HHsearch alignment for GI: 254780365 and conserved domain: cd04189

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00  E-value=0  Score=370.61  Aligned_cols=230  Identities=28%  Similarity=0.459  Sum_probs=200.2

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf             89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r    9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA   88 (299)
Q Consensus         9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~   88 (299)
T Consensus         2 kaiILAaG~GtRl~p~t~~~PK~Ll~i~gkpli~~~i~~l~~~gi~~Iiiv~~~~~~~i~~~~~~~~-------------   68 (236)
T cd04189           2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-------------   68 (236)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCC-------------
T ss_conf             0999888687688700079980203899860999999999986995899985414122012234666-------------


Q ss_pred             EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf             0011344112485799843334233466542110112233331112786444544332211222122343220-011243
Q gi|254780365|r   89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVSE  167 (299)
Q Consensus        89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~~  167 (299)
T Consensus        69 ---------~~~~~i~~v~~~~~~Gt~~al~~a~~~l~~~~~iv~~gD~~~~~~-----~~~~~~~~~~~~~~~~i~~~~  134 (236)
T cd04189          69 ---------RFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEG-----ISPLVRDFLEEDADASILLAE  134 (236)
T ss_pred             ---------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCEECCC-----HHHHHHHHHHCCCCCEEEEEE
T ss_conf             ---------478754898621553245787776651489975897279465468-----999999998627861147898


Q ss_pred             CCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             28544331331001333333530000002577888673423302020027233110001226667675003789999983
Q gi|254780365|r  168 CDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE  247 (299)
Q Consensus       168 v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~  247 (299)
T Consensus       135 ~--~~~~~~g~~~~~~~------~v~~i~eK~~~~--~~~~~~~Giy~f~~~i~~~~~~~~~~~-~~e~~i~d~i~~li~  203 (236)
T cd04189         135 V--EDPRRFGVAVVDDG------RIVRLVEKPKEP--PSNLALVGVYAFTPAIFDAISRLKPSW-RGELEITDAIQWLID  203 (236)
T ss_pred             E--ECCCCCCEEEECCC------EEEECCCCCCCC--CCCEEEEEEEEECHHHHHHHHHCCCCC-CCCEEHHHHHHHHHH
T ss_conf             6--24667628997362------354313258898--767599999999989999998479987-881338999999998


Q ss_pred             CC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             19-848999813786439988999999998
Q gi|254780365|r  248 RH-DFLAYHFKGHTYDCGSKKGFVLANIAF  276 (299)
Q Consensus       248 ~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~  276 (299)
T Consensus       204 ~g~~v~~~~~~g~W~Digtpedl~~A~~~l  233 (236)
T cd04189         204 RGRRVGYSIVTGWWKDTGTPEDLLEANRLL  233 (236)
T ss_pred             CCCCEEEEEECCEEEECCCHHHHHHHHHHH
T ss_conf             799889997199799798999999998998