RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate
uridylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(299 letters)
>gnl|CDD|31403 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 359 bits (923), Expect = e-100
Identities = 137/294 (46%), Positives = 192/294 (65%), Gaps = 4/294 (1%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
K+RKAV P AGLG RF P +K IPKEML IVD+P+IQY++EEA+ AG+ + + VTGRGK
Sbjct: 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGK 61
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
I+D+FD +ELE +L KR K+ L + SIP + F Q E GLGHAV CA+
Sbjct: 62 RAIEDHFDTSYELENTLEKRGKRELLEEV-RSIPPLVTISFVRQKEPLGLGHAVLCAKPF 120
Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184
+GD PFA+LLPD ++ + C+ MI+LYE+ G +++ V E P+ KYG++ G+
Sbjct: 121 VGDEPFAVLLPDDLVDSEKP--CLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEP 178
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
++ V+ + M+EKP SN I GRY+L P+IF IL + K G GEIQLTD+++K
Sbjct: 179 VEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAG-GEIQLTDAIKK 237
Query: 245 LSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSAL 298
L ++ LAY F+G YDCGSK G++ AN+ FAL R + ++ + LK L+ L
Sbjct: 238 LLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRRPKLGAEFKEYLKELLKEL 291
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 344 bits (884), Expect = 2e-95
Identities = 134/271 (49%), Positives = 176/271 (64%), Gaps = 5/271 (1%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
RKAV P AGLG RF P +K IPKEML IVD+PVIQY++EEA+ AG+ D + VTGRGK I
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAI 60
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
+D+FD +ELE++L K+ K L + I + N + Q E GLGHAV CA+ IGD
Sbjct: 61 EDHFDRSYELEETLEKKGKTDLLEEVRI-ISDLANIHYVRQKEPLGLGHAVLCAKPFIGD 119
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187
PFA+LL D ++ E C+ +I+ YEK GA+++AV E P+ KYG+V+ K ID
Sbjct: 120 EPFAVLLGDDLIDS--KEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGIVKGEK-IDG 176
Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247
VF + ++EKP SN I GRY+L PDIF IL + K +G GEIQLTD++ KL E
Sbjct: 177 DVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKG-GEIQLTDAIAKLLE 235
Query: 248 RHDFLAYHFKGHTYDCGSKKGFVLANIAFAL 278
AY F+G YDCG+K G++ A + FAL
Sbjct: 236 EEPVYAYVFEGKRYDCGNKLGYLKATVEFAL 266
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 131 bits (332), Expect = 2e-31
Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 42/257 (16%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
AV AG G R P++ PK +L I +P+++Y+IE AG+ + + V G I++
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEE 60
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129
YF K E + Q E G AV A + +GD+
Sbjct: 61 YFG-------DGSKFGVNIE---------------YVVQEEPLGTAGAVRNAEDFLGDDD 98
Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGA-NILAVSECDPQLSCKYGMVQVGKAIDHQ 188
F ++ D++ E +++ + ++GA +AV E + +YG+V++
Sbjct: 99 FLVVNGDVLTDLDLSE-----LLRFHREKGADATIAVKEVEDPS--RYGVVELD-----D 146
Query: 189 VFHISDMIEKPDSSTFISNFFIN-GRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247
++ +EKP + N G YI P+I + E +GE +LTD++ L E
Sbjct: 147 DGRVTRFVEKPTLPE---SNLANAGIYIFEPEILDYI---PEILPRGEDELTDAIPLLIE 200
Query: 248 RHDFLAYHFKGHTYDCG 264
Y G+ D G
Sbjct: 201 EGKVYGYPVDGYWLDIG 217
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of
glucose-1-phosphate thymidylyltransferase. This family
is the long form of Glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The long form, which has an extra
50 amino acids c-terminal, is found in many species for
which it serves as a sugar-activating enzyme for
antibiotic biosynthesis and or other, unknown pathways,
and in which dTDP-L-rhamnose is not necessarily
produced.The long from enzymes also have a left-handed
parallel helix domain at the c-terminus, whereas, th
eshort form enzymes do not have this domain. The
homotetrameric, feedback inhibited short form is found
in numerous bacterial species that produce
dTDP-L-rhamnose.
