RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate
uridylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(299 letters)
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 188 bits (479), Expect = 1e-48
Identities = 109/274 (39%), Positives = 163/274 (59%), Gaps = 3/274 (1%)
Query: 7 VRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGL 66
++K +FP AG G RF PI+K IPKEML IVD+P+IQY +EEA+EAG VTGR K
Sbjct: 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRS 61
Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126
++DYFD +E+E ++ NK+ +I + Q + KGLGHA+ +IG
Sbjct: 62 LEDYFDTSYEIEHQIQGTNKE-NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG 120
Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186
+ PFA++L D + + + + M LY+K +I+A+ E + KYG+++ +
Sbjct: 121 NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEE 180
Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246
+ I DM+EKP+ SN + GRYIL PDIF IL++ K + EIQ+TD++R +
Sbjct: 181 GV-YEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKN-NEIQITDALRTQA 238
Query: 247 ERHDFLAYHFKGHTYDCGSKKGFVLANIAFALAR 280
+R +AY FKG YDCGS +G++ A+ A+ R
Sbjct: 239 KRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 168 bits (426), Expect = 1e-42
Identities = 116/293 (39%), Positives = 164/293 (55%), Gaps = 6/293 (2%)
Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62
++K +RKAVFP+AGLG RF P +K +PKEML +VDRP+IQY ++EA+EAG+ +FVTGR
Sbjct: 10 TIKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGR 69
Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122
GK ++D+FDI +ELE ++ R K + +L + GN + Q E GLGHAVWCAR
Sbjct: 70 GKSALEDHFDIAYELEATMAARGKSLD--VLDGTRLKPGNIAYVRQQEPMGLGHAVWCAR 127
Query: 123 NIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVG 182
+I+GD PFA+LLPD M G +E P +
Sbjct: 128 DIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLIC---AEEVPDDQTHRYGIITP 184
Query: 183 KAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSM 242
D + + ++EKP T SN + GRYIL P++ I + + GEIQLTD+M
Sbjct: 185 GTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRI-LENQGKGAGGEIQLTDAM 243
Query: 243 RKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLV 295
+++ F F+G YDCG K GF+ AN+A AL+R D+ + +
Sbjct: 244 QRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPDLEPAVRAFAVKAL 296
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 153 bits (386), Expect = 5e-38
Identities = 105/291 (36%), Positives = 161/291 (55%), Gaps = 4/291 (1%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
KV+KAV P+AGLG R P +K IPKEML +VD+P+IQYV+ E + AG+T+ V VT K
Sbjct: 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK 65
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
I+++FD FELE L KR K+ L + P + Q KGLGHAV CA +
Sbjct: 66 NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPV 125
Query: 125 IGDNPFALLLPDMIMSPLEGENCMAN---MIKLYEKEGANILAVSECDPQLSCKYGMVQV 181
+GD P A++LPD+I+ E + N MI+ +++ G + + V + +
Sbjct: 126 VGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKG 185
Query: 182 GKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDS 241
+ + + ++EKP + SN I GRY+L DI+ +L G EIQLTD+
Sbjct: 186 VELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGD-EIQLTDA 244
Query: 242 MRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLK 292
+ L E+ AYH KG ++DCG+K G++ A + + + + ++ + L+
Sbjct: 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLE 295
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 140 bits (353), Expect = 3e-34
Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 3/296 (1%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
V+ V P AGLG RF P +K +PKE+L +VD P I+ + EA E G T +T K
Sbjct: 10 NAVKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNK 69
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
+ +F+ ELE++L +R K + + + AV Q + GLGHAV A ++
Sbjct: 70 AGVLAHFERSSELEETLMERGKTDQ-VEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESV 128
Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184
+ D+ + + L E G+ + AV + +S
Sbjct: 129 LDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADT 188
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
D V + M+EKP S GRY+L IF L G E+QLTD++
Sbjct: 189 KDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGG-ELQLTDAIDL 247
