HHsearch alignment for GI: 254780365 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=100.00 E-value=0 Score=466.99 Aligned_cols=232 Identities=28% Similarity=0.473 Sum_probs=208.7
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 899956888833432440888333568836279999999997899889998135-5444101001174544456541870
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR-GKGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~-~k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 1 KaliL~aG~GTRLRPLTFt~pK~LiPvAnKPi~~Yaie~~~~AGI~diGIvvg~~~~e~i~~~~g--------------- 65 (361)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLIEAGITDIGIVVGPETGEEIKEIVG--------------- 65 (361)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHEEEEC---------------
T ss_conf 92442587867677766578843066168732367688887469769999846988212202324---------------
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEE
Q ss_conf 0001134411248579984333423346654211011-223333111278644454433221122212234322-00112
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI-IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGA-NILAV 165 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~-i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~-~vi~~ 165 (299)
T Consensus 66 -------~g~~fg~kityI~Q~~plGlAHAv~~A~~fGlgd~~FvvYLGDNl~~~g-----i~~fv~~F~~~~~da~ILL 133 (361)
T TIGR01208 66 -------EGERFGAKITYIVQGEPLGLAHAVYVARDFGLGDEDFVVYLGDNLIQDG-----IKRFVKSFEEKDYDALILL 133 (361)
T ss_pred -------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHH-----HHHHHHHHCCCCCCCEEEC
T ss_conf -------8830232898982278760467645788847899860797374210423-----7899885331480030110
Q ss_pred EECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECH--HHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 43285443313310013333335300000025778886734233020200272--3311000122666767500378999
Q gi|254780365|r 166 SECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHP--DIFSILNDWKENEGKGEIQLTDSMR 243 (299)
Q Consensus 166 ~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~--~i~~~L~~~~~~~~~gE~~ltD~i~ 243 (299)
T Consensus 134 ~~V--~dP~~FGVA~l~d~G~----~i~~LvEKPk--~PPSNLAvvGlY~F~pPe~if~~~~~~kPSw-RGElEITD~IQ 204 (361)
T TIGR01208 134 KKV--EDPTAFGVAELEDDGK----RILKLVEKPK--EPPSNLAVVGLYMFRPPELIFEAIKNIKPSW-RGELEITDAIQ 204 (361)
T ss_pred CCC--CCCCCCCEEEEECCCC----EEEEEEECCC--CCCCCCEEEEEEECCCHHHHHHHHHCCCCCC-CCCHHHHHHHH
T ss_conf 438--8788455589924897----9999883386--5787701233453387779888985288877-66215775775
Q ss_pred HHHHCC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 998319-848999813786439988999999998
Q gi|254780365|r 244 KLSERH-DFLAYHFKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 244 ~l~~~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 205 ~lIe~Gy~V~~~~v~GWWkDTGk~eDLL~AN~~i 238 (361)
T TIGR01208 205 YLIEKGYKVGGSKVKGWWKDTGKPEDLLDANRLI 238 (361)
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 6531583777799978870159802389999997