Length = 236
Score = 112 bits (282), Expect = 2e-25
Identities = 70/275 (25%), Positives = 113/275 (41%), Gaps = 56/275 (20%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
K + G G R P++ PK+++ + +P+IQY IE+ EAG+ D V G IK
Sbjct: 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIK 61
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIG-NAVFTWQYERKGLGHAVWCARNIIGD 127
+ G + Q E GL HAV AR+ +GD
Sbjct: 62 EALG-----------------------DGSRFGVRITYILQEEPLGLAHAVLAARDFLGD 98
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKE------GANILAVSECDPQLSCKYGMVQV 181
PF + L G+N + I ++ A+IL DP+ ++G+ V
Sbjct: 99 EPFVVYL---------GDNLIQEGISPLVRDFLEEDADASILLAEVEDPR---RFGVAVV 146
Query: 182 --GKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLT 239
G+ I ++EKP SN + G Y P IF ++ K + +GE+++T
Sbjct: 147 DDGR--------IVRLVEKPK--EPPSNLALVGVYAFTPAIFDAISRLKPSW-RGELEIT 195
Query: 240 DSMRKLSER-HDFLAYHFKGHTYDCGSKKGFVLAN 273
D+++ L +R G D G+ + + AN
Sbjct: 196 DAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
>gnl|CDD|31402 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 286
Score = 106 bits (265), Expect = 1e-23
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 41/244 (16%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR-GKGL 66
K V G G R P+++V+PK++L + D+P+I Y +E + AG+ D + V G K
Sbjct: 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPT 60
Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126
K+ + ++T + Q E GL HAV A + +G
Sbjct: 61 FKELLG---------DGSDFGVDIT-------------YAVQPEPDGLAHAVLIAEDFVG 98
Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKE--GANILAVSECDPQLSCKYGMVQVGKA 184
D+ F L L D I ++ ++ +++ + +E GA IL DP +YG+V+ +
Sbjct: 99 DDDFVLYLGDNIF-----QDGLSELLEHFAEEGSGATILLYEVDDPS---RYGVVEFDED 150
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
+ + EKP SN + G Y P +F + K + +GE+++TD++
Sbjct: 151 -----GKVIGLEEKPKEP--KSNLAVTGLYFYDPSVFEAIKQIKPSA-RGELEITDAIDL 202
Query: 245 LSER 248
E+
Sbjct: 203 YIEK 206
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 92.7 bits (230), Expect = 1e-19
Identities = 61/265 (23%), Positives = 111/265 (41%), Gaps = 36/265 (13%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KAV G G R P++ PK +L I +P+I+YV+E AG+ + V V G I+
Sbjct: 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIE 62
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
+YF L + + + E G A+ A +++G +
Sbjct: 63 EYFGDGEGLGVRIT----------------------YVVEKEPLGTAGALKNALDLLGGD 100
Query: 129 PFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQ 188
F +L D++ + ++ +++ ++K+GA S ++G+V+ D
Sbjct: 101 DFLVLNGDVLT-----DLDLSELLEFHKKKGALATIALTRVLDPS-EFGVVET----DDG 150
Query: 189 VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSER 248
+ + EKP SN G YI P++F + K E +L ++ ++
Sbjct: 151 DGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIE--KGERFDFEEELLPAL--AAKG 206
Query: 249 HDFLAYHFKGHTYDCGSKKGFVLAN 273
D Y F+G+ D G+ + + AN
Sbjct: 207 EDVYGYVFEGYWLDIGTPEDLLEAN 231
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of
glucose-1-phosphate thymidylyltransferase. This family
is the short form of glucose-1-phosphate
thymidylyltransferase. Glucose-1-phosphate
thymidylyltransferase catalyses the formation of
dTDP-glucose, from dTTP and glucose 1-phosphate. It is
the first enzyme in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.There are two forms of Glucose-1-phosphate
thymidylyltransferase in bacteria and archeae; short
form and long form. The homotetrameric, feedback
inhibited short form is found in numerous bacterial
species that produce dTDP-L-rhamnose. The long form,
which has an extra 50 amino acids c-terminal, is found
in many species for which it serves as a
sugar-activating enzyme for antibiotic biosynthesis and
or other, unknown pathways, and in which dTDP-L-rhamnose
is not necessarily produced.
Length = 240
Score = 65.7 bits (161), Expect = 1e-11
Identities = 58/239 (24%), Positives = 101/239 (42%), Gaps = 46/239 (19%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG---- 63
K + G G R +P++KV+ K++L + D+P+I Y + + AG+ + + ++
Sbjct: 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPL 60
Query: 64 -KGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122
K L+ D D+ + + Q + GL A
Sbjct: 61 FKELLGDGSDLGIRIT--------------------------YAVQPKPGGLAQAFIIGE 94
Query: 123 NIIGDNPFALLLPDMIMSPLEGENCMANMIKLYE-KEGANILAVSECDPQLSCKYGMVQV 181
IGD+P L+L D I G+ + + KEGA + DP+ +YG+V+
Sbjct: 95 EFIGDDPVCLILGDNI---FYGQGLSPILQRAAAQKEGATVFGYEVNDPE---RYGVVEF 148
Query: 182 GKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
+ + +V I EKP SN+ + G Y D+F I K + +GE+++TD
Sbjct: 149 DE--NGRVLSI---EEKP--KKPKSNYAVTGLYFYDNDVFEIAKQLKPS-ARGELEITD 199
>gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 62.2 bits (152), Expect = 2e-10
Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 36/260 (13%)
Query: 16 GLGMRFFPISKVIPKEMLAIVDR-PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74
G G R +P+++ + K ++ ++D+ P+IQY + + AG+ + + + + + +
Sbjct: 8 GSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQ---------EHR 58
Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD--NPFAL 132
F + + L K L + A+ Q E +G AV A + +GD L
