BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate
uridylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(299 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 299
Score = 619 bits (1597), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT
Sbjct: 1 MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
Query: 61 GRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWC 120
GRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWC
Sbjct: 61 GRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWC 120
Query: 121 ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ
Sbjct: 121 ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD
Sbjct: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
Query: 241 SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSALK 299
SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSALK
Sbjct: 241 SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSALK 299
>gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 292
Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 101/235 (42%), Gaps = 40/235 (17%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-TGRGKGLI 67
K + G G R P++ ++ K+ML I ++P+I Y + ++AG+ + + + T R ++
Sbjct: 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVL 61
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
K++ + + + + +P+ GL + IGD
Sbjct: 62 KEFLG---------SGEKWGVQFSYIEQLVPA-------------GLAQSYILGAEFIGD 99
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGA--NILAVSECDPQLSCKYGMVQVGKAI 185
+ L+L D + +++ ++ K A N V C Q +YG+V+V +
Sbjct: 100 SSSVLILGDNVF-------YGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSS- 151
Query: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
+Q I + P SS F + G Y ++ +I + + + +GE+++TD
Sbjct: 152 -NQAISIEEKPNNPKSS-----FAVTGIYFYDQEVVNIARNIRPS-ARGELEITD 199
>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 442
Score = 30.4 bits (67), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 LKKVRKAVFPIAGLGMRF-FPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62
+K+ R A+ AG G R SKV+ K I +P+I +V+E AG+ + V G
Sbjct: 1 MKRKRLAIVLAAGRGHRMKSSSSKVLQK----IAGKPMISHVMETIAAAGIENVALVLGY 56
Query: 63 G 63
G
Sbjct: 57 G 57
>537021.9.peg.753_1
Length = 1033
Score = 28.5 bits (62), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
R A AG+ + P+S+++P D PV Q+ ++ +AGL F F+ + L+
Sbjct: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLL 93
+ D L +R K +L+L+
Sbjct: 583 QKSLDF-------LAQRGVKVDLSLI 601
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 35/117 (29%)
Query: 112 KGLGHA----VWC-----ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI 162
K LG A V C A + + + PF+LLL D++M ++G I+L +
Sbjct: 20 KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-------IELARR----- 67
Query: 163 LAVSECDPQLSCKY--GMVQVGKAIDHQV----------FHISDMIEKPDSSTFISN 207
+E DP L + G V D FH+ D++ + + I N
Sbjct: 68 --ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 28 IPKEMLAIVDR-PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNK 86
+P+E+ V++ + +E+ L + L+D + R G ++D D + +SLR ++K
Sbjct: 413 LPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSK 472
Query: 87 K 87
+
Sbjct: 473 R 473
>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 161 NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFIN 211
N+L +S ++S Y +VQ GK + H + ++ + S FI F++N
Sbjct: 99 NLLRISGKKHRISSAYVLVQNGKVLRHHI-SVAQLTMYKLSEEFI-KFYLN 147
>gi|254780410|ref|YP_003064823.1| hypothetical protein CLIBASIA_01475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 362
Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 230 NEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIET 289
N G+ ++ ++LS + G T +G + AF+L +Q R DI
Sbjct: 266 NPGQADLSSHVDFQRLSSIAILYKLYINGLTTQGKFLEGLGIWQRAFSLMKQTARKDILL 325
Query: 290 D-LKTLVSA 297
D +K LVS
Sbjct: 326 DSVKRLVST 334
>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 411
Score = 23.1 bits (48), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 221 FSILNDWKENEGKGEIQLTDSMRKLS 246
++L+D KEN G IQ D++ K+S
Sbjct: 324 LAVLSDNKENIGYDVIQHEDNLVKIS 349
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,063
Number of Sequences: 1233
Number of extensions: 7897
Number of successful extensions: 24
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 12
length of query: 299
length of database: 328,796
effective HSP length: 73
effective length of query: 226
effective length of database: 238,787
effective search space: 53965862
effective search space used: 53965862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)