RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (224 letters)



>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
           aeruginosa} PDB: 3crz_A* 1a8p_A*
          Length = 257

 Score =  134 bits (336), Expect = 2e-32
 Identities = 95/213 (44%), Positives = 144/213 (67%)

Query: 10  ADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD 69
           +++Y E V+SV H+ D LF F  TR    RF++G+FVM+GL V+GRP+ RAYSIASP  +
Sbjct: 1   SNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE 60

Query: 70  DKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129
           + LEF SIKV  G  T+ LQ+++ GD +++ +K TG L+ D L+PG  LYL S GTG+AP
Sbjct: 61  EHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAP 120

Query: 130 FASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVT 189
           F S+I+DPETY+++++VI+ H    V+EL Y   +   + + E   D + +KL +Y  VT
Sbjct: 121 FLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVT 180

Query: 190 QEDYLYKGRITNHILSGEFYRNMGLSPLNPDTR 222
           +E +  +GR T+ + SG+ + ++GL P+NP   
Sbjct: 181 REPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDD 213


>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
           reductase, flavoproteins, electron transfer,
           oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
           capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
          Length = 272

 Score =  131 bits (329), Expect = 2e-31
 Identities = 107/209 (51%), Positives = 159/209 (76%), Gaps = 1/209 (0%)

Query: 15  ESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGL-IVNGRPIFRAYSIASPCRDDKLE 73
           ++V SV+H+TD LF F +TRP++ RFRSGEFVM+GL   NG+PI RAYSIASP  D++LE
Sbjct: 19  QTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELE 78

Query: 74  FCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133
           F SIKV  G  T+ LQ+I+ G+ I+L  K  G L++D+L+PG RL+  + GTGIAPFAS+
Sbjct: 79  FYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASL 138

Query: 134 IRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY 193
           +R+PE Y+KFDEVI+ H C  VAEL+YG  ++  + +D ++ +L+  KLK+Y T T+E++
Sbjct: 139 MREPEAYEKFDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEF 198

Query: 194 LYKGRITNHILSGEFYRNMGLSPLNPDTR 222
            + GRIT+++ SG+ + ++G++P+NP+T 
Sbjct: 199 HHMGRITDNLASGKVFEDLGIAPMNPETD 227


>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
           flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
           b.43.4.2 c.25.1.1 PDB: 3fpk_A*
          Length = 248

 Score =  122 bits (307), Expect = 5e-29
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 10/209 (4%)

Query: 17  VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCS 76
           V  V+++TD LF   +  P    F +G+F  LGL ++G  + RAYS  +   +  LEF  
Sbjct: 9   VTKVQNWTDALFSLTVHAP-VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYL 67

Query: 77  IKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
           + V  G  +  L  ++PGD + +  ++ G  +LD +     L++ + GT I P+ S++R 
Sbjct: 68  VTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRL 127

Query: 137 PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--YL 194
            +   +F  +++ H     A+L Y       +   + L+     KL+    V++E     
Sbjct: 128 GKDLDRFKNLVLVHAARYAADLSY-------LPLMQELEKRYEGKLRIQTVVSRETAAGS 180

Query: 195 YKGRITNHILSGEFYRNMGLSPLNPDTRI 223
             GRI   I SGE    +GL      + +
Sbjct: 181 LTGRIPALIESGELESTIGLPMNKETSHV 209


>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
           superfamily, oxidoreductase; 2.20A {Escherichia coli}
           SCOP: b.43.4.2 c.25.1.1
          Length = 232

 Score = 80.9 bits (199), Expect = 2e-16
 Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 18/193 (9%)

Query: 17  VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFC 75
           V SV+  TD ++R  I    +F FR+G+++M+ +    +   R +S+AS P     +E  
Sbjct: 7   VTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDK---RPFSMASTPDEKGFIELH 63

Query: 76  SIKVDKGFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134
               +   +   +   I     I++     G+  L        + L + GTG +   S++
Sbjct: 64  IGASEINLYAKAVMDRILKDHQIVVDIP-HGEAWLRDDEER-PMILIAGGTGFSYARSIL 121