Sbjct: 59 FLVAEQLG-DGSKFGLQVTY--------AL---QPEPRGTAPAVALAADFLGDDDPELVL 106
Query: 133 LLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHI 192
+L + ++ E + V DP YG+++ + + +V
Sbjct: 107 VLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPT---GYGVIEFDE--NGRVIRF 161
Query: 193 SDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSERHD-F 251
+EKPD SN+ G Y + +F L + + +GE ++TD++ E D
Sbjct: 162 ---VEKPDLPK-ASNYASMGIYFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLD 217
Query: 252 LAYHFKGHTY--DCGSKKGF 269
LA+ F+G+ Y D G+
Sbjct: 218 LAFLFRGYAYWSDVGTWDSL 237
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 54.0 bits (130), Expect = 5e-08
Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 48/241 (19%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
AV AG G R S +PK + + +P++++VI+ A G D V V G G +
Sbjct: 3 LSAVILAAGKGTRMK--SD-LPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQV 59
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
+ E++ + F Q E+ G GHAV A + D
Sbjct: 60 R--------------------------EALAERDDVEFVLQEEQLGTGHAVLQALPALAD 93
Query: 128 NPFALLL---PDMIMSPLEGENCMANMIKLYEKEGAN--ILAVSECDPQLSCKYGMVQVG 182
+ +L D+ PL + ++ + GA +L DP YG +
Sbjct: 94 DYDGDVLVLYGDV---PLITAETLEELLAAHPAHGAAATVLTAELDDPT---GYGRIVRD 147
Query: 183 KAIDHQVFHISDMIEKPDSSTFISNF-FIN-GRYILH-PDIFSILNDWKENEGKGEIQLT 239
+ +V I +E+ D+S IN G Y + L N +GE LT
Sbjct: 148 G--NGEVTAI---VEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLT 202
Query: 240 D 240
D
Sbjct: 203 D 203
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 220
Score = 54.1 bits (131), Expect = 5e-08
Identities = 52/245 (21%), Positives = 94/245 (38%), Gaps = 65/245 (26%)
Query: 16 GLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQF 75
G G R P+++ PK ML + +P+++ +I+ + G +F +I+DYF
Sbjct: 7 GKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYF---- 62
Query: 76 ELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFAL-LL 134
K ++ E K LG A G AL LL
Sbjct: 63 ---GDGSKFGVN-----------------ISYVREDKPLGTA--------G----ALSLL 90
Query: 135 PDMIMSPLEGENC-------MANMIKLYEKEGANI-LAVSECDPQLSCKYGMVQVGKAID 186
P+ P N +++ +++ A+ + V E + Q+ YG+V+
Sbjct: 91 PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVP--YGVVETEGG-- 146
Query: 187 HQVFHISDMIEKPDSSTFISNFFIN-GRYILHPDIFSILNDWKENEGKGEIQLTDSMRKL 245
I+ + EKP +F +N G Y+L P++ ++ +NE + D + KL
Sbjct: 147 ----RITSIEEKP-----THSFLVNAGIYVLEPEVLDLI---PKNE---FFDMPDLIEKL 191
Query: 246 SERHD 250
+
Sbjct: 192 IKEGK 196
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In addition
cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a key
enzyme in the prokaryotic choline metabolism pathway. It
has been hypothesized to consist of a choline transport
system, a choline kinase, CTP:phosphocholine
cytidylyltransferase, and a choline phosphotransferase
that transfers P-Cho from CDP-Cho to either lipoteichoic
acid or lipopolysaccharide.
Length = 229
Score = 50.7 bits (122), Expect = 5e-07
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 24/119 (20%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
A+ AG G R P+++ PK +L I +P+++ IE EAG+ D V VTG K I++
Sbjct: 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEE 60
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
K + V+ Y ++++ AR+ + ++
Sbjct: 61 LLK-------------KYPNIKF-----------VYNPDYAETNNIYSLYLARDFLDED 95
>gnl|CDD|34365 COG4750, LicC, CTP:phosphocholine cytidylyltransferase involved
in choline phosphorylation for cell surface LPS
epitopes [Cell envelope biogenesis, outer membrane].
Length = 231
Score = 50.3 bits (120), Expect = 7e-07
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
A+ AGLG RF P+++ PK +L + P+I+ IE+ EAG+ D V G +
Sbjct: 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVV----GYL 56
Query: 68 KDYFD 72
K+ F+
Sbjct: 57 KEQFE 61
>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
pyrophosphorylase/mannose-1-phosphate
guanylyltransferase [Cell wall/membrane/envelope
biogenesis].
Length = 371
Score = 49.1 bits (117), Expect = 1e-06
Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 43/268 (16%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KA+ + G G R P++ PK ++ ++P+I + IE + +G+T V T
Sbjct: 11 KAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLAT-------- 62
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII--- 125
Q+ E R +K L E + + + E G + AR+ +
Sbjct: 63 -----QYNSESLNRHLSKAYGKELGVEIL-------ASTETEPLGTAGPLALARDFLWVF 110
Query: 126 GDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI-LAVSECDPQLSCKYGMVQVGKA 184
D PF +L D+I M++ + GA I + V++ D KYG+V
Sbjct: 111 EDAPFFVLNSDVIC-----RMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVV---- 159
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
ID + +EKP +SN G YIL+P++ + + K EI
Sbjct: 160 IDEDTGRVIRFVEKP--KDLVSNKINAGIYILNPEVLDRILLRPTSIEK-EI-----FPA 211
Query: 245 LSERHDFLAYHFKGHTYDCGSKKGFVLA 272
++E H A+ G D G K F+
Sbjct: 212 MAEEHQLYAFDLPGFWMDIGQPKDFLTG 239
>gnl|CDD|36673 KOG1460, KOG1460, KOG1460, GDP-mannose pyrophosphorylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis, Posttranslational
modification, protein turnover, chaperones].
