HHsearch alignment for GI: 254780365 and conserved domain: TIGR02623
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=100.00 E-value=4.8e-40 Score=266.40 Aligned_cols=232 Identities=20% Similarity=0.315 Sum_probs=190.4
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf 89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA 88 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~ 88 (299)
T Consensus 2 KaViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkGy~IKeyF~-NY~l~~SDvT~~l~~ 80 (256)
T TIGR02623 2 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKGYVIKEYFA-NYFLHMSDVTIDLED 80 (256)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECC-CCEEECCEEEEEECC
T ss_conf 3799717864432243535897607767963778899999752833027885343322010010-632311316787515
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEE
Q ss_conf 00113441124857998433342334665421101122-3333111278644454433221122212234322--00112
Q gi|254780365|r 89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG-DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAV 165 (299)
Q Consensus 89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~-de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~--~vi~~ 165 (299)
T Consensus 81 n~~~~H~~~~EPW~VTLvDTG~~t~TGGRl~Rv~~~~~~d~~Fc~TYGDGv~~~~-----I~~~~~~H~~~g~~AT~tAv 155 (256)
T TIGR02623 81 NTIEVHEKRAEPWRVTLVDTGESTQTGGRLKRVREYLEDDEAFCLTYGDGVADID-----IKALIAFHRKHGKKATVTAV 155 (256)
T ss_pred CEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC-----HHHHHHHHHHCCCCEEEEEE
T ss_conf 7045312138971688885687766783278899984378768987158503325-----89999998862980678860
Q ss_pred EECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 43285443313310013333335300000025778886734233020200272331100012266676750037899999
Q gi|254780365|r 166 SECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKL 245 (299)
Q Consensus 166 ~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l 245 (299)
T Consensus 156 ~P-----PGRfGaL~~~~~------~V~~F~EKP~gd~---g~iNGGFFVL~P~V~d~I~~D~~~wE~------~~L~~L 215 (256)
T TIGR02623 156 QP-----PGRFGALELEGE------SVTSFQEKPLGDG---GLINGGFFVLNPSVLDLIDGDATVWES------EPLETL 215 (256)
T ss_pred CC-----CCCEEEEEECCC------CEEEECCCCCCCC---EEEECCEEEECCCEEEEECCCCEEECC------HHHHHH
T ss_conf 78-----883023677255------1111014748898---168065687483202022488502010------378999
Q ss_pred HHCCCEEEEEEEEEEEECCCH
Q ss_conf 831984899981378643998
Q gi|254780365|r 246 SERHDFLAYHFKGHTYDCGSK 266 (299)
Q Consensus 246 ~~~~~v~a~~~~g~w~DiG~~ 266 (299)
T Consensus 216 ~~~g~L~aY~H~GFW~PMDTL 236 (256)
T TIGR02623 216 AQRGELSAYEHSGFWQPMDTL 236 (256)
T ss_pred HHCCCCEEEEECCCCCCCHHH
T ss_conf 744881378517756852225