Query: 135 RDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL 194
                     ++ I         L   +  +  +S            L+    V Q +  
Sbjct: 122 LTALARNPNRDITIYWGGREEQHLYD-LCELEALSLK-------HPGLQVVPVVEQPEAG 173

Query: 195 ---YKGRITNHIL 204
                G +   +L
Sbjct: 174 WRGRTGTVLTAVL 186


>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
           iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
           SCOP: a.1.1.2 b.43.4.2 c.25.1.5
          Length = 396

 Score = 80.5 bits (198), Expect = 3e-16
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 14/194 (7%)

Query: 17  VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRP--IFRAYSIASPCRDDK 71
           +++    +  +  F +          +R G+++ + L   G P    R YS+        
Sbjct: 157 IVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKG 216

Query: 72  LEFCSIKVDKGFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPF 130
                 + + G  + +L  +   GD + L   +    +  +      + L S G G  P 
Sbjct: 217 YRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVA--DDTPVTLISAGVGQTPM 274

Query: 131 ASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQ 190
            +M+          +V   H         +  +V       E+ + L       +     
Sbjct: 275 LAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEV------KELGQSLPRFTAHTWYRQPS 328

Query: 191 EDYLYKGRITNHIL 204
           E    KG+  +  L
Sbjct: 329 EADRAKGQFDSEGL 342


>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
           (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
           oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
           1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
           1qfy_A* 1gaw_A* 1gaq_A* 1sm4_A*
          Length = 314

 Score = 80.3 bits (197), Expect = 3e-16
 Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 33/238 (13%)

Query: 13  YCESVISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML---GLIVNGRP-IFRAYSI 63
           Y    +     T        +    +      +R G+ V +   G   NG+P   R YSI
Sbjct: 38  YVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSI 97

Query: 64  ASPCRDDKLEFCSI--------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDLIL 109
           AS    D  +  S+              +  KG  + +L +++PG  + L     G  +L
Sbjct: 98  ASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKL-TGPVGKEML 156

Query: 110 DSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169
               P   + +   GTGIAPF S +        F E    +    +A L  G+     + 
Sbjct: 157 MPKDPNATIIMLGTGTGIAPFRSFLWK-----MFFEKHDDYKFNGLAWLFLGVPTSSSLL 211

Query: 170 QDEILKDLIGQ---KLKFYRTVTQEDYLYKG-RITNHILSGEFYRNMGLSPLNPDTRI 223
             E  + +  +     +    V++E    KG ++       ++   +       +T +
Sbjct: 212 YKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYV 269


>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
           alpha-beta barrel, beta sandwich, FAD domain, alpha/beta
           NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
           SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
          Length = 262

 Score = 80.5 bits (198), Expect = 3e-16
 Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 16/189 (8%)

Query: 17  VISVKHYTDRLFRFCITRPK-SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFC 75
           V+S +     +F   +           G+F+ L +      + R  SI+S  +  K    
Sbjct: 10  VVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTI 69

Query: 76  SIKV-DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134
             ++ D+   T  L  ++ G  + +         +  +   +++ +   G G+ P   + 
Sbjct: 70  LYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELA 129

Query: 135 RDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL 194
           +  E       +++         ++   +    +    +                   Y 
Sbjct: 130 KQLEKTGCQMTILL---GFASENVKILENEFSNLKNVTL-----------KIATDDGSYG 175

Query: 195 YKGRITNHI 203
            KG +   +
Sbjct: 176 TKGHVGMLM 184


>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
           {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
           3jqp_A*
          Length = 316

 Score = 76.0 bits (186), Expect = 6e-15
 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 22/201 (10%)

Query: 22  HYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFC------ 75
           +         I         +     +      +   R YSI+S    + L         
Sbjct: 68  NNQINKDHNIINTTNHTNHNNIALSHIK----KQRCARLYSISSSNNMENLSVAIKIHKY 123

Query: 76  ------SIKVDKGFFTTYLQNIQPGDTILLHK-KSTGDLILDSLIPGNRLYLFSMGTGIA 128
                     + G+ + +++N++  D I L       +L  D++         + GTGI+
Sbjct: 124 EQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGYFNLPNDAIQKNTNFIFIATGTGIS 183