Length = 407
Score = 48.0 bits (114), Expect = 3e-06
Identities = 59/276 (21%), Positives = 103/276 (37%), Gaps = 41/276 (14%)
Query: 9 KAVFPIAG--LGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALE-AGLTDFVFVTGRGKG 65
KAV + G G RF P+S +PK + I P+I + I + +GL + + V +
Sbjct: 4 KAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEER 63
Query: 66 LIKDYFD-IQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN- 123
+ D+ IQ E + +R + + G ++ R+
Sbjct: 64 VFTDFISAIQQEFKVPVR----------------------YLREDNPLGTAGGLYHFRDQ 101
Query: 124 IIGDNP--FALLLPDMIMS-PLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
I+ +P +L D+ S PL+ M G L V++ + + +G +
Sbjct: 102 ILAGSPSAVFVLNADVCCSFPLQD---MLE--AHRRYGGIGTLLVTKVSREQASNFGCL- 155
Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
V +V H +EKP STF+S+ G Y+ P+IF+ + + D
Sbjct: 156 VEDPSTGEVLH---YVEKP--STFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKD 210
Query: 241 SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAF 276
DF+ + GSK+ + F
Sbjct: 211 LPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDF 246
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 45.2 bits (108), Expect = 2e-05
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 48/233 (20%)
Query: 15 AGLG--MRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFD 72
AG G M+ S +PK + + +P++++V++ A G V V G G +K
Sbjct: 6 AGKGTRMK----SD-LPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKA-- 58
Query: 73 IQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN-IIGDNPFA 131
LA N F Q E+ G GHAV A +
Sbjct: 59 --------------------LANP-----NVEFVLQEEQLGTGHAVKQALPALKDFEGDV 93
Query: 132 LLLP-DMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVF 190
L+L D+ PL + +++ + + GA++ V + + YG + I
Sbjct: 94 LVLYGDV---PLITPETLQRLLEAHREAGADV-TVLTAELEDPTGYGRI-----IRDGNG 144
Query: 191 HISDMIEKPDSSTF-ISNFFIN-GRYILH-PDIFSILNDWKENEGKGEIQLTD 240
+ ++E+ D++ + +N G Y +F L N +GE LTD
Sbjct: 145 KVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 44.9 bits (107), Expect = 2e-05
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 16 GLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFD 72
GLG R + K +PK + + RP ++Y++E G++ V G I++YF
Sbjct: 7 GLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFG 63
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit
of the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTD-FVFVTGRGKGLI 67
+AV G G R +P++ IPK +L + ++P+I Y ++ +AG D V V + I
Sbjct: 2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 68 KDYFD 72
Y
Sbjct: 62 STYLR 66
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like
is predicted to have glycosyltransferase activity.
N-terminal domain of eEIF-2B epsilon and gamma,
subunits of eukaryotic translation initiators, is a
subfamily of glycosyltranferase 2 and is predicted to
have glycosyltranferase activity. eIF-2B is a guanine
nucleotide-exchange factor which mediates the exchange
of GDP (bound to initiation factor eIF2) for GTP,
generating active eIF2.GTP complex. EIF2B is a complex
multimeric protein consisting of five subunits named
alpha, beta, gamma, delta and epsilon. Subunit epsilon
shares sequence similarity with gamma subunit, and with
a family of bifunctional nucleotide-binding enzymes
such as ADP-glucose pyrophosphorylase, suggesting that
epsilon subunit may play roles in nucleotide binding
activity. In yeast, eIF2B gamma enhances the activity
of eIF2B-epsilon leading to the idea that these
subunits form the catalytic subcomplex.
Length = 216
Score = 44.6 bits (106), Expect = 3e-05
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTD-FVFVT 60
G G RF P++ IPK +L + + P+I Y +E +AG+ + FV
Sbjct: 8 DGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCC 54
>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 43.3 bits (102), Expect = 8e-05
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 28/137 (20%)
Query: 6 KVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT-GRGK 64
KAV AG G R P IPK ++ + R +I IE +AG+T+FV VT G
Sbjct: 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRA 58
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
L++++ L+K A++ V YE+ G+++ A++
Sbjct: 59 DLVEEF----------LKKYPFNAKI-------------VINSDYEKTNTGYSLLLAKDY 95
Query: 125 IGDNPFALLLPDMIMSP 141
+ F L++ D + P
Sbjct: 96 MDGR-FILVMSDHVYEP 111
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the
M1P-guanylyltransferase B-isoform like proteins.
GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain and a C-terminal Lefthanded-beta-Helix
fold domain. GDP-d-mannose is the activated form of
mannose for formation of cell wall lipoarabinomannan and
various mannose-containing glycolipids and
polysaccharides. The function of GDP-mannose
pyrophosphorylase is essential for cell wall integrity,
morphogenesis and viability. Repression of GDP-mannose
pyrophosphorylase in yeast leads to phenotypes, such as
cell lysis, defective cell wall, and failure of
polarized growth and cell separation.