Query: 245 L-SERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSALK 299
L E H +G +D G+ G++ A + F L+ + ++ +K +++ +
Sbjct: 248 LIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQILAEHE 303
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate
thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia
coli} SCOP: c.68.1.6
Length = 296
Score = 128 bits (323), Expect = 2e-30
Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 40/269 (14%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG-RGKGLI 67
K + G G R PI++ + K++L I D+P+I Y + + AG+ + + +T KG
Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYF 64
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
+ E L + Q GL A +
Sbjct: 65 QRLLGDGSEFGIQLE----------------------YAEQPSPDGLAQAFIIGETFLNG 102
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEK-EGANILAVSECDPQLSCKYGMVQVGKAID 186
P L+L D I G+ + + + EGA + DP+ ++G+V+
Sbjct: 103 EPSCLVLGDNI---FFGQGFSPKLRHVAARTEGATVFGYQVMDPE---RFGVVEFDDN-- 154
Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246
F + EKP SN+ + G Y + K +E +GE+++T +
Sbjct: 155 ---FRAISLEEKPKQ--PKSNWAVTGLYFYDSKVVEYAKQVKPSE-RGELEITSINQMYL 208
Query: 247 ERHDFLAYHFKGHTY--DCGSKKGFVLAN 273
E + D G+ + A+
Sbjct: 209 EAGNLTVELLGRGFAWLDTGTHDSLIEAS 237
>3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose,
structural genomics, center for structural genomics of
infectious diseases; HET: SUC; 2.76A {Bacillus
anthracis}
Length = 269
Score = 121 bits (303), Expect = 2e-28
Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 36/269 (13%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
K + G G R +PI+KV K +L + P+I + + + + +TD + +TG+
Sbjct: 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEH 81
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
F + + Q + G+ A+ +
Sbjct: 82 MGDVVSFLGSG---------------------QEFGVSFTYRVQDKAGGIAQALGLCEDF 120
Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184
+G++ ++L D I S + + + ++ + + D +Q K
Sbjct: 121 VGNDRMVVILGDNIFSD----DIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQNRK- 175
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
I ++ EKP S++ + G Y+ +FS + + K + GE+++TD
Sbjct: 176 -------IIEIEEKPK--EPKSSYAVTGIYLYDSKVFSYIKELKPSAR-GELEITDINNW 225
Query: 245 LSERHDFLAYHFKGHTYDCGSKKGFVLAN 273
+R G D G+ AN
Sbjct: 226 YLKRGVLTYNEMSGWWTDAGTHVSLQRAN 254
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold, structural genomics,
PSI; HET: TYD; 1.70A
{Methanothermobacterthermautotrophicus} SCOP: c.68.1.6
Length = 295
Score = 108 bits (271), Expect = 2e-24
Identities = 53/269 (19%), Positives = 103/269 (38%), Gaps = 38/269 (14%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG-RGKGLI 67
K + G G R +PI++ + K++L I D+P+I Y + + AG+ D + ++ R L
Sbjct: 5 KGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
+D + + Q E +G+ A ++ IGD
Sbjct: 65 RDLLGDGSQFGVRFS----------------------YRVQEEPRGIADAFIVGKDFIGD 102
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187
+ AL+L D + + L ++GA I DP+ +G+V+ +
Sbjct: 103 SKVALVLGDNVFYGHRFSEILRRAASL--EDGAVIFGYYVRDPR---PFGVVEFDS--EG 155
Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247
+V I + +P SN+ + G Y + I + ++ +GE+++T +
Sbjct: 156 RVISIEEKPSRP-----KSNYVVPGLYFYDNQVVEIARRIEPSD-RGELEITSVNEEYLR 209
Query: 248 RHDFLAYHFK--GHTYDCGSKKGFVLANI 274
D G+ G + A+
Sbjct: 210 MGKLRVELMGRGMAWLDTGTHDGLLEASS 238
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A*
Length = 293
Score = 106 bits (265), Expect = 6e-24
Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 38/270 (14%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKG-L 66
RK + G G R P + I K++L + D+P+I Y + + AG+ + + ++
Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 62
Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126
+ L+ + Q GL A + IG
Sbjct: 63 FQQLLGDGSNWGLDLQ----------------------YAVQPSPDGLAQAFLIGESFIG 100
Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186
++ AL+L D + + + + + + GA++ A DP+ +YG+V+
Sbjct: 101 NDLSALVLGDNLYYGHDFHELLGSASQR--QTGASVFAYHVLDPE---RYGVVEFD--QG 153
Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246
+ + + +P SN+ + G Y + I D K + +GE+++TD R
Sbjct: 154 GKAISLEEKPLEP-----KSNYAVTGLYFYDQQVVDIARDLKPSP-RGELEITDVNRAYL 207
