HHsearch alignment for GI: 254780365 and conserved domain: TIGR03310

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.61  E-value=1.1e-15  Score=116.35  Aligned_cols=179  Identities=15%  Similarity=0.242  Sum_probs=114.5

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCEE
Q ss_conf             99956888833432440888333568836279999999997899889998135544410100117454445654187000
Q gi|254780365|r   10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKAE   89 (299)
Q Consensus        10 avIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~~   89 (299)
T Consensus         2 AIILAaG~S~Rm-----G~~K~Ll~~~g~~ll~~~i~~~~~~~~~~vivv~~~~~~~~~~~~~~----------------   60 (188)
T TIGR03310         2 AIILAAGLSSRM-----GQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN----------------   60 (188)
T ss_pred             EEEECCCCCCCC-----CCCCCCCEECCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCC----------------
T ss_conf             699889876659-----88900688898329999999998569996699827837899998626----------------


Q ss_pred             ECCCCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             011344112485799843334-2334665421101122-33331112786444544332211222122343220011243
Q gi|254780365|r   90 LTLLAESIPSIGNAVFTWQYE-RKGLGHAVWCARNIIG-DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSE  167 (299)
Q Consensus        90 ~~~~~~~~~~~~~i~~v~Q~~-p~Gtg~Ai~~a~~~i~-de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~vi~~~~  167 (299)
T Consensus        61 --------~~~--~~~v~n~~~~~G~~~si~~gl~~~~~~~~~li~~~D~P~l---~~~~i~~L~~~~~~~~~~iv~p--  125 (188)
T TIGR03310        61 --------HSN--ITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFV---TPDIIQLLLEAFALKNDEIVVP--  125 (188)
T ss_pred             --------CCC--CCEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC---CHHHHHHHHHHHHHCCCCCEEE--
T ss_conf             --------689--6265486556780899999997065788599971887889---9999999999998579961734--


Q ss_pred             CCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             28544331331001333333530000002577888673423302020027233110001226667675003789999983
Q gi|254780365|r  168 CDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE  247 (299)
Q Consensus       168 v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~  247 (299)
T Consensus       126 -------~~~-------------------g~~g~Pv-----------lf~~~~~~~L~~l~gd--~G-------~r~ll~  159 (188)
T TIGR03310       126 -------LYK-------------------GKRGHPV-----------LFPRKLFPELLALTGD--TG-------GRQILR  159 (188)
T ss_pred             -------CCC-------------------CCCCCCE-----------EECHHHHHHHHHCCCC--CC-------HHHHHH
T ss_conf             -------559-------------------9536766-----------8779999999844388--03-------899998


Q ss_pred             CC--CEEEEEEE--EEEEECCCHHHHH
Q ss_conf             19--84899981--3786439988999
Q gi|254780365|r  248 RH--DFLAYHFK--GHTYDCGSKKGFV  270 (299)
Q Consensus       248 ~~--~v~a~~~~--g~w~DiG~~~~yl  270 (299)
T Consensus       160 ~~~~~~~~v~~~d~~~~~DiDTpeD~~  186 (188)
T TIGR03310       160 ELPHEVKYVEVKDPGILFDIDTPEDYQ  186 (188)
T ss_pred             HCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf             480676999728989041899999996