HHsearch alignment for GI: 254780365 and conserved domain: COG1208
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=351.85 Aligned_cols=230 Identities=24% Similarity=0.406 Sum_probs=195.1
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf 89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA 88 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~ 88 (299)
T Consensus 3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-------------- 68 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-------------- 68 (358)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHC--------------
T ss_conf 599994665666355448997446579986459999999998799789998774689999998626--------------
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf 0011344112485799843334233466542110112233331112786444544332211222122343220-011243
Q gi|254780365|r 89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVSE 167 (299)
Q Consensus 89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~~ 167 (299)
T Consensus 69 --------~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~d-----l~~l~~~~~~~~~~~~~~~~~ 135 (358)
T COG1208 69 --------EGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLD-----LSELLEFHKKKGALATIALTR 135 (358)
T ss_pred --------CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC-----HHHHHHHHHHCCCCCEEEEEE
T ss_conf --------3569865997168766648999999886079978999788622468-----899999987356642799875
Q ss_pred CCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28544331331001333333530000002577888673423302020027233110001226667675003789999983
Q gi|254780365|r 168 CDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 (299)
Q Consensus 168 v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~ 247 (299)
T Consensus 136 ~~--~~~~~Gvv~~~~~~----~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~----~~~-~~~~~l~~ 204 (358)
T COG1208 136 VL--DPSEFGVVETDDGD----GRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFD----FEE-ELLPALAA 204 (358)
T ss_pred CC--CCCCCCEEEECCCC----CEEEEEEECCCCCCCCCCEEEEEEEEECHHHHCCCCCCCCCC----CHH-HHHHHHHH
T ss_conf 27--76558639975998----489889972667678886699999998978943013357432----147-78999987
Q ss_pred CCC-EEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 198-48999813786439988999999998
Q gi|254780365|r 248 RHD-FLAYHFKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 248 ~~~-v~a~~~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~ 234 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELL 234 (358)
T ss_pred CCCCEEEEEECCEEEECCCHHHHHHHHHHH
T ss_conf 699569997578799699989999999999