Length = 233
Score = 43.0 bits (102), Expect = 1e-04
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 51/222 (22%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KA+ + G G R P++ +PK ++ ++P+I++ IE +AG+ + + L
Sbjct: 2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEII--------LAV 53
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHA--VWCARNIIG 126
+Y ++ L++ KK + + SI E + LG A + AR+++G
Sbjct: 54 NYR--PEDMVPFLKEYEKKLGIKI----TFSI---------ETEPLGTAGPLALARDLLG 98
Query: 127 --DNPFALLLPDMIMS-PLEGENCMANMIKLYEKEGAN--ILA--VSECDPQLSCKYGMV 179
D PF +L D+I PL A ++ ++K GA IL V + KYG+V
Sbjct: 99 DDDEPFFVLNSDVICDFPL------AELLDFHKKHGAEGTILVTKVEDPS-----KYGVV 147
Query: 180 QVGKAIDHQVFHISDMIEKPDSSTFISNFFIN-GRYILHPDI 220
D I +EKP F+ N IN G YIL+P +
Sbjct: 148 ----VHDENTGRIERFVEKP--KVFVGNK-INAGIYILNPSV 182
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member
of the nucleotidyl transferase family. This is a
subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 41.8 bits (99), Expect = 2e-04
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 28/128 (21%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74
AGLG R P++ PK ++ + +P+I + ++ AG+ V T I+ +
Sbjct: 7 AGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHL--- 63
Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGL---GHAVWCARNIIGDNPFA 131
+ + L + T E L G + A ++GD PF
Sbjct: 64 ---------GDSRFGLRI-------------TISDEPDELLETGGGIKKALPLLGDEPFL 101
Query: 132 LLLPDMIM 139
++ D++
Sbjct: 102 VVNGDILW 109
>gnl|CDD|133040 cd04197, eIF-2B_epsilon_N, The N-terminal domain of epsilon
subunit of the eIF-2B is a subfamily of
glycosyltransferase 2. N-terminal domain of epsilon
subunit of the eukaryotic translation initiation factor
2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange
factor which mediates the exchange of GDP (bound to
initiation factor eIF2) for GTP, generating active
eIF2.GTP complex. EIF2B is a complex multimeric protein
consisting of five subunits named alpha, beta, gamma,
delta and epsilon. Subunit epsilon shares sequence
similarity with gamma subunit, and with a family of
bifunctional nucleotide-binding enzymes such as
ADP-glucose pyrophosphorylase, suggesting that epsilon
subunit may play roles in nucleotide binding activity.
In yeast, eIF2B gamma enhances the activity of
eIF2B-epsilon leading to the idea that these subunits
form the catalytic subcomplex.
Length = 217
Score = 39.9 bits (94), Expect = 9e-04
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 20 RFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYF 71
RF P++K P+ +L + + P+I Y +E G+ + IK+Y
Sbjct: 13 RFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYI 64
>gnl|CDD|30797 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate
transport and metabolism].
Length = 393
Score = 38.2 bits (89), Expect = 0.003
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 151 MIKLYEKEGANI-LAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFF 209
M+ + + GA++ +AV E + + ++G++ V + I + +EKP ++
Sbjct: 138 MLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN-----GRIIEFVEKPADGPPSNSLA 192
Query: 210 INGRYILHPDI-FSILNDWKENEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKG 268
G YI + D+ +L + ++ D + KL ER AY F G+ D G+
Sbjct: 193 SMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDS 252
Query: 269 FVLANIAF 276
+ AN+
Sbjct: 253 YYEANMDL 260
>gnl|CDD|133026 cd04183, GT2_BcE_like, GT2_BcbE_like is likely involved in the
biosynthesis of the polysaccharide capsule.
GT2_BcbE_like: The bcbE gene is one of the genes in
the capsule biosynthetic locus of Pasteurella
multocida. Its deducted product is likely involved in
the biosynthesis of the polysaccharide capsule, which
is found on surface of a wide range of bacteria. It is
a subfamily of Glycosyltransferase Family GT2, which
includes diverse families of glycosyltransferases with
a common GT-A type structural fold, which has two
tightly associated beta/alpha/beta domains that tend to
form a continuous central sheet of at least eight
beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 231
Score = 38.0 bits (89), Expect = 0.003
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 11 VFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDY 70
+ P+AGLG RF PK ++ + +P+I++VIE + + F+F+ +D
Sbjct: 2 IIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFI-------CRDE 54
Query: 71 FDIQFELEQSLRKRNKKAELTLLAE 95
+ +F L++SL+ A + L
Sbjct: 55 HNTKFHLDESLKLLAPNATVVELDG 79
>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of
M1P_guanylyl_A_ like proteins are likely to be a isoform
of GDP-mannose pyrophosphorylase. N-terminal domain of
the M1P-guanylyltransferase A-isoform like proteins:
The proteins of this family are likely to be a isoform
of GDP-mannose pyrophosphorylase. Their sequences are
highly conserved with mannose-1-phosphate
guanyltransferase, but generally about 40-60 bases
longer. GDP-mannose pyrophosphorylase (GTP:
alpha-d-mannose-1-phosphate guanyltransferase) catalyzes
the formation of GDP-d-mannose from GTP and
alpha-d-mannose-1-Phosphate. It contains an N-terminal
catalytic domain that resembles a dinucleotide-binding
Rossmann fold and a C-terminal LbH fold domain.
