RLFRFCITRPKSFRFRSGEFVMLGL------------------------ 50 V+S K+ + + F + ++ F+SG + + + Sbjct: 14 VLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMD 73 Query: 51 -----IVNGRPIFRAYSIASPCRDDKLEFCSIK----------------VDKGFFTTYLQ 89 N RAYS+A+ + + +++ + G ++Y+ Sbjct: 74 AWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIF 133 Query: 90 NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIIT 149 +++PGD +++ I D+ + G G+AP + I K + Sbjct: 134 SLKPGDKVMMSGPYGDFHIQDT---DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSY 190 Query: 150 HTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY---LYKGRITNHIL 204 R ++ +E EI ++ K + Q + Y G I I Sbjct: 191 WYGARSKN-----EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIY 243 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 3e-05 Identities = 53/235 (22%), Positives = 79/235 (33%), Gaps = 78/235 (33%) Query: 5 SSELAADVYCESVISVKHYTD----RLFRFCITRP----------KSFRFRSGEFVML-G 49 +S+ A DV+ + H+ D + I P K R R M+ Sbjct: 1638 TSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694 Query: 50 LIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLIL 109 IV+G+ + I + + + + +KG + Q QP T L+ K + DL Sbjct: 1695 TIVDGK--LKTEKIFKEINEHSTSY-TFRSEKGLLSA-TQFTQPALT-LMEKAAFEDLKS 1749 Query: 110 DSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 LIP + A FA H+ G A L DVM S Sbjct: 1750 KGLIPAD-----------ATFAG-----------------HSLGEYAALASLADVMSIES 1781 Query: 170 QDEILKDLIGQKLKFYRTVTQE-----DYLYKGRITNHILSGEFYRNMGLSPLNP 219 E++ FYR +T + D L GR N G+ +NP Sbjct: 1782 LVEVV---------FYRGMTMQVAVPRDEL--GR-----------SNYGMIAINP 1814 Score = 39.9 bits (93), Expect = 5e-04 Identities = 43/224 (19%), Positives = 61/224 (27%), Gaps = 108/224 (48%) Query: 46 VMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTG 105 V + L+ NG + ++ P + S+ G L+ K +G Sbjct: 366 VEISLV-NGA---KNLVVSGPPQ-------SLY---GL-NLTLRKA---------KAPSG 401 Query: 106 DLILD-SLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIIT---HTCGRVAELQYG 161 LD S IP FS R + +F + + H+ Sbjct: 402 ---LDQSRIP------FSE-----------RKLKFSNRF--LPVASPFHS-------HLL 432 Query: 162 IDVMHEISQDEILKDLIGQKLKF---------YRTVTQEDYL--YKGRI----------- 199 + D I KDL+ + F Y T D L G I Sbjct: 433 VPA-----SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRL 486 Query: 200 -------TN----HIL---SGEFYRNMGLSPL---NPD---TRI 223 T HIL G GL L N D R+ Sbjct: 487 PVKWETTTQFKATHILDFGPG---GASGLGVLTHRNKDGTGVRV 527 Score = 37.2 bits (86), Expect = 0.003 Identities = 45/292 (15%), Positives = 73/292 (25%), Gaps = 145/292 (49%) Query: 33 TRPKSFRFRSGEFVML---GLIVNG---RPIFRAYSIASPCR----DDK----------- 71 TRP + S E V+L + F + P DD+ Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPTTPAELVGKF 64 Query: 72 LEFCSIKVD---------------KGFFTTYLQ--NI--------QPGDTILLHKKS--- 103 L + S V+ F YL+ +I Q DT L+ K Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124 Query: 104 --------TGD--------LILDSLIPGN-RLY-LFSMGTG------------------- 126 + ++ GN +L +F G G Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVL 183 Query: 127 IAPF--------ASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKD-- 176 + + +IR +K + G++++ + D Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKV--------FTQ------GLNILEWLENPSNTPDKD 229 Query: 177 ----------LIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMGLSP 216 LIG V Q L Y +T +L G +P Sbjct: 230 YLLSIPISCPLIG--------VIQ---LAHY--VVTAKLL--------GFTP 260 >1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374 Score = 41.0 bits (95), Expect = 2e-04 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 16/165 (9%) Query: 21 KHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVD 80 +HY + R + + + L R YSIAS + + E Sbjct: 127 QHYAATTPIVDMVRFSPAQLDAEALINL----LRPLTPRLYSIASSQAEVENEVHVTVGV 182 Query: 81 K-----------GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129 G + ++ + + + + L + P + + GTGIAP Sbjct: 183 VRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA-NPETPVIMIGPGTGIAP 241 Query: 130 FASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174 F + ++ + + + E ++ +L Sbjct: 242 FRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL 286 >1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688 Score = 40.2 bits (93), Expect = 4e-04 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 14/91 (15%) Query: 59 RAYSIASPCRDDKLEFCSI-------------KVDKGFFTTYLQNIQPGDTILLHKKSTG 105 R YSI+S E V G +++L IQ D + + Sbjct: 432 RYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP 491 Query: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 L P L GTGIAPF S + Sbjct: 492 SFHLPR-NPQVPCILVGPGTGIAPFRSFWQQ 521 >3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186 Score = 37.1 bits (85), Expect = 0.004 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 8/94 (8%) Query: 117 RLYLFSMGTGIAPFASMIR-------DPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 + L G G+ PFAS+++ + T K ++ C ++ D++ + Sbjct: 19 VVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLE 78 Query: 170 QDEILKDLIG-QKLKFYRTVTQEDYLYKGRITNH 202 ++ G Y T E + + Sbjct: 79 SQMQERNNAGFLSYNIYLTGWDESQANHFAVHHD 112 >2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel beta barrel, flexible hinge region; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539 Score = 35.9 