Query: 247 ERHDFLAYHFK--GHTYDCGSKKGFVLANI 274
ER D G+ + A
Sbjct: 208 ERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 237
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 89.0 bits (219), Expect = 1e-18
Identities = 36/288 (12%), Positives = 83/288 (28%), Gaps = 23/288 (7%)
Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIV-DRPVIQYVIEEALEAGLTDFVFVTG 61
+ + G G R +P++K K + + + +I + L + ++ +T
Sbjct: 16 DASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 75
Query: 62 RGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCA 121
+ + + K E+ +S +G AV
Sbjct: 76 FNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--------ENPDWFQGTADAVRQY 127
Query: 122 RNIIGDNPFA--LLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMV 179
+ ++ L+L + ++ E + + L + E +
Sbjct: 128 LWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187
Query: 180 QVGKAIDHQ-----------VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWK 228
+ G+ I+ + + + + G Y++ D+ L K
Sbjct: 188 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 247
Query: 229 ENEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAF 276
+ S AY + G+ D G+ + F AN+
Sbjct: 248 FPGAN-DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGI 294
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase,
mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella
enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Length = 259
Score = 88.2 bits (217), Expect = 2e-18
Identities = 41/266 (15%), Positives = 86/266 (32%), Gaps = 23/266 (8%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
KAV GLG R + V PK M+ I +P++ ++++ G+ DF+ G +I
Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
K+YF F S + + N + G + + D
Sbjct: 63 KEYFANYFL-HMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD 121
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187
+ L ++ L+ + + A+D
Sbjct: 122 DEAFLFTYGDGVADLDIKATIDFHKA-------------HGKKATLTATFPPGRFGALDI 168
Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247
Q + EKP G ++L+P + ++++ + + + L++
Sbjct: 169 QAGQVRSFQEKPKGDGA---MINGGFFVLNPSVIDLIDNDATTWEQ------EPLMTLAQ 219
Query: 248 RHDFLAYHFKGHTYDCGSKKGFVLAN 273
+ + +A+ G + + V
Sbjct: 220 QGELMAFEHPGFWQPMDTLRDKVYLE 245
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 87.7 bits (216), Expect = 3e-18
Identities = 35/285 (12%), Positives = 82/285 (28%), Gaps = 28/285 (9%)
Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRP-VIQYVIEEALEAGLTDFVFVTGR 62
L + A G G R ++ K + + +I + + AL +G+ T
Sbjct: 9 LARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQY 68
Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122
+ + ++ + R + + + +G AV+
Sbjct: 69 KAHSLIRHLQRGWDFFRPERNESFD----------ILPASQRVSETQWYEGTADAVYQNI 118
Query: 123 NII--GDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
+II + ++L + ++ E + + L V + +G++
Sbjct: 119 DIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEA---TGFGVMH 175
Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD-IFSILNDWKENEGKGEIQLT 239
V + + F G Y+ H + + +
Sbjct: 176 VNEKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGK 235
Query: 240 DSMRKLSERHDFLAYHF-----------KGHTYDCGSKKGFVLAN 273
D + + E +A+ F + + D G+ + AN
Sbjct: 236 DIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQAN 280
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 85.0 bits (209), Expect = 2e-17
Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 47/258 (18%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KA AG G R PI+ PK + I+ +P+I+Y IE + G+ D + K
Sbjct: 2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKN---K 58
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
+YF E+ L++ + ++ + + ++
Sbjct: 59 EYF------EKKLKE---------------------ISIVTQKDDIKGTGAAILSAKFND 91
Query: 129 PFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQ 188
++ D+ S + + + I+ V +P+ +
Sbjct: 92 EALIIYGDLFFS------NEKEICNIITLKENAIIGVKVSNPKDYG--------VLVLDN 137
Query: 189 VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSER 248
++S +IEKP+ SN G Y L+ DIF+ L+ +E GE++LTD++ +++
Sbjct: 138 QNNLSKIIEKPEIP--PSNLINAGIYKLNSDIFTYLDKISISER-GELELTDAINLMAKD 194
Query: 249 HDFLAYHFKGHTYDCGSK 266
H ++G+ D G
Sbjct: 195 HRVKVIEYEGYWMDIGKP 212
>2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis,
nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga
maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Length = 336
Score = 82.9 bits (204), Expect = 7e-17
Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 33/258 (12%)
Query: 9 KAVFPIAGLGMRFFPIS-KVIPKEMLAIV-DRPVIQYVIEEALE-AGLTDFVFVTGRGKG 65
KA+ G G RF+P+S PK+ L + ++ ++++ E LE D + VT
Sbjct: 3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTH---- 58
Query: 66 LIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII 125
KDY + + +P + + + +K A + +
Sbjct: 59 --KDYVERT-------------------KKELPELPDENIIAEPMKKNTAPACFIGTKLA 97
Query: 126 GDNPFALLLP-DMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184
D+ L+LP D + + ++ + + YG +++G+
Sbjct: 98 DDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEE 157
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
++ V ++ EKPD T F +GR++ + +F E K S+ +
Sbjct: 158 LEEGVHKVAQFREKPDLET-AKKFVESGRFLWNSGMFLWKAREFIEEVK---VCEPSIYE 213
Query: 245 LSERHDFLAYHFKGHTYD 262
+ D + Y+
Sbjct: 214 NLKDVDPRNFEELKKAYE 231
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
Length = 456
Score = 82.7 bits (203), Expect = 8e-17
Identities = 49/261 (18%), Positives = 86/261 (32%), Gaps = 39/261 (14%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
KK AV AG G R + +PK + I +P++++VI+ A + G + + G G
Sbjct: 3 KKALSAVILAAGKGTRMYSD---LPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGG 59
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124
L++ + + + Q E+ G HAV A
Sbjct: 60 DLMRTHL---------------------------ANEQVNWVLQTEQLGTAHAVQQAAPF 92
Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184
DN ++L L + + +I+ + G +L V+ +P YG +
Sbjct: 93 FKDNENIVVLYGDAP--LITKETLEKLIEAKPENGIALLTVNLDNPT---GYGRIIRE-- 145
Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244
+ V I + + I L N +GE LTD +
Sbjct: 146 -NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIAL 204
Query: 245 LSER-HDFLAYHFKGHTYDCG 264
++ +A G
Sbjct: 205 ANQDNCQVVAVQATDVMEVEG 225
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
1g95_A*
Length = 468
Score = 77.4 bits (189), Expect = 4e-15
Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
A+ AG G R +PK + + ++++V V V G L+++
Sbjct: 14 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 70
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129
G F Q E+ G GHAV I+
Sbjct: 71 VLA----------------------------GQTEFVTQSEQLGTGHAVMMTEPILEGLS 102
Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQV 189
L+ + GE+ + + + +E D + + V
Sbjct: 103 GHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIV 162
Query: 190 FHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231
+ + ++ L + +I + + E
Sbjct: 163 EQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGE 204
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 72.8 bits (177), Expect = 8e-14
Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 38/256 (14%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
V AG G R + +PK + + + ++Q+VI+ A E G V G G L+K
Sbjct: 7 SVVILAAGKGTRMYSD---LPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLK 63
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
N + Q E+ G GHA+ A D+
Sbjct: 64 QAL---------------------------KDDNLNWVLQAEQLGTGHAMQQAAPFFADD 96
Query: 129 PFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQ 188
L+L + + + + G +L V DP + +
Sbjct: 97 EDILMLYGDVPL--ISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGK--VTGI 152
Query: 189 VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSER 248
V H E+ + I + + + N N +GE +TD + +
Sbjct: 153 VEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTN----NNAQGEYYITDIIALAYQE 208
Query: 249 HDFLAYHFKGHTYDCG 264
+ +
Sbjct: 209 GREIVAVHPQRLSEVE 224
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann-like fold, LEFT-handed-beta-helix, trimer, cell
shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A
3d98_A* 3dj4_A 3foq_A 2qkx_A*
Length = 495
Score = 68.6 bits (166), Expect = 2e-12
Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 27/250 (10%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74
AG G R PK + + R ++ +V+ + + V G I
Sbjct: 14 AGPGTRMRSD---TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVG-- 68
Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLL 134
EL +L + Q G GHAV C + + D+ ++
Sbjct: 69 -ELADTLGR------------------TIDVALQDRPLGTGHAVLCGLSALPDDYAGNVV 109
Query: 135 PDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHISD 194
+PL + +A++I + A + + L +G ++ + DH+V I +
Sbjct: 110 VTSGDTPLLDADTLADLIATHRAVSAAV---TVLTTTLDDPFGYGRILRTQDHEVMAIVE 166
Query: 195 MIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSERHDFLAY 254
+ S I + S L+ N + E+ LTD + L +
Sbjct: 167 QTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHA 226
Query: 255 HFKGHTYDCG 264
+
Sbjct: 227 SHVDDSALVA 236
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 65.3 bits (158), Expect = 2e-11
Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 55/276 (19%)
Query: 4 LKKVR-KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62
+K++R KA+ AGLG R P+++ PK ++ + +P+I+Y IE E G+ D + + G
Sbjct: 21 MKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGY 80
Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122
K + + +
Sbjct: 81 LKEQFDYLKEKY------------------------GVRLVFNDKYADYNNFYSLYLVKE 116
Query: 123 NIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVG 182
+ ++ +N + + + + +V D + G
Sbjct: 117 EL------------ANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---NEWFLVYG 161
Query: 183 KAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD----IFSILNDWKENEGKGEIQL 238
+ + D+I + ++G I S ++ + ++
Sbjct: 162 DD-----YKVQDIIVDSK-----AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYW 211
Query: 239 TDSMRKLSERHDFLAYHFKGHT-YDCGSKKGFVLAN 273
+ ++ + D +G++ Y+ S + +
Sbjct: 212 DNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.0 bits (101), Expect = 8e-05
Identities = 70/336 (20%), Positives = 107/336 (31%), Gaps = 142/336 (42%)
Query: 29 PKEMLAIVDRPV---------IQYVIEEA-----------LEAGLTDFV--FVTGRG--- 63
P E A D P + YV L LT+F ++ G
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 64 ----------------KGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGN----A 103
K LIK+Y + ++ K++ A L ++ GN A
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGE-GNAQLVA 158
Query: 104 VFTWQ-----Y--ERKGLGHAVWCARNIIGD--NPFALLLPDMIMSPLEGENCMANMIKL 154
+F Q Y E + L + + ++GD A L ++I + L+ E K+
Sbjct: 159 IFGGQGNTDDYFEELRDL-YQTY--HVLVGDLIKFSAETLSELIRTTLDAE-------KV 208
Query: 155 YEKEGANILA------------------VSECDP-----QL-----SCKY-GMVQVGKAI 185
+ + G NIL +S C P QL + K G G+
Sbjct: 209 FTQ-GLNILEWLENPSNTPDKDYLLSIPIS-C-PLIGVIQLAHYVVTAKLLGF-TPGELR 264
Query: 186 DHQVF-----H-----ISDMIEKPDS-STFISN--------FFING--------RYILHP 218
+ H + I + DS +F + FFI G L P
Sbjct: 265 SY--LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPP 321
Query: 219 DIFSILNDWKEN-EGKGEIQLTDSMRKLS----ERH 249
SIL D EN EG L S+ L+ + +
Sbjct: 322 ---SILEDSLENNEGVPSPML--SISNLTQEQVQDY 352
Score = 42.2 bits (99), Expect = 1e-04
Identities = 57/328 (17%), Positives = 98/328 (29%), Gaps = 150/328 (45%)
Query: 12 FPIAGLG--MRFFPISKVI---PKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGL 66
P+ G+ + +K++ P E+ L+ TG +GL
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELR-------------SYLKG-------ATGHSQGL 277
Query: 67 I-------KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVW 119
+ D ++ F +KA +T+L F +
Sbjct: 278 VTAVAIAETDSWE-SFF-VSV-----RKA-ITVL-----------F-------------F 305
Query: 120 CARNIIG-----DNPFALLLPDMIMSPLE-GE---NCMANMIKLYEKEGANILAVSECDP 170
IG P L P ++ LE E + M L++S
Sbjct: 306 -----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--------------LSISNL-T 345
Query: 171 QLSCKYGMVQVGKAIDH---------QVFHISDMIEKPDSSTFISNFFINGRYILHPDIF 221
Q QV ++ QV IS ++ N ++G P
Sbjct: 346 Q-------EQVQDYVNKTNSHLPAGKQV-EIS-LVNGAK------NLVVSG----PPQ-- 384
Query: 222 SI--LNDW----KENEGKGEIQLTDSMRKLSERHDFL----AYHFKGHTYDCGSKKGFVL 271
S+ LN K G + ++ S RKL + FL +H H L
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--SH-L---------L 432
Query: 272 ANIAFALARQDI-RSDIE---TDLKTLV 295
A L +D+ ++++ D++ V
Sbjct: 433 VP-ASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 34.1 bits (78), Expect = 0.039
Identities = 22/133 (16%), Positives = 30/133 (22%), Gaps = 78/133 (58%)
Query: 8 RKAVFPIAGLGMRFFPIS-------------KV----------IPKEMLAIVDRPV---- 40
RK F RF P++ + + + I PV
