HHsearch alignment for GI: 254780365 and conserved domain: COG1211

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=98.69  E-value=4.5e-08  Score=69.58  Aligned_cols=216  Identities=19%  Similarity=0.292  Sum_probs=111.1

Q ss_pred             CCCEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHC
Q ss_conf             5458999568888334324408883335688362799999999978-998899981355444101001174544456541
Q gi|254780365|r    6 KVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKR   84 (299)
Q Consensus         6 ~i~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~   84 (299)
T Consensus         3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~---~~~~------~~~~--   68 (230)
T COG1211           3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD---PYFE------KLPK--   68 (230)
T ss_pred             CEEEEEEECCCCCCCCCC---CCCCEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHH---HHHH------HHHH--
T ss_conf             407999975763433579---9984588999988569999999747676769999784664---8999------8632--


Q ss_pred             CCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             870000113441124857998433342334665421101122--333311127864445443322112221223432200
Q gi|254780365|r   85 NKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG--DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI  162 (299)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~--de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~v  162 (299)
T Consensus        69 ------------~~~~~~v~~v~GG~--~R~~SV~~gL~~~~~~~~~~Vlv-HDa-aRPf~~~~~i~~li~~~~~~~aai  132 (230)
T COG1211          69 ------------LSADKRVEVVKGGA--TRQESVYNGLQALSKYDSDWVLV-HDA-ARPFLTPKLIKRLIELADKYGAAI  132 (230)
T ss_pred             ------------HCCCCEEEEECCCC--CHHHHHHHHHHHHHCCCCCEEEE-ECC-CCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             ------------12487079934875--17999999999721158988999-646-667899999999998622388179


Q ss_pred             EEEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHH-EECHHHHH--HHCCC-CCCCCCCCCCH
Q ss_conf             1124328544331331001333333530000002577888673423302020-02723311--00012-26667675003
Q gi|254780365|r  163 LAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRY-ILHPDIFS--ILNDW-KENEGKGEIQL  238 (299)
Q Consensus       163 i~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiY-i~~~~i~~--~L~~~-~~~~~~gE~~l  238 (299)
T Consensus       133 ~al-pv~D-T------ik~~~----~~~~i~~t---~~R----~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~-~~~  187 (230)
T COG1211         133 LAL-PVTD-T------LKRVD----ADGNIVET---VDR----S-----GLWAAQTPQAFRLELLKQALARAFAEG-REI  187 (230)
T ss_pred             EEE-ECCC-C------EEEEC----CCCCEEEC---CCH----H-----HHHHHHCCCCCCHHHHHHHHHHHHHCC-CCC
T ss_conf             975-0467-3------78865----89872344---375----5-----423433876331999999999998628-776


Q ss_pred             HHHHHHHHHCC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             78999998319-848999813786439988999999998
Q gi|254780365|r  239 TDSMRKLSERH-DFLAYHFKGHTYDCGSKKGFVLANIAF  276 (299)
Q Consensus       239 tD~i~~l~~~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~  276 (299)
T Consensus       188 tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il  226 (230)
T COG1211         188 TDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAIL  226 (230)
T ss_pred             CCHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
T ss_conf             886999987699819982683305762888999999875