Query: 129 PFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ-----KLK 183
           P+ S ++    Y K +             + YG+     I     L+           + 
Sbjct: 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNINIH 243

Query: 184 FYRTVTQEDYLYKGRITNHIL 204
           +  +  Q        + + I 
Sbjct: 244 YVFSYKQNSDATSFYVQDEIY 264


>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
           FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
           3lvb_A* 1jb9_A*
          Length = 311

 Score = 75.1 bits (184), Expect = 1e-14
 Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 37/239 (15%)

Query: 17  VISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML-----GLIVNGRPIF-RAYSIAS 65
           ++SV+               I    +  +  G+   +          G P   R YSIAS
Sbjct: 33  IVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIAS 92

Query: 66  PCRDDKLEFCSI------------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDL 107
               D  +  +                       G  + +L N +PGD I L   S   +
Sbjct: 93  TRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIM 152

Query: 108 ILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE 167
           +L    P     + + GTG+APF   +R        +     +  G +A L  G+     
Sbjct: 153 LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPN-----YRFGGLAWLFLGVANSDS 207

Query: 168 ISQDEILKDLI---GQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223
           +  DE     +       ++ + +++E     G         E Y +     L+    I
Sbjct: 208 LLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHI 266


>1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET:
           FAD; 1.70A {Zea mays} SCOP: b.43.4.2 c.25.1.1
          Length = 316

 Score = 72.5 bits (177), Expect = 7e-14
 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 41/241 (17%)

Query: 17  VISVKHYTD-----RLFRFCITRPKSFRFRSGEFVML-----GLIVNGRPIF-RAYSIAS 65
           ++SV+               I    +  +  G+   +          G P   R YSIAS
Sbjct: 38  IVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIAS 97

Query: 66  PCRDDKLEFCSI------------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDL 107
               D  +  +                       G  + +L N +PGD I L   S   +
Sbjct: 98  TRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIM 157

Query: 108 ILDSLIPGNRLYLFSMGTGIAPFASMIRD-----PETYKKFDEVIITHTCGRVAELQYGI 162
           +L    P     + + GTG+APF   +R         Y+      +         L Y  
Sbjct: 158 LLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDE 217

Query: 163 DVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTR 222
           +          LK       ++ + +++E     G         E Y +     L+    
Sbjct: 218 EF------TSYLKQYPDN-FRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAH 270

Query: 223 I 223
           I
Sbjct: 271 I 271


>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
           {Leptospira interrogans} PDB: 2rc6_A*
          Length = 314

 Score = 69.1 bits (168), Expect = 7e-13
 Identities = 38/227 (16%), Positives = 69/227 (30%), Gaps = 37/227 (16%)

Query: 26  RLFRFCITRPKSFRFRSGEFVML---GLIVNGRP--------IFRAYSIASPCRDDKLEF 74
                 I     + +  G+   +   G     +           R YSIASP     ++ 
Sbjct: 51  HRIVLAIDHSA-YPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKE 109

Query: 75  CSI---------------KVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLY 119
            +I                  KG  + Y+ +++PGD + +   S    +L +      + 
Sbjct: 110 DNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIM 169

Query: 120 LFSMGTGIAPFASMIRD---PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKD 176
             + GTGIAPF  M  +    +  K    + + +      EL     +        +   
Sbjct: 170 FLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLK------GLESK 223

Query: 177 LIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223
               KL    +  +++    GR+       E         LN   R 
Sbjct: 224 HKNFKLITAISREEKNSFDGGRMYISHRVRE-QAEAVKKILNGGGRF 269


>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
           ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
           1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
           d.15.4.2
          Length = 338

 Score = 69.1 bits (168), Expect = 8e-13
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 15/192 (7%)

Query: 17  VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73
           +  V++ +D    F I          F +G++V +   + G    R+YS +S   +    
Sbjct: 113 LARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNV--TLPGTTETRSYSFSSQPGNRLTG 170

Query: 74  FCSIKVDKGFFTTY-LQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFAS 132
           F    V +G  + Y     + GD +          + D       + + + GTGIAPF S
Sbjct: 171 FVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGSFYLRDV---KRPVLMLAGGTGIAPFLS 227