Sbjct: 412 RKLKF-----SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PVYDTF 463
Query: 41 ----------------IQYVI------EEALEAGLT---DFVFVTGRG--KGLIKDYFDI 73
+ +I E + T DF G G GL
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF----GPGGASGL------- 512
Query: 74 QFELEQSLRKRNK 86
L RNK
Sbjct: 513 -----GVLTHRNK 520
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 41.1 bits (95), Expect = 3e-04
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 21/156 (13%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
A G G R + +PK+ L + +P+I + +E+ + D + ++ K+
Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP-----KE 58
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129
+ + + + ++ + + +I N + V + D+
Sbjct: 59 WMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGI-----------RFVEKTYGLTDDDI 107
Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAV 165
P + I + GA +
Sbjct: 108 IVTHDAVR---PFLTHRIIEENIDAALETGAVDTVI 140
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 37.0 bits (84), Expect = 0.005
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFV 57
A G G R +PK+ L + DRP++ + IE+ + + +
Sbjct: 5 AGILAGGTGTRMG--ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKI 50
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.009
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 78 EQSLRKRNKKAELTLLA-ESIPSIGNAV 104
+Q+L+K +A L L A +S P++ A+
Sbjct: 19 KQALKKL--QASLKLYADDSAPAL--AI 42
Score = 30.4 bits (67), Expect = 0.54
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 9/27 (33%)
Query: 152 IKLYEKEGANILAVSECDPQLSCKYGM 178
+KLY + A P L+ K M
Sbjct: 29 LKLYADDSA---------PALAIKATM 46
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.90A {Thermus thermophilus HB8}
SCOP: c.68.1.19
Length = 232
Score = 36.0 bits (82), Expect = 0.011
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG 61
A+ G V K ++ RP++++V+E AGL+
Sbjct: 3 PSAIVLAGGKEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGEN 55
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393,
structural genomics, JCSG, joint center for structural
genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima}
SCOP: c.68.1.13
Length = 234
Score = 35.8 bits (81), Expect = 0.011
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 1 MGSLKKVRK------AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLT 54
MGS K A+ AG G R S+ +PK+ L I R + +Y + L++
Sbjct: 1 MGSDKIXXXXXXMNVAILLAAGKGERM---SENVPKQFLEIEGRMLFEYPLSTFLKSEAI 57
Query: 55 D 55
D
Sbjct: 58 D 58
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI,
protein structure initiative, nysgrc; 2.30A
{Helicobacter pylori 26695}
Length = 308
Score = 35.3 bits (80), Expect = 0.018
Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 31/225 (13%)
Query: 9 KAVFPIAGLGMRFFPIS-KVIPKEMLAIVD-RPVIQYVIEEALEAGLTDFVFVTGRGKGL 66
K + G G R +P+S + PK+ L + D + + + + R L
Sbjct: 6 KNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFK---------------RNASL 50
Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126
+ + + N+K L E I N + E A A + +
Sbjct: 51 VDETLIVC----------NEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALM 100
Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186
+ LL+ ++ N IK V+ + G
Sbjct: 101 SDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNT---EFGYIES 157
Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231
+ IEKP I F +G + + +F +E
Sbjct: 158 PNGLDVKRFIEKPSLDKAI-EFQKSGGFYFNSGMFVFQAGVFLDE 201
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer,
alpha-beta-alpha, transferase; 2.00A {Neisseria
meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Length = 228
Score = 35.3 bits (80), Expect = 0.018
Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 29/167 (17%)
Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG 63
++K AV P K + + ++ + I A+ + D + V+
Sbjct: 1 MEKQNIAVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVST-- 52
Query: 64 KGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN 123
D I E + + + + V A
Sbjct: 53 -----DGGLIAEEAKNFGVEVVLR----------------PAELASDTASSISGVIHALE 91
Query: 124 IIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDP 170
IG N + L G + EK ++++ +
Sbjct: 92 TIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 35.0 bits (79), Expect = 0.019
