HHsearch alignment for GI: 254780365 and conserved domain: cd04189
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=0 Score=370.61 Aligned_cols=230 Identities=28% Similarity=0.459 Sum_probs=200.2
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCE
Q ss_conf 89995688883343244088833356883627999999999789988999813554441010011745444565418700
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKA 88 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~ 88 (299)
T Consensus 2 kaiILAaG~GtRl~p~t~~~PK~Ll~i~gkpli~~~i~~l~~~gi~~Iiiv~~~~~~~i~~~~~~~~------------- 68 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------------- 68 (236)
T ss_pred EEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCC-------------
T ss_conf 0999888687688700079980203899860999999999986995899985414122012234666-------------
Q ss_pred EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEE
Q ss_conf 0011344112485799843334233466542110112233331112786444544332211222122343220-011243
Q gi|254780365|r 89 ELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVSE 167 (299)
Q Consensus 89 ~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~~ 167 (299)
T Consensus 69 ---------~~~~~i~~v~~~~~~Gt~~al~~a~~~l~~~~~iv~~gD~~~~~~-----~~~~~~~~~~~~~~~~i~~~~ 134 (236)
T cd04189 69 ---------RFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEG-----ISPLVRDFLEEDADASILLAE 134 (236)
T ss_pred ---------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCEECCC-----HHHHHHHHHHCCCCCEEEEEE
T ss_conf ---------478754898621553245787776651489975897279465468-----999999998627861147898
Q ss_pred CCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28544331331001333333530000002577888673423302020027233110001226667675003789999983
Q gi|254780365|r 168 CDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 (299)
Q Consensus 168 v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~ 247 (299)
T Consensus 135 ~--~~~~~~g~~~~~~~------~v~~i~eK~~~~--~~~~~~~Giy~f~~~i~~~~~~~~~~~-~~e~~i~d~i~~li~ 203 (236)
T cd04189 135 V--EDPRRFGVAVVDDG------RIVRLVEKPKEP--PSNLALVGVYAFTPAIFDAISRLKPSW-RGELEITDAIQWLID 203 (236)
T ss_pred E--ECCCCCCEEEECCC------EEEECCCCCCCC--CCCEEEEEEEEECHHHHHHHHHCCCCC-CCCEEHHHHHHHHHH
T ss_conf 6--24667628997362------354313258898--767599999999989999998479987-881338999999998
Q ss_pred CC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 19-848999813786439988999999998
Q gi|254780365|r 248 RH-DFLAYHFKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 248 ~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 204 ~g~~v~~~~~~g~W~Digtpedl~~A~~~l 233 (236)
T cd04189 204 RGRRVGYSIVTGWWKDTGTPEDLLEANRLL 233 (236)
T ss_pred CCCCEEEEEECCEEEECCCHHHHHHHHHHH
T ss_conf 799889997199799798999999998998