HHsearch alignment for GI: 254780365 and conserved domain: TIGR02623

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=100.00  E-value=4.8e-40  Score=266.40  Aligned_cols=232  Identities=20%  Similarity=0.315  Sum_probs=190.4

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf             89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r    9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA   88 (299)
Q Consensus         9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~   88 (299)
T Consensus         2 KaViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkGy~IKeyF~-NY~l~~SDvT~~l~~   80 (256)
T TIGR02623         2 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKGYVIKEYFA-NYFLHMSDVTIDLED   80 (256)
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECC-CCEEECCEEEEEECC
T ss_conf             3799717864432243535897607767963778899999752833027885343322010010-632311316787515


Q ss_pred             EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEE
Q ss_conf             00113441124857998433342334665421101122-3333111278644454433221122212234322--00112
Q gi|254780365|r   89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG-DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAV  165 (299)
Q Consensus        89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~-de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~--~vi~~  165 (299)
T Consensus        81 n~~~~H~~~~EPW~VTLvDTG~~t~TGGRl~Rv~~~~~~d~~Fc~TYGDGv~~~~-----I~~~~~~H~~~g~~AT~tAv  155 (256)
T TIGR02623        81 NTIEVHEKRAEPWRVTLVDTGESTQTGGRLKRVREYLEDDEAFCLTYGDGVADID-----IKALIAFHRKHGKKATVTAV  155 (256)
T ss_pred             CEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC-----HHHHHHHHHHCCCCEEEEEE
T ss_conf             7045312138971688885687766783278899984378768987158503325-----89999998862980678860


Q ss_pred             EECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             43285443313310013333335300000025778886734233020200272331100012266676750037899999
Q gi|254780365|r  166 SECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKL  245 (299)
Q Consensus       166 ~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l  245 (299)
T Consensus       156 ~P-----PGRfGaL~~~~~------~V~~F~EKP~gd~---g~iNGGFFVL~P~V~d~I~~D~~~wE~------~~L~~L  215 (256)
T TIGR02623       156 QP-----PGRFGALELEGE------SVTSFQEKPLGDG---GLINGGFFVLNPSVLDLIDGDATVWES------EPLETL  215 (256)
T ss_pred             CC-----CCCEEEEEECCC------CEEEECCCCCCCC---EEEECCEEEECCCEEEEECCCCEEECC------HHHHHH
T ss_conf             78-----883023677255------1111014748898---168065687483202022488502010------378999


Q ss_pred             HHCCCEEEEEEEEEEEECCCH
Q ss_conf             831984899981378643998
Q gi|254780365|r  246 SERHDFLAYHFKGHTYDCGSK  266 (299)
Q Consensus       246 ~~~~~v~a~~~~g~w~DiG~~  266 (299)
T Consensus       216 ~~~g~L~aY~H~GFW~PMDTL  236 (256)
T TIGR02623       216 AQRGELSAYEHSGFWQPMDTL  236 (256)
T ss_pred             HHCCCCEEEEECCCCCCCHHH
T ss_conf             744881378517756852225