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALE 50
SLK+ A+ P AG+G+RF PK+ + I + V+++V+
Sbjct: 2 SLKRKNIALIPAAGIGVRF---GADKPKQYVEIGSKTVLEHVLGIFER 46
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 34.0 bits (77), Expect = 0.042
Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 38/158 (24%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
+ AG G RF K + I + P+I I L + V ++
Sbjct: 5 VIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIY--GDLEKIIIVGKYVNEMLPL 57
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129
D V + +G+ ++ D
Sbjct: 58 LMDQI-----------------------------VIYNPFWNEGISTSLKLGLRFFKDYD 88
Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSE 167
L+ + P + + +I ++ ++ +
Sbjct: 89 AVLVALGDM--PFVTKEDVNKIINTFKPNCKAVIPTHK 124
>1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
plantherbicide, non-mevalonate pathway, isoprenoid;
HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13
Length = 228
Score = 33.9 bits (76), Expect = 0.042
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALE 50
++K + G G R +PK+ + ++ +P+ Y
Sbjct: 1 MEKSVSVILLAGGQGKRM---KMSMPKQYIPLLGQPIALYSFFTFSR 44
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A
Length = 197
Score = 33.8 bits (77), Expect = 0.051
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
V AG R PK++L D V+ ++ A +AG + G ++
Sbjct: 7 TGVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVR 61
Query: 69 DYF 71
Sbjct: 62 AAM 64
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 33.4 bits (76), Expect = 0.056
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
V AG R PK++L + D ++ + A + G + +
Sbjct: 8 GVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLE 62
Query: 70 YFDIQF 75
++
Sbjct: 63 KVELDG 68
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 32.8 bits (74), Expect = 0.089
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
+ AG RF + + K+ L + + P+ Y + + VT +K
Sbjct: 6 LIMLAAGNSTRF---NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKK 62
Query: 70 Y 70
+
Sbjct: 63 F 63
>3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural
genomics consortium, TBSGC, tryptophan synthes
2-C-methyl-D-erythritol 4-phosphate cytidyltransferase;
2.40A {Mycobacterium tuberculosis}
Length = 231
Score = 32.7 bits (74), Expect = 0.10
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA 51
A+ P AG G R + +PK + + +I+ ++ L++
Sbjct: 10 AIVPAAGSGERL---AVGVPKAFYQLDGQTLIERAVDGLLDS 48
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair,
HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2
PDB: 1h7u_A* 1ea6_A*
Length = 365
Score = 32.4 bits (73), Expect = 0.13
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 138 IMSPLEGENCMANMIKLYEKEGA-NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMI 196
++ + N+ ++ ++ +++ + P S H +F+IS I
Sbjct: 214 VVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFI 273
Query: 197 EKPDSSTFISN-----FFINGRYILHPDIFSILND 226
+ S+ FFIN R + ++N+
Sbjct: 274 SQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNE 308
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP), isoprenoid biosynthesys; HET: CTP; 1.50A
{Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A*
1inj_A 1vgt_A 1vgu_A 1h3m_A
Length = 236
Score = 32.2 bits (72), Expect = 0.13
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV 59
AV P AG G R PK+ L+I ++ ++++ + L V +
Sbjct: 10 AVVPAAGFGRRM---QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVI 56
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP:
c.68.1.13 PDB: 1vh3_A 3duv_A*
Length = 262
Score = 31.9 bits (71), Expect = 0.17
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVT 60
S +P + LA I +P+IQ+V E+AL++G + + T
Sbjct: 13 SSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIAT 49
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A;
molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A
{Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A*
1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Length = 201
Score = 31.8 bits (71), Expect = 0.18
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 1 MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
M + + V G R + K +L + +P+ Q+V +AL L+ V
Sbjct: 1 MNLMTTI-TGVVLAGGKARRM----GGVDKGLLELNGKPLWQHVA-DALMTQLSHVVVNA 54
