HHsearch alignment for GI: 254780365 and conserved domain: COG4750

>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].
Probab=99.67  E-value=2.5e-17  Score=126.58  Aligned_cols=214  Identities=18%  Similarity=0.253  Sum_probs=119.6

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf             89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r    9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA   88 (299)
Q Consensus         9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~   88 (299)
T Consensus         2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-----------YLkdKy---   67 (231)
T COG4750           2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-----------YLKDKY---   67 (231)
T ss_pred             CEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHH-----------HHHHHC---
T ss_conf             618994255665331310287678873585509999999997798618999631489999-----------998715---


Q ss_pred             EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             00113441124857998433342334665421101122333311127864445443322112221223432200112432
Q gi|254780365|r   89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSEC  168 (299)
Q Consensus        89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~vi~~~~v  168 (299)
T Consensus        68 -----------~vtLvyN~kY~~yNn~ySlyla~d~l~nt--YiidsDnyl~kNif~--------~~~~-~S~Yfav~~~  125 (231)
T COG4750          68 -----------DVTLVYNPKYREYNNIYSLYLARDFLNNT--YIIDSDNYLTKNIFL--------TKES-HSKYFAVYRS  125 (231)
T ss_pred             -----------CEEEEECCHHHHHHHHHHHHHHHHHHCCC--EEECCCHHHHHHHHH--------CCCC-CCEEEEEEEC
T ss_conf             -----------74999574077663099999999985256--795050476665552--------5735-2127899963


Q ss_pred             CHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHH----HHHHHCCCCC-CCCCCCCCHHHHHH
Q ss_conf             854433133100133333353000000257788867342330202002723----3110001226-66767500378999
Q gi|254780365|r  169 DPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD----IFSILNDWKE-NEGKGEIQLTDSMR  243 (299)
Q Consensus       169 ~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~----i~~~L~~~~~-~~~~gE~~ltD~i~  243 (299)
T Consensus       126 ~~t--nEw~-l~~-----~~~~ki~~v~----Igg-~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k-~yWd~v~~  191 (231)
T COG4750         126 GKT--NEWL-LIY-----NSDGKITRVD----IGG-LNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRK-LYWDTVPM  191 (231)
T ss_pred             CCC--CEEE-EEE-----CCCCCEEEEE----ECC-CCCCEEEEEEEECCHHHHHHHHHHHHHHHCCHHHH-HHHHHHHH
T ss_conf             877--4257-997-----6998489999----668-55625751144234247999999999983724266-78887799


Q ss_pred             HHHHCCCEEEEEE-EEEEEECCCHHHHHHH
Q ss_conf             9983198489998-1378643998899999
Q gi|254780365|r  244 KLSERHDFLAYHF-KGHTYDCGSKKGFVLA  272 (299)
Q Consensus       244 ~l~~~~~v~a~~~-~g~w~DiG~~~~yl~A  272 (299)
T Consensus       192 ~ni~~l~m~iek~~~n~IyE~DsLdelrk~  221 (231)
T COG4750         192 ENIKELDMYIEKLNDNDIYEFDSLDELRKF  221 (231)
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             877887676886167845874369999864