Query gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs 119 out of 2026
Neff 8.7
Searched_HMMs 33803
Date Wed Jun 1 12:31:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780367.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1oed_B Acetylcholine receptor 20.0 46 0.0014 12.6 7.2 85 33-117 3-89 (250)
2 >1oed_A Acetylcholine receptor 16.4 57 0.0017 12.2 8.4 39 33-71 3-42 (227)
3 >1oed_C Acetylcholine receptor 11.2 83 0.0024 11.4 7.8 103 33-135 3-108 (160)
4 >2r6g_G Maltose transport syst 6.4 1.4E+02 0.004 10.4 1.0 37 196-232 77-113 (124)
5 >3eff_K Voltage-gated potassiu 5.4 1.6E+02 0.0047 10.0 3.4 39 238-276 66-104 (111)
6 >2bg9_E Acetylcholine receptor 4.0 2.3E+02 0.0069 9.2 13.4 87 33-119 2-91 (159)
7 >2jaf_A Halorhodopsin, HR; chr 3.3 2.9E+02 0.0086 8.8 4.4 11 41-51 8-18 (80)
8 >1pq1_B BCL2-like protein 11; 2.9 3.4E+02 0.01 8.4 3.6 21 256-276 7-27 (33)
9 >1t1e_A Kumamolisin; proenzyme 2.9 3.4E+02 0.01 8.4 1.2 11 113-123 12-22 (36)
10 >2bg9_C Acetylcholine receptor 2.8 3.5E+02 0.01 8.4 7.5 86 33-118 2-89 (93)
No 1
>>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} (B:)
Probab=20.03 E-value=46 Score=12.61 Aligned_cols=85 Identities=6% Similarity=-0.023 Sum_probs=38.6
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-999999998631756789999999997337413-689999999852045741499999999999999999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWPEVI-AKPITDEILQVLAVPAKGLFTISALAAAYFSSNGVE 110 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp~~~-~~~i~~~l~~~~~~~~~~~~~i~~~~~l~~as~~~~ 110 (281)
||.+--++| .++++++.+++...++..+++.-.+...+--.. ...+.+.+=...+........++....+.+.+....
T Consensus 3 ~y~~~~~~P~~li~~ls~~~F~lp~~s~~r~~l~it~lL~~~~~~~~~~~~lP~~s~~~~~i~~~~~~~~~~v~~sli~~ 82 (250)
T 1oed_B 3 FYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVILS 82 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79871998899999999987150688877588636799999999999997689865753179999999999999999987
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780367|r 111 ALRISLN 117 (281)
Q Consensus 111 ~l~~~~~ 117 (281)
++...+.
T Consensus 83 ~~V~~i~ 89 (250)
T 1oed_B 83 VVVLNLH 89 (250)
T ss_dssp HHHHHHH
T ss_pred HHEEEEE
T ss_conf 5237787
No 2
>>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} (A:)
Probab=16.35 E-value=57 Score=12.17 Aligned_cols=39 Identities=5% Similarity=-0.146 Sum_probs=25.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999999-999999998631756789999999997337
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWP 71 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp 71 (281)
||.+.-.+| .+++.++.+++...+|..++..-.+...+-
T Consensus 3 fY~~~~~iP~~li~~ls~v~F~lp~~s~~r~~l~it~lL~ 42 (227)
T 1oed_A 3 YFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLS 42 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHH
T ss_conf 8987199999999999998705167887757862679999
No 3
>>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} (C:1-160)
Probab=11.16 E-value=83 Score=11.39 Aligned_cols=103 Identities=2% Similarity=-0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-999999998631756789999999997337413689-999999852045741499999999999999999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWPEVIAKP-ITDEILQVLAVPAKGLFTISALAAAYFSSNGVE 110 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp~~~~~~-i~~~l~~~~~~~~~~~~~i~~~~~l~~as~~~~ 110 (281)
||.+.-++| .++..++..++...++..+++.-.+...+.-..... +.+.+=...+.........+....+.+.+....
T Consensus 3 fY~~~~~~P~~li~~ls~~~F~lp~~s~~ri~l~it~lLs~~~~~~~~~~~lP~~S~~~p~i~~~~~~~~~~v~~sl~~~ 82 (160)
T 1oed_C 3 FYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNC 82 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 79872999999999999987050788877578637899999999999985688877664737778889999999999988
Q ss_pred HHHHHHHH-HHCCCCCCCHHHHHHHH
Q ss_conf 99999986-30236663036767999
Q gi|254780367|r 111 ALRISLNR-AYRVVEMRSWYITRLIS 135 (281)
Q Consensus 111 ~l~~~~~~-i~~~~~~r~~~~~~~~~ 135 (281)
.+..-+++ --+.++.+.+.++.+..