Query: 61 GRGKGLIKDYFDIQFELEQ 79
R + + + E
Sbjct: 55 NRHQEIYQASGLKVIEDSL 73
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 31.7 bits (71), Expect = 0.20
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
S +P + LA I +P+IQ+V E+A++AG + T +
Sbjct: 13 STRLPGKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDER 53
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 31.4 bits (70), Expect = 0.28
Identities = 26/206 (12%), Positives = 56/206 (27%), Gaps = 28/206 (13%)
Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRK 83
S +P + L IV +P+IQ+V E AL+ V+V + +
Sbjct: 13 SSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQA----------- 61
Query: 84 RNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLE 143
G + + + + + + + + L D M
Sbjct: 62 ----------------FGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPR 105
Query: 144 GENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSST 203
+ ++ L + + + + V ++ I P ++
Sbjct: 106 DVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE 165
Query: 204 FISNFFINGRYILHPDIFSILNDWKE 229
G Y D+ + E
Sbjct: 166 KARYLKHVGIYAYRRDVLQNYSQLPE 191
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
TTHA0171, ISPD_THET8, ISPD, structural genomics PSI;
2.20A {Thermus thermophilus HB8}
Length = 236
Score = 31.1 bits (69), Expect = 0.29
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIE 46
+ P AG G+R PK L + R ++++ +
Sbjct: 28 VLIPAAGNGLRL----GRGPKAFLQVGGRTLLEWTLA 60
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 29.9 bits (66), Expect = 0.79
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFV 59
SK IP + + + P+I +V+ AL+AG+ V+V
Sbjct: 14 SKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWV 49
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 1g6c_A* 1g4e_A* 1g69_A* 1g4s_A*
1g4p_A* 1g67_A*
Length = 227
Score = 29.5 bits (65), Expect = 0.85
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 10/115 (8%)
Query: 18 GMRFFPISKVIPKEML---AIVDRPVIQY----VIEEALEAGLTDFVFVTGRGKGLIKDY 70
G+R IS+ + KE+L I+ + V+++AL+ G T + F R KG
Sbjct: 3 GIRMTRISREMMKELLSVYFIMGSNNTKADPVTVVQKALKGGATLYQF---REKGGDALT 59
Query: 71 FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII 125
+ + + + + ++A + + + + R I
Sbjct: 60 GEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAI 114
>2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein
A; putative protein, molybdenum cofactor, structural
genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5}
Length = 201
Score = 28.7 bits (63), Expect = 1.6
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 2 GSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIE 46
GSL KV G RF K + I + VI+ V E
Sbjct: 9 GSLSKVNTCYVLAGGKSKRF-----GEDKLLYEIKGKKVIERVYE 48
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide
biosynthesis, magnesium; HET: KDO CTP; 1.90A
{Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 27.8 bits (60), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTD 55
S +P + L I +P+I +V+E A E+G
Sbjct: 29 STRLPGKPLVDINGKPMIVHVLERARESGAER 60
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 27.1 bits (59), Expect = 5.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 44 VIEEALEAGLTDFVFVTGRGKGLIKDYFD 72
++ A G+ V TGR ++ Y D
Sbjct: 30 AVQAAKAQGIK-VVLCTGRPLTGVQPYLD 57
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein,
lipid binding, helix swapping, structural genomics,
structural genomics consortium; 2.80A {Homo sapiens}
SCOP: d.129.3.2
Length = 237
Score = 26.9 bits (59), Expect = 5.4
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 193 SDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLT 239
++E D T I + +N F +L WK + KG L
Sbjct: 108 WKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLV 154
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.139 0.414
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,634,697
Number of extensions: 125557
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 66
Length of query: 299
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 207
Effective length of database: 3,462,782
Effective search space: 716795874
Effective search space used: 716795874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)