GDP-d-mannose is the activated form of mannose for
formation of cell wall lipoarabinomannan and various
mannose-containing glycolipids and polysaccharides. The
function of GDP-mannose pyrophosphorylase is essential
for cell wall integrity, morphogenesis and viability.
Repression of GDP-mannose pyrophosphorylase in yeast
leads to phenotypes including cell lysis, defective cell
wall, and failure of polarized growth and cell
separation.
Length = 257
Score = 37.6 bits (88), Expect = 0.004
Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 18 GMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFEL 77
G RF P+S +PK + + +P+I + IE A + D +K+ I F
Sbjct: 11 GTRFRPLSLDVPKPLFPVAGKPMIHHHIEAC--AKVPD-----------LKEVLLIGFYP 57
Query: 78 EQSLRKRNKKAELTLLAESIPSIGNAVFTWQY--ERKGLGHA--VWCARNII-GDNPFAL 132
E A+ E I +Y E K LG A ++ R+ I NP A
Sbjct: 58 ESVFSDFISDAQ----QEFNVPI-------RYLQEYKPLGTAGGLYHFRDQILAGNPSAF 106
Query: 133 LLPDMIMSPLEGENC----MANMIKLYEKEGAN--ILAVSECDPQLSCKYGMVQVGKAID 186
+ L + C + +++ ++K GA+ IL E + + YG + V
Sbjct: 107 FV-------LNADVCCDFPLQELLEFHKKHGASGTILGT-EASREQASNYGCI-VEDPST 157
Query: 187 HQVFHISDMIEKPDSSTFISNFFIN-GRYILHPDIFS-ILNDWKENEGKGEIQLTDSMRK 244
+V H +EKP TF+S+ IN G Y+ P+IF I ++ + + ++ ++
Sbjct: 158 GEVLH---YVEKP--ETFVSD-LINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREG 211
Query: 245 LSER 248
+E
Sbjct: 212 RAEV 215
>gnl|CDD|36675 KOG1462, KOG1462, KOG1462, Translation initiation factor 2B, gamma
subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal
structure and biogenesis].
Length = 433
Score = 35.7 bits (82), Expect = 0.015
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
+AV G G R ++ +PK +L I ++P+I Y + +AG T+ + V + L
Sbjct: 11 QAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKL-- 68
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNA 103
DI+ L ++ + + + + + G A
Sbjct: 69 ---DIESALGSNIDLKKRPDYVEIPTDDNSDFGTA 100
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals.
Thus, CDP-ME synthetase is an attractive targets for
the structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 34.4 bits (80), Expect = 0.038
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
A+ AG G R IPK+ L + +PV+++ +E L D + V
Sbjct: 3 AIILAAGSGSRM---GADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVV 50
>gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 34.1 bits (78), Expect = 0.042
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKG 65
AV AG R PK + + +P+++ E AL AGL + VTG
Sbjct: 8 AVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVA 58
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase
catalyzes the production of CDP-D-Glucose.
Alpha-D-Glucose-1-phosphate Cytidylyltransferase
catalyzes the production of CDP-D-Glucose from
alpha-D-Glucose-1-phosphate and MgCTP as substrate.
CDP-D-Glucose is the precursor for synthesizing four
of the five naturally occurring 3,6-dideoxy
sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose
(3,6-dideoxy-L-arabino-hexose), paratose
(3,6-dideoxy-D-ribohexose), and tyvelose
(3,6-dideoxy-D-arabino-hexose. Deoxysugars are
ubiquitous in nature where they function in a variety
of biological processes, including cell adhesion,
immune response, determination of ABO blood groups,
fertilization, antibiotic function, and microbial
pathogenicity.
Length = 253
Score = 34.1 bits (79), Expect = 0.044
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 16 GLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYF 71
GLG R +++ PK M+ I RP++ ++++ G DF+ G +IK+YF
Sbjct: 7 GLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYF 62
>gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities:
1) 3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalysing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43,, catalysing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized
describing kinetics and regulation by substrate charge,
energetic charge and amino-sugar demand.
Length = 197
Score = 33.4 bits (77), Expect = 0.080
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 SKVIP-KEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
SK +P K +L + +P+I VIE AL++ L D V V
Sbjct: 10 SKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVA 46
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 32.1 bits (74), Expect = 0.20
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG 61
AG R K +L + +P++++ ++ AL AGL+ + V G
Sbjct: 8 AGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLG 49
>gnl|CDD|40024 KOG4827, KOG4827, KOG4827, Uncharacterized conserved protein
[Function unknown].
Length = 279
Score = 31.8 bits (71), Expect = 0.21
Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 109 YERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMI--------------KL 154
E K H GD+ + L + + P E +A++ +
Sbjct: 113 AEEKDAFHNFL-----KGDDFEKIQLHSLTIFPPGREFVIASVAARCDPEDGKYHDEAFI 167
Query: 155 YEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHI--SDMIEKPDSSTFI 205
EGANILA S+ P+ +C+Y A H PD++ F
Sbjct: 168 CHDEGANILASSQGSPKGACQYPRQLKLPAKWSFNSHTIGESSEPAPDTAAFT 220
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 31.7 bits (73), Expect = 0.23
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 SKVIP-KEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
SK IP K + + +P+I + IE ALE+ L D V V+
Sbjct: 12 SKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVS 48
>gnl|CDD|36674 KOG1461, KOG1461, KOG1461, Translation initiation factor 2B,
epsilon subunit (eIF-2Bepsilon/GCD6) [Translation,
ribosomal structure and biogenesis].