bits (82), Expect = 0.008 Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 41/163 (25%) Query: 5 SSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIA 64 S + AAD + D L F +P L + R YS A Sbjct: 247 SKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLL---------LEHLPKLQPRPYSCA 297 Query: 65 SPCR--DDKLEFCSIKVD-----------KGFFTTYLQNIQP------------------ 93 S KL F V+ KG T +L + Sbjct: 298 SSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKAL 357 Query: 94 GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 I + ++T L P + + GTGIAPF ++ Sbjct: 358 APKISIFPRTTNSFHLPDD-PSIPIIMVGPGTGIAPFIGFLQH 399 >1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 PDB: 1ja0_A* 1j9z_A* 3es9_A* 1amo_A* 3fjo_A* 1b1c_A* Length = 622 Score = 35.9 bits (82), Expect = 0.008 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 19/106 (17%) Query: 47 MLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVD---------KGFFTTYLQNIQPGDTI 97 + L+ + + A + +S + + C++ V+ KG T++L+ +P Sbjct: 388 LCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGEN 447 Query: 98 -------LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136 + +KS L S P + + GTGIAPF I++ Sbjct: 448 GGRALVPMFVRKSQFRLPFKSTTP---VIMVGPGTGIAPFMGFIQE 490 >2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682 Score = 30.2 bits (67), Expect = 0.43 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 69 DDKLEFCSIKVDKGFFTTYLQNIQPGDTILLH-KKSTGDLILDSLIPGNRLYLFSMGTGI 127 + + + + + + + +H ++S L + P + + GTG+ Sbjct: 480 QNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTP---VIMIGPGTGV 536 Query: 128 APFASMIRDPETYKK 142 APF IR+ + + Sbjct: 537 APFRGFIRERVAFLE 551 >1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Length = 1024 Score = 28.0 bits (61), Expect = 1.9 Identities = 10/48 (20%), Positives = 17/48 (35%) Query: 11 DVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIF 58 +V S + Y + + FR+ V +VNGR + Sbjct: 282 NVEPWSAEVPRLYEASVSSAAESISVRLGFRTVRIVGDQFLVNGRRVV 329 >1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1 Length = 211 Score = 27.2 bits (60), Expect = 3.5 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 7/108 (6%) Query: 104 TGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGID 163 D L N LYL + G F + + + + + + YG Sbjct: 45 AADYKDFHLTADNPLYLLCVLKGSFIFTADL-----ARFLADEGVPVKVEFICASSYGSG 99 Query: 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRN 211 E S + + ++ + ED + +++ + Sbjct: 100 --VETSGQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKK 145 >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans} Length = 481 Score = 26.5 bits (57), Expect = 4.7 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 154 RVAELQYGIDVMHEISQDEILKDLIGQKLKF 184 ++AE ++E DEI+ G+ L F Sbjct: 46 KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF 76 >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A* Length = 467 Score = 26.5 bits (57), Expect = 4.7 Identities = 6/31 (19%), Positives = 13/31 (41%) Query: 154 RVAELQYGIDVMHEISQDEILKDLIGQKLKF 184 R+ ++E E+++ G+ L F Sbjct: 42 RINAWNSPTLPIYEPGLKEVVESCRGKNLFF 72 >1x87_A Urocanase protein; structural genomics, protein structure initiative, MCSG, PSI, midwest center for structural genomics; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1 Length = 551 Score = 26.7 bits (59), Expect = 4.8 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 27/98 (27%) Query: 120 LFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI- 178 LF G G + ++ DPE K DEVI + E S +E L I Sbjct: 348 LFCEGKGPFRWVALSGDPEDIYKTDEVI-----------------LREFSDNERLCHWIR 390 Query: 179 --GQKLKFYRTVTQEDYL-YKGRIT------NHILSGE 207 +++KF + +L Y R + + GE Sbjct: 391 MAQKRIKFQGLPARICWLGYGERAKFGKIINDMVAKGE 428 >2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis} Length = 552 Score = 26.7 bits (59), Expect = 5.0 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 120 LFSMGTGIAPFASMIRDPETYKKFDEVI 147 LF G G +A++ DP + D ++ Sbjct: 349 LFCEGKGPFRWAALSGDPADIYRTDALL 376 >2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Length = 134 Score = 25.9 bits (57), Expect = 7.9 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 9/59 (15%) Query: 66 PCRDDKLEFCSIKVDKGFFTTYLQNIQPGD--------TILLHKKSTGDLILDSLIPGN 116 DD+ + + + T LL ++ D+L Sbjct: 56 ELIDDERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLARQGD-LAGADALTENT 113 >1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Length = 240 Score = 25.5 bits (55), Expect = 9.7 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 7/54 (12%) Query: 88 LQNIQPGDTILLH--KKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPET 139 ++ PG LLH + + LD I L G ++ + E Sbjct: 187 IKQAHPGAIYLLHTVSRDNAE-ALDDAIT----DLKKQGYTFKSIDDLMFEKEM 235 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.143 0.428 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,987,207 Number of extensions: 91091 Number of successful extensions: 371 Number of sequences better than 10.0: 1 Number of HSP's gapped: 340 Number of HSP's successfully gapped: 41 Length of query: 224 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 135 Effective length of database: 3,535,514 Effective search space: 477294390 Effective search space used: 477294390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.7 bits)