Query: 133 MIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED 192
           M++  E       V +     +  +L     +        + + L   + +      +  
Sbjct: 228 MLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLD------ALQQKLPWFEYRTVVAHAESQ 281

Query: 193 YLYKGRITNHIL 204
           +  KG +T HI 
Sbjct: 282 HERKGYVTGHIE 293


>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
           HET: FAD; 2.50A {Synechococcus SP}
          Length = 402

 Score = 65.2 bits (158), Expect = 1e-11
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 38  FRFRSGEFVMLGL---IVNGRPIF-RAYSIASPCRDDKLEFCSI---------------K 78
            R+  G+ + +       NG+P   R YSIAS    D  +  ++               +
Sbjct: 154 LRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGE 213

Query: 79  VDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD-- 136
              G  +TYL N+  G   +      G  +L        + + + GTGIAPF + +    
Sbjct: 214 TVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMF 273

Query: 137 ---PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY 193
               E YK   +  +       A + Y      +  +         +         +   
Sbjct: 274 KEQHEDYKFKGKAWLIFGVPYTANILY----KDDFEKMAAENPDNFRLTYAISREQKTAD 329

Query: 194 LYKGRITNHIL 204
             K  + + + 
Sbjct: 330 GGKVYVQSRVS 340


>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
           cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
          Length = 321

 Score = 62.6 bits (151), Expect = 7e-11
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 12/138 (8%)

Query: 17  VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKL 72
           + S +     ++ F +T P       F +G  + + +    R   R YS+ +     ++ 
Sbjct: 13  IASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSR---RTYSLCNDSQERNRY 69

Query: 73  EFCSIKVDKGFFTT--YLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPF 130
                +   G   +  ++ +   GD + +        +           L + G GI P 
Sbjct: 70  VIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDK---RAKSFILVAGGIGITPM 126

Query: 131 ASMIRDPETYKKFDEVII 148
            SM R           + 
Sbjct: 127 LSMARQLRAEGLRSFRLY 144


>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
           oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
           {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
          Length = 270

 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 22/210 (10%)

Query: 17  VISVKHYTD--RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73
           +++ K  +   RLFRF +  P        G+ + +   + G+   RAY+  S   +    
Sbjct: 17  LVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHF 76

Query: 74  FCSIKV----------DKGFFTTYLQNIQPGDTILL--------HKKSTGDLILDSLIPG 115
              +KV          + G  T YL ++  G  I +        +      +I       
Sbjct: 77  DLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNA 136

Query: 116 NRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCG-RVAELQYGIDVMHEISQDEIL 174
            RL +   G+GI P   +I+     +  D   +      R  +     D +   + +   
Sbjct: 137 RRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPD 196

Query: 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204
           +  +   +   +   +      G +T  +L
Sbjct: 197 RLKVWYVIDQVKRPEEGWKYSVGFVTEAVL 226


>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
           FAD-binding domain, NADH-binding domain, oxidoreductase;
           HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
           PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
          Length = 275

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 32/216 (14%)

Query: 17  VISVKHYTD--RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLE 73
           +I  +  +   R FRF +  P+       G+ + L   ++G  + R Y+  S   D    
Sbjct: 21  LIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFV 80

Query: 74  FCSIKVDK----------GFFTTYLQNIQPGDTILLHKKSTGDLILDS------------ 111
              IKV            G  + YL+++Q GDTI   +  +G L+               
Sbjct: 81  DLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEF-RGPSGLLVYQGKGKFAIRPDKKS 139

Query: 112 ---LIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI 168
              +     + + + GTGI P   +IR          V       +  +       + E+
Sbjct: 140 NPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEEL 199

Query: 169 SQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204
                 +    +         +     +G +   ++
Sbjct: 200 RNKHSARF---KLWYTLDRAPEAWDYGQGFVNEEMI 232


>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
           reductase reductase, phycobilisome, thylakoid; HET: FAD;
           1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
           2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
           1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
           1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
          Length = 304

 Score = 58.4 bits (140), Expect = 1e-09
 Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 25/220 (11%)

Query: 24  TDRLFRFCITRP-KSFRFRSGEFVML---GLIVNGRP-IFRAYSIASPCRDDKLEFCSIK 78
              +          + ++  G+ + +   G+  NG+P   R YSIAS    D ++  +I 
Sbjct: 38  IGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTIS 97

