HHsearch alignment for GI: 254780365 and conserved domain: cd02538
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=0 Score=399.07 Aligned_cols=232 Identities=22% Similarity=0.371 Sum_probs=194.9
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 8999568888334324408883335688362799999999978998899981355-444101001174544456541870
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG-KGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~-k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 2 kavILAgG~GtRL~PlT~~~PKpLlpi~~kPli~~~l~~l~~~Gi~~i~iv~~~~~~~~~~~~~~~-------------- 67 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-------------- 67 (240)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEECCEEEHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHC--------------
T ss_conf 099988878667873237987432779999718999999998599623100234269999999744--------------
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf 00011344112485799843334233466542110112233331112786444544332211222122343220-01124
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVS 166 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~ 166 (299)
T Consensus 68 --------~~~~~~~i~y~~e~~~~Gt~~al~~a~~~~~~~~~~v~~gD~i~~~~~----~~~~l~~~~~~~~~~ti~~~ 135 (240)
T cd02538 68 --------GSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQG----LSPILQRAAAQKEGATVFGY 135 (240)
T ss_pred --------CCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCC----HHHHHHHHHHCCCCCEEEEE
T ss_conf --------763752799999862686313788888762898734443874010656----89999999966688478777
Q ss_pred ECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 32854433133100133333353000000257788867342330202002723311000122666767500378999998
Q gi|254780365|r 167 ECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246 (299)
Q Consensus 167 ~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~ 246 (299)
T Consensus 136 ~v~--~~~~yGvv~~d~~-----~~v~~~~EKP~--~~~s~~~~~GiYi~~~~i~~~i~~~~~~~-~ge~~i~d~~~~~i 205 (240)
T cd02538 136 EVN--DPERYGVVEFDEN-----GRVLSIEEKPK--KPKSNYAVTGLYFYDNDVFEIAKQLKPSA-RGELEITDVNNEYL 205 (240)
T ss_pred EEC--CCCCCCCCCCCCC-----CCEEEEEECCC--CCCCCEEEEEEEEECHHHHHHHHHCCCCC-CCEEEHHHHHHHHH
T ss_conf 723--6113672311478-----85789888999--99988799999998989999998589999-99075889999999
Q ss_pred HCCCEEEEE--EEEEEEECCCHHHHHHHHHHH
Q ss_conf 319848999--813786439988999999998
Q gi|254780365|r 247 ERHDFLAYH--FKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 247 ~~~~v~a~~--~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 206 ~~g~~~~~~~~~~~~W~DiGtpe~~~~An~~i 237 (240)
T cd02538 206 EKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HCCCCEEEEECCCCEEEECCCHHHHHHHHHHH
T ss_conf 85997399968998089799999999999889