HHsearch alignment for GI: 254780365 and conserved domain: TIGR00466
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=95.56 E-value=0.02 Score=34.89 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=42.3
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899956888833432440888333568836279999999997899889998135
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~ 62 (299)
T Consensus 4 ~vIIPAR~~SsRl~------~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~D~ 51 (246)
T TIGR00466 4 VVIIPARLASSRLP------GKPLEDIKGKPMIVHVLEKANESGADRVIVATDD 51 (246)
T ss_pred EEEECCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89853653113589------8720355789368899999752363568997487