BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(224 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 462 bits (1188), Expect = e-132, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA 60
MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA
Sbjct: 1 MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA 60
Query: 61 YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL 120
YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL
Sbjct: 61 YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL 120
Query: 121 FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ 180
FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ
Sbjct: 121 FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ 180
Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRIG 224
KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRIG
Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDTRIG 224
>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 395 bits (1014), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/221 (85%), Positives = 204/221 (92%)
Query: 1 MCDVSSELAADVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRA 60
MCDVS +L +VYCESVIS+KHYTDRLFRFCITRPKSFRFRSGEFVMLGL+VNGR I RA
Sbjct: 1 MCDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRA 60
Query: 61 YSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYL 120
YS+ASPC DDKLEF SIKV++G TT+LQNIQPGDTILLHKKSTG L+LD+LIPGNRLYL
Sbjct: 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYL 120
Query: 121 FSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQ 180
FS GTGIAPF S+IRDP TY+KFDEVI+T TC +V ELQYGIDVMHEISQDEILKDLIGQ
Sbjct: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQ 180
Query: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGLSPLNPDT 221
KLKFYRTVTQEDYLYKGRITNHILSGEFYRNM LSPLNPDT
Sbjct: 181 KLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDT 221
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 30.0 bits (66), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDYLY-----KGRITNHILSGEFYRNMGLS 215
V++ +Q+E LK +I +++FY ED Y KGR IL G+ Y MG++
Sbjct: 134 VLNFYAQNE-LKPIIAPEIEFYLIAKNEDPDYPLQPPKGRSGRSILGGQSYSIMGIN 189
>gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 229
Score = 26.6 bits (57), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 69 DDKLEFCSIK------VDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSL 112
D++L+F S + V + + ++ GDT+L HK D++LD L
Sbjct: 10 DEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQL 59
>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Length = 648
Score = 25.4 bits (54), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 19/120 (15%)
Query: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKK--FDEVII-----THTCGRVAEL 158
DL+L LIPGNR+ + G P S IR Y K F+++I+ +
Sbjct: 336 DLVLCHLIPGNRVNFVLLSRGEDP-DSFIR---CYGKTAFEKLIVESLPLVDMLWKRETE 391
Query: 159 QYGIDVMHEISQDEI-LKDLIG----QKLKFYRTVTQED---YLYKGRITNHILSGEFYR 210
+ E ++ EI LK+ I QKL++Y + D L++ IT H G +++
Sbjct: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451
>gi|254780311|ref|YP_003064724.1| hypothetical protein CLIBASIA_00980 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 177
Score = 25.0 bits (53), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 21/109 (19%)
Query: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVM 165
D+ L G R++LF++ P S + P K +D++ C + E+ Y + V
Sbjct: 30 DVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL----RCEGIEEV-YCLSV- 83
Query: 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMGL 214
D + + G+KL+ D SGEF R MG+
Sbjct: 84 ----NDAFVMNAWGKKLEIKNVKLLPDG-----------SGEFTRKMGM 117
>gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 157
Score = 24.6 bits (52), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 65 SPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKK 102
S C + + F S+K D +T L I P D+I HKK
Sbjct: 44 SGCTAEAINFSSLKADFDEESTILIGISP-DSIASHKK 80
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 24.3 bits (51), Expect = 1.7, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKG-----RITNHILSGEF--YR 210
+S DEI + FYR+ + D YKG + NH L +F YR
Sbjct: 607 LSPDEIKQRFQKYAKVFYRSYSPVDGSYKGTQESDKAINHFLDNDFGYYR 656
>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 332
Score = 23.1 bits (48), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 79 VDKGFFTTYLQ-----NIQPGDTILLHKKSTG 105
+ + FFT + N++ G T+L+H S+G
Sbjct: 126 LPESFFTVWANLFQTANLRSGQTVLIHGGSSG 157
>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 445
Score = 22.3 bits (46), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 141 KKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQK 181
K FD V++ C ++ DV+ D+I+K Q+
Sbjct: 305 KLFDAVLVDAPCSSTGTIRRHPDVLWTRDTDDIVKSACFQR 345
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.143 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,018
Number of Sequences: 1233
Number of extensions: 6431
Number of successful extensions: 23
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 12
length of query: 224
length of database: 328,796
effective HSP length: 71
effective length of query: 153
effective length of database: 241,253
effective search space: 36911709
effective search space used: 36911709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)