HHsearch alignment for GI: 254780365 and conserved domain: PRK05450
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=99.18 E-value=8e-10 Score=80.35 Aligned_cols=225 Identities=16% Similarity=0.111 Sum_probs=125.2
Q ss_pred CCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 885458999568888334324408883335688362799999999978-9988999813554441010011745444565
Q gi|254780365|r 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLR 82 (299)
Q Consensus 4 m~~i~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~ 82 (299)
T Consensus 1 Mk--~~~iIPAR~~SsR~P------gKpL~~I~GkpmI~~v~~~a~~~~~~~~V~VATdd--~~I~~~~----------~ 60 (248)
T PRK05450 1 MK--FVVIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKASGADRVVVATDD--ERIADAV----------E 60 (248)
T ss_pred CC--EEEEEECCCCCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHH----------H
T ss_conf 97--799980797787899------86202418969899999999966898829997088--5244353----------1
Q ss_pred HCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41870000113441124857998433342334665421101122--33331-1127864445443322112221223432
Q gi|254780365|r 83 KRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG--DNPFA-LLLPDMIMSPLEGENCMANMIKLYEKEG 159 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~--de~fl-v~~gD~i~~~~~~~~~l~~li~~~~~~~ 159 (299)
T Consensus 61 ~---------------~g~~~imTs~~h~~GTd-Ri~Ea~~~l~~~~~d~IInvQGDEPli~p---~~I~~li~~~~~~~ 121 (248)
T PRK05450 61 A---------------FGGEVVMTSADHPSGTD-RIAEAAAKLGLSDDDIVVNVQGDEPLIPP---ELIDQVAEPLAAHP 121 (248)
T ss_pred C---------------CCCCEEECCCCCCCCHH-HHHHHHHHCCCCCCCEEEEECCCCCCCCH---HHHHHHHHHHHHCC
T ss_conf 5---------------68623404645477038-99999985087778689993598677899---99999999998588
Q ss_pred C-CE-EEEEEC-CHHHCCCCCCEECCCCCCCCCCEEEEECCCCCC-------CCCCCC-EEECHHHEECHHHHHHHCCCC
Q ss_conf 2-00-112432-854433133100133333353000000257788-------867342-330202002723311000122
Q gi|254780365|r 160 A-NI-LAVSEC-DPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDS-------STFISN-FFINGRYILHPDIFSILNDWK 228 (299)
Q Consensus 160 ~-~v-i~~~~v-~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~-------~~~~Sn-l~~~GiYi~~~~i~~~L~~~~ 228 (299)
T Consensus 122 ~~~i~tl~~~~~~~~~~~d~n~VKvv~~~---~~~alyfSRs~IP~~~~~~~~~~~~~~~~hiGiy~f~~~~L~~f~~l~ 198 (248)
T PRK05450 122 EADMATLAVPIDDEEELFNPNVVKVVLDK---NGYALYFSRAPIPWGRDAADPTAPTPVYRHIGIYAYRRGFLRRFVSLP 198 (248)
T ss_pred CCEEEEEEEECCCHHHHHCCCCEEEEECC---CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHHHHCC
T ss_conf 66399999862888996088834899899---998405542678754443212355551689998860099999987469
Q ss_pred CCCCCCCCCHHHHHHHH--HHCC-CEEEEEEEE-EEEECCCHHHHHHHHH
Q ss_conf 66676750037899999--8319-848999813-7864399889999999
Q gi|254780365|r 229 ENEGKGEIQLTDSMRKL--SERH-DFLAYHFKG-HTYDCGSKKGFVLANI 274 (299)
Q Consensus 229 ~~~~~gE~~ltD~i~~l--~~~~-~v~a~~~~g-~w~DiG~~~~yl~A~~ 274 (299)
T Consensus 199 ~s~----lE~~E~lEqLR~leng~~I~~~~~~~~~~~~VDT~eDl~~v~~ 244 (248)
T PRK05450 199 PSP----LEQIESLEQLRALENGYRIHVAVVDEAPSPGVDTPEDLERVRA 244 (248)
T ss_pred CCH----HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 981----4656526999999859957999967899999779999999999