Query: 79  V---------------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSM 123
           +                 G  +TYL +I+PG  + +        +L    P   + + + 
Sbjct: 98  LCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVG-KEMLLPDDPEANVIMLAG 156

Query: 124 GTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI---SQDEILKDLIGQ 180
           GTGI P  + +               +     + L +G+     I    + E ++     
Sbjct: 157 GTGITPMRTYLWRM-FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPD 215

Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPD 220
             +    +++E    +G           + +     +   
Sbjct: 216 NFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQ 255


>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
           FAD, NADP+, oxidoreductase; HET: FAD NAP; 1.90A {Rattus
           norvegicus} SCOP: b.43.4.1 c.25.1.4
          Length = 435

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 27/185 (14%)

Query: 39  RFRSGEFVMLGLIVNGRPI-FRAYSIASPCRDDKLEFCSI-------------KVDKGFF 84
            F S +     L+     +  R YSI+S       E                  V  G  
Sbjct: 190 EFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVC 249

Query: 85  TTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD-----PET 139
           +++L  IQ  D +    +      L    P     L   GTGIAPF S  +         
Sbjct: 250 SSWLNRIQADDVVPCFVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK 308

Query: 140 YKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRI 199
                 +++   C +        +   +           G   + Y   ++E    K  +
Sbjct: 309 GMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-------GVFRELYTAYSREPDRPKKYV 361

Query: 200 TNHIL 204
            + + 
Sbjct: 362 QDVLQ 366


>1tvc_A Methane monooxygenase component C, methane monooxygenase;
          FAD-binding, NADH-binding, oxidoreductase; HET: FDA;
          NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
          Length = 250

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 17 VISVKHYTDRLFRFCITRP------KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRD 69
          V+ +   +    +F + +       +  +F  G+F+ L   + G  + R+YS A+ P  +
Sbjct: 15 VVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLT--IPGTDVSRSYSPANLPNPE 72

Query: 70 DKLEFCSIKVDKGFFTTYLQNIQP 93
           +LEF    + +G F+ YL+N   
Sbjct: 73 GRLEFLIRVLPEGRFSDYLRNDAR 96


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 49.2 bits (116), Expect = 7e-07
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 21/99 (21%)

Query: 127 IAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDL--IGQKLKF 184
           IA    + ++PE+ +K+ E        R+ EL     VM +  +++  KDL    Q+   
Sbjct: 74  IAQADRLTQEPESIRKWRE----EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR--- 126

Query: 185 YRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRI 223
                Q + + K +I N I    FY+        PD  I
Sbjct: 127 -----QSEQVEKNKINNRIADKAFYQ-------QPDADI 153


>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
           sheet, helix- flanked five-stranded parallel beta sheet,
           lipid binding protein; HET: HEM FAD DGG; 1.75A
           {Ralstonia eutropha} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
          Length = 403

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 16/200 (8%)

Query: 17  VISVKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLIVNGRPIFRAYS--IASPCRDDK 71
           +   +  +D +  F +          F  G++  + + V    + +     ++       
Sbjct: 159 IREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRT 218

Query: 72  LEFCSIKVDK-----GFFTTYL-QNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGT 125
                 +        G+ +  L  ++  GD + L        I         + L S G 
Sbjct: 219 YRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFHIDVD--AKTPIVLISGGV 276

Query: 126 GIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEI-SQDEILKDLIGQKLKF 184
           G+ P  SM++          V       R + +    D + E     E L   +      
Sbjct: 277 GLTPMVSMLKVALQAPPRQVVF--VHGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPL 334

Query: 185 YRTVTQEDYLYKGRITNHIL 204
              V   DY Y G +    +
Sbjct: 335 PEDVQGRDYDYPGLVDVKQI 354


>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit;
           alpha-beta-alpha sandwich, structural genomics, PSI-2;
           HET: FAD; 2.95A {Porphyromonas gingivalis W83}
          Length = 290

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 58/238 (24%)

Query: 17  VISVKHYTD--RLFRFCITRPKSFRFRSGEFVMLGL------------------------ 50
           V+S K+ +   + F   +   ++  F+SG +  + +                        
Sbjct: 14  VLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMD 73