Length = 673
Score = 31.8 bits (72), Expect = 0.23
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 20 RFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDY 70
RF P++ P+ +L + + P+I Y +E AG+ + I +Y
Sbjct: 37 RFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEY 87
>gnl|CDD|31178 COG0836, {ManC}, Mannose-1-phosphate guanylyltransferase [Cell
envelope biogenesis, outer membrane].
Length = 333
Score = 31.7 bits (72), Expect = 0.25
Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 38/217 (17%)
Query: 16 GLGMRFFPIS-KVIPKEMLAIV-DRPVIQYVIEEALE-AGLTDFVFVTGRGKGLIKDYFD 72
G G R +P+S K PK+ L + D ++Q ++ + + + VT + Y
Sbjct: 10 GSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTN------EKYRF 63
Query: 73 IQFELEQSLRKRNKKAELTLLAE-----SIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
I E L + + + ++ E + P+I A A+ G
Sbjct: 64 IVKE---QLPEIDIENAAGIILEPEGRNTAPAIALA-------------ALSATAE--GG 105
Query: 128 NPFALLLPD--MIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVG-KA 184
+ L+LP +I N + K E+ G + P YG ++ G
Sbjct: 106 DALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRP--ETGYGYIETGESI 163
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIF 221
++ V+ + +EKPD T + +G Y+ + +F
Sbjct: 164 AENGVYKVDRFVEKPDLETAKK-YVESGEYLWNSGMF 199
>gnl|CDD|31404 COG1211, IspD, 4-diphosphocytidyl-2-methyl-D-erithritol synthase
[Lipid metabolism].
Length = 230
Score = 29.8 bits (67), Expect = 0.81
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV 59
AV AG G R +PK+ L + RP++++ +E LE+ D + V
Sbjct: 7 AVILAAGFGSRM---GNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVV 53
>gnl|CDD|133003 cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase
catalyzes the formation of GDP-Mannose.
GDP-mannose-1-phosphate guanylyltransferase, also called
GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the
formation of GDP-Mannose from mannose-1-phosphate and
GTP. Mannose is a key monosaccharide for glycosylation
of proteins and lipids. GDP-Mannose is the activated
donor for mannosylation of various biomolecules. This
enzyme is known to be bifunctional, as both
mannose-6-phosphate isomerase and mannose-1-phosphate
guanylyltransferase. This CD covers the N-terminal
GDP-mannose-1-phosphate guanylyltransferase domain,
whereas the isomerase function is located at the
C-terminal half. GDP-MP is a member of the
nucleotidyltransferase family of enzymes.
Length = 274
Score = 29.5 bits (67), Expect = 1.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 176 YGMVQVGKAIDHQVFHISDMIEKPDSST---FIS--NFFIN-GRYILHPDIF 221
YG ++ G+ + V+ + +EKPD T ++ N+ N G ++ F
Sbjct: 151 YGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTF 202
>gnl|CDD|36468 KOG1254, KOG1254, KOG1254, ATP-citrate lyase [Energy production and
conversion].
Length = 600
Score = 28.8 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 45 IEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSL 81
+E + G + +FV GR G I Y D Q L+Q L
Sbjct: 553 ADEYINIGALNGLFVLGRSIGFIGHYLD-QKRLKQGL 588
>gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 25 SKVIP-KEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
SK I K + +P+I Y IE AL + L D V ++ + ++++
Sbjct: 14 SKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEE 59
>gnl|CDD|145819 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 28.3 bits (64), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 217 HPDIFSILNDWKENEGKGEIQLTD 240
HPDI L D K+N G E++ +
Sbjct: 89 HPDIEEFL-DLKKNNGDEEVRARN 111
>gnl|CDD|35434 KOG0213, KOG0213, KOG0213, Splicing factor 3b, subunit 1 [RNA
processing and modification].
Length = 1172
Score = 28.1 bits (62), Expect = 2.7
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 1 MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
+GS+ KA+ + G+ PI ++P+ + +R E ++ D V
Sbjct: 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-------HEKVQENCIDLVGTI 910
Query: 61 G-RGKGLI--KDYFDIQFELEQSLRKRNK 86
RG + +++ I FEL + L+ K
Sbjct: 911 ADRGPEYVSAREWMRICFELLELLKAHKK 939
>gnl|CDD|48466 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a
ribosomal S5 domain 2-like fold, conserved in the
C-terminal domain of DNA mismatch repair
(MutL/MLH1/PMS2) family. This transducer domain is
homologous to the second domain of the DNA gyrase B
subunit, which is known to be important in nucleotide
hydrolysis and the transduction of structural signals
from ATP-binding site to the DNA breakage/reunion
regions of the enzymes. Included in this group are
proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and
E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1
and MLH3. These three complexes have distinct functions
in meiosis. hMLH1-hPMS2 also participates in the repair
of all DNA mismatch repair (MMR) substrates. Roles for
hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been
established. Cells lacking either hMLH1 or hPMS2 have a
strong mutator phenotype and display microsatellite
instability (MSI). Mutation in hMLH1 causes
predisposition to HNPCC, Muir-Torre syndrome and Turcot
syndrome (HNPCC variant). Mutation in hPMS2 causes
predisposition to HPNCC and Turcot syndrome. Mutation in
hMLH1 accounts for a large fraction of HNPCC families.
