HHsearch alignment for GI: 254780365 and conserved domain: cd02538

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00  E-value=0  Score=399.07  Aligned_cols=232  Identities=22%  Similarity=0.371  Sum_probs=194.9

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf             8999568888334324408883335688362799999999978998899981355-444101001174544456541870
Q gi|254780365|r    9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG-KGLIKDYFDIQFELEQSLRKRNKK   87 (299)
Q Consensus         9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~-k~~I~~~f~~~~~~~~~l~~~~~~   87 (299)
T Consensus         2 kavILAgG~GtRL~PlT~~~PKpLlpi~~kPli~~~l~~l~~~Gi~~i~iv~~~~~~~~~~~~~~~--------------   67 (240)
T cd02538           2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD--------------   67 (240)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEECCEEEHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHC--------------
T ss_conf             099988878667873237987432779999718999999998599623100234269999999744--------------


Q ss_pred             EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf             00011344112485799843334233466542110112233331112786444544332211222122343220-01124
Q gi|254780365|r   88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVS  166 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~  166 (299)
T Consensus        68 --------~~~~~~~i~y~~e~~~~Gt~~al~~a~~~~~~~~~~v~~gD~i~~~~~----~~~~l~~~~~~~~~~ti~~~  135 (240)
T cd02538          68 --------GSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQG----LSPILQRAAAQKEGATVFGY  135 (240)
T ss_pred             --------CCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCEECCCC----HHHHHHHHHHCCCCCEEEEE
T ss_conf             --------763752799999862686313788888762898734443874010656----89999999966688478777


Q ss_pred             ECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             32854433133100133333353000000257788867342330202002723311000122666767500378999998
Q gi|254780365|r  167 ECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS  246 (299)
Q Consensus       167 ~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~  246 (299)
T Consensus       136 ~v~--~~~~yGvv~~d~~-----~~v~~~~EKP~--~~~s~~~~~GiYi~~~~i~~~i~~~~~~~-~ge~~i~d~~~~~i  205 (240)
T cd02538         136 EVN--DPERYGVVEFDEN-----GRVLSIEEKPK--KPKSNYAVTGLYFYDNDVFEIAKQLKPSA-RGELEITDVNNEYL  205 (240)
T ss_pred             EEC--CCCCCCCCCCCCC-----CCEEEEEECCC--CCCCCEEEEEEEEECHHHHHHHHHCCCCC-CCEEEHHHHHHHHH
T ss_conf             723--6113672311478-----85789888999--99988799999998989999998589999-99075889999999


Q ss_pred             HCCCEEEEE--EEEEEEECCCHHHHHHHHHHH
Q ss_conf             319848999--813786439988999999998
Q gi|254780365|r  247 ERHDFLAYH--FKGHTYDCGSKKGFVLANIAF  276 (299)
Q Consensus       247 ~~~~v~a~~--~~g~w~DiG~~~~yl~A~~~~  276 (299)
T Consensus       206 ~~g~~~~~~~~~~~~W~DiGtpe~~~~An~~i  237 (240)
T cd02538         206 EKGKLSVELLGRGFAWLDTGTHESLLEASNFV  237 (240)
T ss_pred             HCCCCEEEEECCCCEEEECCCHHHHHHHHHHH
T ss_conf             85997399968998089799999999999889