HHsearch alignment for GI: 254780365 and conserved domain: COG1211
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=98.69 E-value=4.5e-08 Score=69.58 Aligned_cols=216 Identities=19% Similarity=0.292 Sum_probs=111.1
Q ss_pred CCCEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHC
Q ss_conf 5458999568888334324408883335688362799999999978-998899981355444101001174544456541
Q gi|254780365|r 6 KVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKR 84 (299)
Q Consensus 6 ~i~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~ 84 (299)
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~---~~~~------~~~~-- 68 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDD---PYFE------KLPK-- 68 (230)
T ss_pred CEEEEEEECCCCCCCCCC---CCCCEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHH---HHHH------HHHH--
T ss_conf 407999975763433579---9984588999988569999999747676769999784664---8999------8632--
Q ss_pred CCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 870000113441124857998433342334665421101122--333311127864445443322112221223432200
Q gi|254780365|r 85 NKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG--DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI 162 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~--de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~v 162 (299)
T Consensus 69 ------------~~~~~~v~~v~GG~--~R~~SV~~gL~~~~~~~~~~Vlv-HDa-aRPf~~~~~i~~li~~~~~~~aai 132 (230)
T COG1211 69 ------------LSADKRVEVVKGGA--TRQESVYNGLQALSKYDSDWVLV-HDA-ARPFLTPKLIKRLIELADKYGAAI 132 (230)
T ss_pred ------------HCCCCEEEEECCCC--CHHHHHHHHHHHHHCCCCCEEEE-ECC-CCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf ------------12487079934875--17999999999721158988999-646-667899999999998622388179
Q ss_pred EEEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHH-EECHHHHH--HHCCC-CCCCCCCCCCH
Q ss_conf 1124328544331331001333333530000002577888673423302020-02723311--00012-26667675003
Q gi|254780365|r 163 LAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRY-ILHPDIFS--ILNDW-KENEGKGEIQL 238 (299)
Q Consensus 163 i~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiY-i~~~~i~~--~L~~~-~~~~~~gE~~l 238 (299)
T Consensus 133 ~al-pv~D-T------ik~~~----~~~~i~~t---~~R----~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~-~~~ 187 (230)
T COG1211 133 LAL-PVTD-T------LKRVD----ADGNIVET---VDR----S-----GLWAAQTPQAFRLELLKQALARAFAEG-REI 187 (230)
T ss_pred EEE-ECCC-C------EEEEC----CCCCEEEC---CCH----H-----HHHHHHCCCCCCHHHHHHHHHHHHHCC-CCC
T ss_conf 975-0467-3------78865----89872344---375----5-----423433876331999999999998628-776
Q ss_pred HHHHHHHHHCC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 78999998319-848999813786439988999999998
Q gi|254780365|r 239 TDSMRKLSERH-DFLAYHFKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 239 tD~i~~l~~~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 188 tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il 226 (230)
T COG1211 188 TDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAIL 226 (230)
T ss_pred CCHHHHHHHCCCCEEEEECCCCEEEECCHHHHHHHHHHH
T ss_conf 886999987699819982683305762888999999875