HHsearch alignment for GI: 254780365 and conserved domain: cd02508
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=100.00 E-value=1.8e-40 Score=268.95 Aligned_cols=195 Identities=20% Similarity=0.253 Sum_probs=152.1
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCE-EHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf 99956888833432440888333568836-27999999999789988999813554441010011745444565418700
Q gi|254780365|r 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDR-PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA 88 (299)
Q Consensus 10 avIlAaG~GtRl~P~T~~~pKpllpi~~k-piI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~ 88 (299)
T Consensus 1 AvIlagG~GtRL~pLT~~~PKp~lpi~gk~~iId~~l~~l~~~Gi~~i~i~~~y~~~~i~~hl~~g~~~~~----~~~~~ 76 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL----DRKNG 76 (200)
T ss_pred CEEECCCCCCCCHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCC----CCCCC
T ss_conf 98957888863625447997413088991620799999887679767998345358999999856401257----65668
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 001134411248579984333423346654211011223---33311127864445443322112221223432200112
Q gi|254780365|r 89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD---NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAV 165 (299)
Q Consensus 89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~d---e~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~vi~~ 165 (299)
T Consensus 77 gi~i~----~---~~~~~~~~~~~Gt~~~i~~~~~~l~~~~~~~~lv~ngD~l~~~D-----~~~~l~~H~~~~a~~Ti~ 144 (200)
T cd02508 77 GLFIL----P---PQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMD-----YREMLDFHIESGADITVV 144 (200)
T ss_pred CEEEE----E---CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEEECC-----HHHHHHHHHHCCCCEEEE
T ss_conf 58996----3---13336876553478999999998721788729997699787069-----999999998769998999
Q ss_pred EECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHH-HHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 43285443313310013333335300000025778886734233020200272331-10001226667675003789999
Q gi|254780365|r 166 SECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIF-SILNDWKENEGKGEIQLTDSMRK 244 (299)
Q Consensus 166 ~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~-~~L~~~~~~~~~gE~~ltD~i~~ 244 (299)
T Consensus 145 ~-----------------------------------------~in~GiYi~~~~~l~~~l~~~~~~~-~-~d~~~d~ip~ 181 (200)
T cd02508 145 Y-----------------------------------------KASMGIYIFSKDLLIELLEEDAADG-S-HDFGKDIIPA 181 (200)
T ss_pred E-----------------------------------------EEECEEEEEEHHHHHHHHHHHCCCC-C-CCCHHHHHHH
T ss_conf 9-----------------------------------------8504899980899999998632467-6-7558999999
Q ss_pred HHHCCCEEEEEEEEEEEEC
Q ss_conf 9831984899981378643
Q gi|254780365|r 245 LSERHDFLAYHFKGHTYDC 263 (299)
Q Consensus 245 l~~~~~v~a~~~~g~w~Di 263 (299)
T Consensus 182 l~~~~~v~~y~~~gyw~DI 200 (200)
T cd02508 182 MLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHCCCEEEEECCCEEECC
T ss_conf 9603988999668857494