Query: 51  -----IVNGRPIFRAYSIASPCRDDKLEFCSIK----------------VDKGFFTTYLQ 89
                  N     RAYS+A+   +  +   +++                +  G  ++Y+ 
Sbjct: 74  AWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIF 133

Query: 90  NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIIT 149
           +++PGD +++        I D+      +     G G+AP  + I       K    +  
Sbjct: 134 SLKPGDKVMMSGPYGDFHIQDT---DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSY 190

Query: 150 HTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY---LYKGRITNHIL 204
               R        ++ +E    EI ++    K     +  Q +     Y G I   I 
Sbjct: 191 WYGARSKN-----EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIY 243


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 53/235 (22%), Positives = 79/235 (33%), Gaps = 78/235 (33%)

Query: 5    SSELAADVYCESVISVKHYTD----RLFRFCITRP----------KSFRFRSGEFVML-G 49
            +S+ A DV+  +     H+ D     +    I  P          K  R R     M+  
Sbjct: 1638 TSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694

Query: 50   LIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLIL 109
             IV+G+   +   I     +    + + + +KG  +   Q  QP  T L+ K +  DL  
Sbjct: 1695 TIVDGK--LKTEKIFKEINEHSTSY-TFRSEKGLLSA-TQFTQPALT-LMEKAAFEDLKS 1749

Query: 110  DSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169
              LIP +           A FA                  H+ G  A L    DVM   S
Sbjct: 1750 KGLIPAD-----------ATFAG-----------------HSLGEYAALASLADVMSIES 1781

Query: 170  QDEILKDLIGQKLKFYRTVTQE-----DYLYKGRITNHILSGEFYRNMGLSPLNP 219
              E++         FYR +T +     D L  GR            N G+  +NP
Sbjct: 1782 LVEVV---------FYRGMTMQVAVPRDEL--GR-----------SNYGMIAINP 1814



 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 43/224 (19%), Positives = 61/224 (27%), Gaps = 108/224 (48%)

Query: 46  VMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTG 105
           V + L+ NG    +   ++ P +       S+    G     L+           K  +G
Sbjct: 366 VEISLV-NGA---KNLVVSGPPQ-------SLY---GL-NLTLRKA---------KAPSG 401

Query: 106 DLILD-SLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIIT---HTCGRVAELQYG 161
              LD S IP      FS            R  +   +F  + +    H+          
Sbjct: 402 ---LDQSRIP------FSE-----------RKLKFSNRF--LPVASPFHS-------HLL 432

Query: 162 IDVMHEISQDEILKDLIGQKLKF---------YRTVTQEDYL--YKGRI----------- 199
           +        D I KDL+   + F         Y T    D L    G I           
Sbjct: 433 VPA-----SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRL 486

Query: 200 -------TN----HIL---SGEFYRNMGLSPL---NPD---TRI 223
                  T     HIL    G      GL  L   N D    R+
Sbjct: 487 PVKWETTTQFKATHILDFGPG---GASGLGVLTHRNKDGTGVRV 527



 Score = 37.2 bits (86), Expect = 0.003
 Identities = 45/292 (15%), Positives = 73/292 (25%), Gaps = 145/292 (49%)

Query: 33  TRPKSFRFRSGEFVML---GLIVNG---RPIFRAYSIASPCR----DDK----------- 71
           TRP +    S E V+L            +  F    +  P      DD+           
Sbjct: 6   TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-ILPEPTEGFAADDEPTTPAELVGKF 64

Query: 72  LEFCSIKVD---------------KGFFTTYLQ--NI--------QPGDTILLHKKS--- 103
           L + S  V+                 F   YL+  +I        Q  DT L+  K    
Sbjct: 65  LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124

Query: 104 --------TGD--------LILDSLIPGN-RLY-LFSMGTG------------------- 126
                               +  ++  GN +L  +F  G G                   
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVL 183

Query: 127 IAPF--------ASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKD-- 176
           +           + +IR     +K           +      G++++  +       D  
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKV--------FTQ------GLNILEWLENPSNTPDKD 229