There is no convincing evidence to support hPMS1 having
a role in HNPCC predisposition. It has been suggested
that hMLH3 may be a low risk gene for colorectal cancer;
however there is little evidence to support it having a
role in classical HNPCC. It has been suggested that
during initiation of DNA mismatch repair in E. coli, the
mismatch recognition protein MutS recruits MutL in the
presence of ATP. The MutS(ATP)-MutL ternary complex
formed, then recruits the latent endonuclease MutH..
Length = 122
Score = 28.3 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 190 FHISDMIEKPDSSTFISN---FFINGRYILHPDIFSILND 226
F IS I KPD + F+NGR + + +N+
Sbjct: 27 FRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINE 66
>gnl|CDD|112090 pfam03260, Lipoprotein_11, Lepidopteran low molecular weight (30
kD) lipoprotein.
Length = 253
Score = 28.2 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 60 TGRGKGLIKDYFDIQFEL---EQSLRKRNKKAELTL 92
G GK ++K YF IQF L E +++ NK+ L L
Sbjct: 80 VGEGKDIVKKYFPIQFRLIFAENTVKLINKRDNLAL 115
>gnl|CDD|36671 KOG1458, KOG1458, KOG1458, Fructose-1,6-bisphosphatase
[Carbohydrate transport and metabolism].
Length = 343
Score = 27.2 bits (60), Expect = 5.5
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 22/106 (20%)
Query: 73 IQFELEQSLRKRNKKAELTLL----AESIPSIGNAVFTWQYERKGLGH--AVWCARNIIG 126
+F LE+ + +N ELT L + +I +AV + GL + + N G
Sbjct: 24 TRFVLEEQRKGKNATGELTQLLNSLQTACKAIASAV-----RKAGLAKLYGLAGSVNSTG 78
Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQL 172
D L D++ + L N ++ G + VSE + +L
Sbjct: 79 DEQKKL---DVLSNDL-----FINALR---SSGRTKVLVSEENEEL 113
>gnl|CDD|88581 cd05395, RasGAP_RASA4, Ras GTPase activating-like 4 protein
(RASAL4), also known as Ca2+ -promoted Ras inactivator
(CAPRI), is a member of the GAP1 family. Members of the
GAP1 family are characterized by a conserved domain
structure comprising N-terminal tandem C2 domains, a
highly conserved central RasGAP domain, and a
C-terminal pleckstrin-homology domain that is
associated with a Bruton's tyrosine kinase motif.
RASAL4, like RASAL, is a cytosolic protein that
undergoes a rapid translocation to the plasma membrane
in response to a receptor-mediated elevation in the
concentration of intracellular free Ca2+ ([Ca2+]i).
However, unlike RASAL, RASAL4 does not sense
oscillations in [Ca2+]i..
Length = 337
Score = 27.0 bits (59), Expect = 6.4
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 63 GKGLIKDYFDIQFELE 78
G+GL+K++ D+ F+LE
Sbjct: 50 GQGLVKEFLDLLFKLE 65
>gnl|CDD|146987 pfam04609, MCR_C, Methyl-coenzyme M reductase operon protein C.
Methyl coenzyme M reductase (MCR) catalyses the final
step in methanogenesis. MCR is composed of three
subunits, alpha (pfam02249), beta (pfam02241) and gamma
(pfam02240). Genes encoding the beta (mcrB) and gamma
(mcrG) subunits are separated by two open reading frames
coding for two proteins C and D. The function of
proteins C and D (this family) is unknown. This family
nowalso includes family MtrC_related,.
Length = 268
Score = 26.7 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 232 GKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKK 267
G+ QLT ++L HD +H G+ DC K
Sbjct: 113 GRRIAQLTPEEKELINEHDLAVFHL-GNFKDCIVYK 147
>gnl|CDD|144638 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal
domain. This family represents the C-terminal domain of
the mutL/hexB/PMS1 family. This domain has a ribosomal
S5 domain 2-like fold.
Length = 118
Score = 26.7 bits (60), Expect = 7.8
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 176 YGMVQVGKAID----HQVFHISDMIEKPDSSTFISN-----FFINGRYILHPDI 220
YG + + +S I KP+ S SN F+NGR + +
Sbjct: 5 YGREFAENLLPIDAEDEGLRLSGFISKPELSR--SNRDYQYLFVNGRPVRDKLL 56
>gnl|CDD|38277 KOG3067, KOG3067, KOG3067, Translin family protein [General
function prediction only].
Length = 226
Score = 26.5 bits (58), Expect = 8.8
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 200 DSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSERHDFLAYHFKGH 259
+ S N G Y + + +ND R L+ ++D L F G
Sbjct: 149 ELSRQSVNSVTAGDYHRPLHVSNFINDLHSG-----------FRLLNLKNDSLRKRFDGL 197
Query: 260 TYD 262
YD
Sbjct: 198 KYD 200
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.139 0.414
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,678,339
Number of extensions: 199814
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 66
Length of query: 299
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,254,100
Effective search space: 876344600
Effective search space used: 876344600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)