HHsearch alignment for GI: 254780365 and conserved domain: PRK13368
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=99.28 E-value=4.2e-11 Score=88.24 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=132.0
Q ss_pred CCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 885458999568888334324408883335688362799999999978-9988999813554441010011745444565
Q gi|254780365|r 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLR 82 (299)
Q Consensus 4 m~~i~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~ 82 (299)
T Consensus 1 Mk--~~~iIPAR~~S~R~p------~K~L~~i~g~pmi~~v~~~a~~s~~~d~v~VaTdd~--eI~~~----------~k 60 (238)
T PRK13368 1 MK--VVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQ--RIEDA----------VE 60 (238)
T ss_pred CC--EEEEECCCCCCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCH--HHHHH----------HH
T ss_conf 97--899984687787899------870125289699999999998468988299956842--48777----------50
Q ss_pred HCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 418700001134411248579984333423346654211011223333111278644454433221122212234322-0
Q gi|254780365|r 83 KRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGA-N 161 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~-~ 161 (299)
T Consensus 61 ~---------------~g~~~i~ts~~~~~GTd-Ri~Ea~~~~~~d~ivnvQgDePli~p---~~I~~~i~~~~~~~~~~ 121 (238)
T PRK13368 61 A---------------FGGKVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPLIRP---RDIDTLIQPMLDDPSIN 121 (238)
T ss_pred C---------------CCCEEEECCCCCCCCHH-HHHHHHHHCCCCEEEEECCCCCCCCH---HHHHHHHHHHHHCCCCE
T ss_conf 0---------------46327851565577147-89999851598789995388677899---99999999998377652
Q ss_pred E-EEEEECC-HHHCCCCCCEECCCCCCCCCCEEEEECCCC--CCCC-CCCC-EEECHHHEECHHHHHHHCCCCCCCCCCC
Q ss_conf 0-1124328-544331331001333333530000002577--8886-7342-3302020027233110001226667675
Q gi|254780365|r 162 I-LAVSECD-PQLSCKYGMVQVGKAIDHQVFHISDMIEKP--DSST-FISN-FFINGRYILHPDIFSILNDWKENEGKGE 235 (299)
Q Consensus 162 v-i~~~~v~-~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP--~~~~-~~Sn-l~~~GiYi~~~~i~~~L~~~~~~~~~gE 235 (299)
T Consensus 122 v~t~~~~~~~~~~~~n~n~vKvv~---~~~~~~lyfSR~~ip~~~~~~~~~~~khiGiy~f~~~~L~~f~~l~~s----~ 194 (238)
T PRK13368 122 VATLCAPISTEEEFESPNVVKVVV---DKNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET----P 194 (238)
T ss_pred EEEEEECCCCHHHHCCCCCEEEEE---CCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEECHHHHHHHHHCCCC----H
T ss_conf 767874168888843898529998---997870114525675112454201220301122119999998708998----5
Q ss_pred CCHHHHHHHH--HHCC-CEEEEEEEEEEEECCCHHHHHHHH
Q ss_conf 0037899999--8319-848999813786439988999999
Q gi|254780365|r 236 IQLTDSMRKL--SERH-DFLAYHFKGHTYDCGSKKGFVLAN 273 (299)
Q Consensus 236 ~~ltD~i~~l--~~~~-~v~a~~~~g~w~DiG~~~~yl~A~ 273 (299)
T Consensus 195 lE~~E~lEqLR~leng~~I~~~~~~~~~~~VDt~eDl~~v~ 235 (238)
T PRK13368 195 LEQIESLEQLRALEHGYKIRMVEVEATSIGVDTPEDLERVR 235 (238)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 67777089999998699267999599999987999999999