Query: 177 ----------LIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMGLSP 216
                     LIG        V Q   L  Y   +T  +L        G +P
Sbjct: 230 YLLSIPISCPLIG--------VIQ---LAHY--VVTAKLL--------GFTP 260


>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome
           P450 reductase, FNR, modular protein, oxidoreductase;
           HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1
           c.25.1.4 PDB: 1ddi_A*
          Length = 374

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 16/165 (9%)

Query: 21  KHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVD 80
           +HY        + R    +  +   + L          R YSIAS   + + E       
Sbjct: 127 QHYAATTPIVDMVRFSPAQLDAEALINL----LRPLTPRLYSIASSQAEVENEVHVTVGV 182

Query: 81  K-----------GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129
                       G  +     ++    + +  +   +  L +  P   + +   GTGIAP
Sbjct: 183 VRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA-NPETPVIMIGPGTGIAP 241

Query: 130 FASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEIL 174
           F + ++     +   +  +        E            ++ +L
Sbjct: 242 FRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL 286


>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
           oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
           norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
          Length = 688

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 59  RAYSIASPCRDDKLEFCSI-------------KVDKGFFTTYLQNIQPGDTILLHKKSTG 105
           R YSI+S       E                  V  G  +++L  IQ  D +    +   
Sbjct: 432 RYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP 491

Query: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
              L    P     L   GTGIAPF S  + 
Sbjct: 492 SFHLPR-NPQVPCILVGPGTGIAPFRSFWQQ 521


>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
           oxidoreductase; 2.00A {Homo sapiens}
          Length = 186

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 117 RLYLFSMGTGIAPFASMIR-------DPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169
            + L   G G+ PFAS+++       +  T  K  ++     C      ++  D++  + 
Sbjct: 19  VVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLE 78

Query: 170 QDEILKDLIG-QKLKFYRTVTQEDYLYKGRITNH 202
                ++  G      Y T   E       + + 
Sbjct: 79  SQMQERNNAGFLSYNIYLTGWDESQANHFAVHHD 112


>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
           motif, flattened antiparallel beta barrel, flexible
           hinge region; HET: FAD; 1.90A {Homo sapiens} PDB:
           2qtz_A*
          Length = 539

 Score = 35.9 bits (82), Expect = 0.008
 Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 41/163 (25%)

Query: 5   SSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIA 64
           S + AAD       +     D L  F   +P              L    +   R YS A
Sbjct: 247 SKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLL---------LEHLPKLQPRPYSCA 297

Query: 65  SPCR--DDKLEFCSIKVD-----------KGFFTTYLQNIQP------------------ 93
           S       KL F    V+           KG  T +L  +                    
Sbjct: 298 SSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKAL 357

Query: 94  GDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
              I +  ++T    L    P   + +   GTGIAPF   ++ 
Sbjct: 358 APKISIFPRTTNSFHLPDD-PSIPIIMVGPGTGIAPFIGFLQH 399


>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP
           EPE; 1.80A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2
           c.25.1.4 PDB: 1ja0_A* 1j9z_A* 3es9_A* 1amo_A* 3fjo_A*
           1b1c_A*
          Length = 622

 Score = 35.9 bits (82), Expect = 0.008
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 19/106 (17%)

Query: 47  MLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVD---------KGFFTTYLQNIQPGDTI 97
           +  L+   +  + A + +S    + +  C++ V+         KG  T++L+  +P    
Sbjct: 388 LCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGEN 447

Query: 98  -------LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
                  +  +KS   L   S  P   + +   GTGIAPF   I++
Sbjct: 448 GGRALVPMFVRKSQFRLPFKSTTP---VIMVGPGTGIAPFMGFIQE 490


>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
           reductase, diflavin reductase, FAD, FMN-binding,
           electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
           cerevisiae} PDB: 2bn4_A* 2bf4_A*
          Length = 682

 Score = 30.2 bits (67), Expect = 0.43
 Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 69  DDKLEFCSIKVDKGFFTTYLQNIQPGDTILLH-KKSTGDLILDSLIPGNRLYLFSMGTGI 127
            + +      +   +     + +     + +H ++S   L  +   P   + +   GTG+
Sbjct: 480 QNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTP---VIMIGPGTGV 536

