HHsearch alignment for GI: 254780365 and conserved domain: COG4750
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].
Probab=99.67 E-value=2.5e-17 Score=126.58 Aligned_cols=214 Identities=18% Similarity=0.253 Sum_probs=119.6
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf 89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA 88 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~ 88 (299)
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-----------YLkdKy--- 67 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-----------YLKDKY--- 67 (231)
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEHHHHHH-----------HHHHHC---
T ss_conf 618994255665331310287678873585509999999997798618999631489999-----------998715---
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 00113441124857998433342334665421101122333311127864445443322112221223432200112432
Q gi|254780365|r 89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSEC 168 (299)
Q Consensus 89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~vi~~~~v 168 (299)
T Consensus 68 -----------~vtLvyN~kY~~yNn~ySlyla~d~l~nt--YiidsDnyl~kNif~--------~~~~-~S~Yfav~~~ 125 (231)
T COG4750 68 -----------DVTLVYNPKYREYNNIYSLYLARDFLNNT--YIIDSDNYLTKNIFL--------TKES-HSKYFAVYRS 125 (231)
T ss_pred -----------CEEEEECCHHHHHHHHHHHHHHHHHHCCC--EEECCCHHHHHHHHH--------CCCC-CCEEEEEEEC
T ss_conf -----------74999574077663099999999985256--795050476665552--------5735-2127899963
Q ss_pred CHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHH----HHHHHCCCCC-CCCCCCCCHHHHHH
Q ss_conf 854433133100133333353000000257788867342330202002723----3110001226-66767500378999
Q gi|254780365|r 169 DPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD----IFSILNDWKE-NEGKGEIQLTDSMR 243 (299)
Q Consensus 169 ~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~----i~~~L~~~~~-~~~~gE~~ltD~i~ 243 (299)
T Consensus 126 ~~t--nEw~-l~~-----~~~~ki~~v~----Igg-~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k-~yWd~v~~ 191 (231)
T COG4750 126 GKT--NEWL-LIY-----NSDGKITRVD----IGG-LNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRK-LYWDTVPM 191 (231)
T ss_pred CCC--CEEE-EEE-----CCCCCEEEEE----ECC-CCCCEEEEEEEECCHHHHHHHHHHHHHHHCCHHHH-HHHHHHHH
T ss_conf 877--4257-997-----6998489999----668-55625751144234247999999999983724266-78887799
Q ss_pred HHHHCCCEEEEEE-EEEEEECCCHHHHHHH
Q ss_conf 9983198489998-1378643998899999
Q gi|254780365|r 244 KLSERHDFLAYHF-KGHTYDCGSKKGFVLA 272 (299)
Q Consensus 244 ~l~~~~~v~a~~~-~g~w~DiG~~~~yl~A 272 (299)
T Consensus 192 ~ni~~l~m~iek~~~n~IyE~DsLdelrk~ 221 (231)
T COG4750 192 ENIKELDMYIEKLNDNDIYEFDSLDELRKF 221 (231)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 877887676886167845874369999864