Query: 128 APFASMIRDPETYKK 142
           APF   IR+   + +
Sbjct: 537 APFRGFIRERVAFLE 551


>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
           hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
           b.18.1.5 b.30.5.1 c.1.8.3
          Length = 1024

 Score = 28.0 bits (61), Expect = 1.9
 Identities = 10/48 (20%), Positives = 17/48 (35%)

Query: 11  DVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIF 58
           +V   S    + Y   +     +      FR+   V    +VNGR + 
Sbjct: 282 NVEPWSAEVPRLYEASVSSAAESISVRLGFRTVRIVGDQFLVNGRRVV 329


>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
           2.10A {Leishmania tarentolae} SCOP: c.61.1.1
          Length = 211

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 7/108 (6%)

Query: 104 TGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGID 163
             D     L   N LYL  +  G   F + +      +   +  +      +    YG  
Sbjct: 45  AADYKDFHLTADNPLYLLCVLKGSFIFTADL-----ARFLADEGVPVKVEFICASSYGSG 99

Query: 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRN 211
              E S    +   +   ++    +  ED +       +++     + 
Sbjct: 100 --VETSGQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKK 145


>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein
           structure initiative; 1.88A {Caenorhabditis elegans}
          Length = 481

 Score = 26.5 bits (57), Expect = 4.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 154 RVAELQYGIDVMHEISQDEILKDLIGQKLKF 184
           ++AE       ++E   DEI+    G+ L F
Sbjct: 46  KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF 76


>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics,
           structural genomics consortium, SGC, oxidoreductase;
           HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3itk_A*
          Length = 467

 Score = 26.5 bits (57), Expect = 4.7
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 154 RVAELQYGIDVMHEISQDEILKDLIGQKLKF 184
           R+         ++E    E+++   G+ L F
Sbjct: 42  RINAWNSPTLPIYEPGLKEVVESCRGKNLFF 72


>1x87_A Urocanase protein; structural genomics, protein structure
           initiative, MCSG, PSI, midwest center for structural
           genomics; HET: MSE NAD; 2.40A {Geobacillus
           stearothermophilus} SCOP: e.51.1.1
          Length = 551

 Score = 26.7 bits (59), Expect = 4.8
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 27/98 (27%)

Query: 120 LFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI- 178
           LF  G G   + ++  DPE   K DEVI                 + E S +E L   I 
Sbjct: 348 LFCEGKGPFRWVALSGDPEDIYKTDEVI-----------------LREFSDNERLCHWIR 390

Query: 179 --GQKLKFYRTVTQEDYL-YKGRIT------NHILSGE 207
              +++KF     +  +L Y  R        + +  GE
Sbjct: 391 MAQKRIKFQGLPARICWLGYGERAKFGKIINDMVAKGE 428


>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus
           subtilis}
          Length = 552

 Score = 26.7 bits (59), Expect = 5.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 120 LFSMGTGIAPFASMIRDPETYKKFDEVI 147
           LF  G G   +A++  DP    + D ++
Sbjct: 349 LFCEGKGPFRWAALSGDPADIYRTDALL 376


>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural
           protein; NMR {Saccharomyces cerevisiae}
          Length = 134

 Score = 25.9 bits (57), Expect = 7.9
 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 9/59 (15%)

Query: 66  PCRDDKLEFCSIKVDKGFFTTYLQNIQPGD--------TILLHKKSTGDLILDSLIPGN 116
              DD+                +  +   +        T LL ++       D+L    
Sbjct: 56  ELIDDERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLARQGD-LAGADALTENT 113


>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium; 1.80A {Bacillus subtilis} SCOP:
           c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
          Length = 240

 Score = 25.5 bits (55), Expect = 9.7
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 88  LQNIQPGDTILLH--KKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPET 139
           ++   PG   LLH   +   +  LD  I      L   G        ++ + E 
Sbjct: 187 IKQAHPGAIYLLHTVSRDNAE-ALDDAIT----DLKKQGYTFKSIDDLMFEKEM 235


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,987,207
Number of extensions: 91091
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 41
Length of query: 224
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 135
Effective length of database: 3,535,514
Effective search space: 477294390
Effective search space used: 477294390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)