T Consensus 83 ~~v~~~~~~~~~~~~~~~~~r~~~~~ 108 (160)
T 1oed_C 83 GIVLNFHFRTPSTHVLSTRVKQIFLE 108 (160)
T ss_dssp HHHHHHHHHC----------------
T ss_pred HHEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 32377870388778674377868999
No 4
>>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} (G:1-72,G:245-296)
Probab=6.45 E-value=1.4e+02 Score=10.36 Aligned_cols=37 Identities=5% Similarity=0.134 Sum_probs=28.4
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9840577767521012218999999999999999999
Q gi|254780367|r 196 VHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYI 232 (281)
Q Consensus 196 ~y~~~P~~~~~~~~~~~Ga~~a~v~~~~~~~~f~~y~ 232 (281)
++.+.-+...+|.....|+.++++-..++=..+.-|+
T Consensus 77 L~~f~~~~~~~w~~~~AaavL~~iPiiivfl~~Qryl 113 (124)
T 2r6g_G 77 MQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRWL 113 (124)
T ss_dssp GGGGBCSSCBCHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999822154099999999999999999999999999
No 5
>>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} (K:1-111)
Probab=5.36 E-value=1.6e+02 Score=10.02 Aligned_cols=39 Identities=5% Similarity=-0.061 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 246789999999999999999999999999999999983
Q gi|254780367|r 238 YSTMYAGLASIMTCLVFLYMLGVFFILGAELNASMIIYY 276 (281)
Q Consensus 238 ~~~~YGsl~~ii~lllWly~~~~ill~Ga~~na~l~~~~ 276 (281)
.+..+..+-.++...++-+..+.+--.=.+.|.+.++++
T Consensus 66 ~~r~~~i~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~ 104 (111)
T 3eff_K 66 WGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHF 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999999999999
No 6
>>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} (E:212-370)
Probab=3.96 E-value=2.3e+02 Score=9.25 Aligned_cols=87 Identities=5% Similarity=-0.120 Sum_probs=37.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-999999998631756789-999999997337413-68999999985204574149999999999999999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFV-PTVIDVVFGAWPEVI-AKPITDEILQVLAVPAKGLFTISALAAAYFSSNGV 109 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~-~~~~~~i~~~lp~~~-~~~i~~~l~~~~~~~~~~~~~i~~~~~l~~as~~~ 109 (281)
||...-++| .++..++..++.-.++.. +++.-.+...+.-.. ...+.+.+-...+.........+....+-..+...
T Consensus 2 yYi~~i~iP~~liv~ls~v~Fwlp~~~~~~Ri~l~it~lLs~~~~~~~~~~~lP~~S~~~p~i~~~~~~~~~~~~~s~~~ 81 (159)
T 2bg9_E 2 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTN 81 (159)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 14787506799999997851581467766648844889999999999999768987565169999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999863
Q gi|254780367|r 110 EALRISLNRA 119 (281)
Q Consensus 110 ~~l~~~~~~i 119 (281)
..+...+++-
T Consensus 82 ~~~v~~l~~~ 91 (159)
T 2bg9_E 82 CVIVLNVSLR 91 (159)
T ss_dssp HHHHHHHTTC
T ss_pred HHHEEEEECC
T ss_conf 9750366346
No 7
>>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A* (A:110-189)
Probab=3.28 E-value=2.9e+02 Score=8.77 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=3.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780367|r 41 PFIVFGANLAG 51 (281)
Q Consensus 41 Plli~~~~i~~ 51 (281)
|++++-+.+.+
T Consensus 8 PLll~~l~Lia 18 (80)
T 2jaf_A 8 PMILLALGLLA 18 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 8
>>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus} (B:)
Probab=2.87 E-value=3.4e+02 Score=8.44 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999983
Q gi|254780367|r 256 YMLGVFFILGAELNASMIIYY 276 (281)
Q Consensus 256 y~~~~ill~Ga~~na~l~~~~ 276 (281)
|+.-..==+|-|+||.+.++-
T Consensus 7 wiaqelrrigdefna~yprrv 27 (33)
T 1pq1_B 7 RIAQELRRIGDEFNETYTRRV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999998687511031122
No 9
>>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} (A:26-36,A:118-142)
Probab=2.87 E-value=3.4e+02 Score=8.43 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=7.5
Q ss_pred HHHHHHHHCCC
Q ss_conf 99998630236
Q gi|254780367|r 113 RISLNRAYRVV 123 (281)
Q Consensus 113 ~~~~~~i~~~~ 123 (281)
.++.|+.|+++
T Consensus 12 v~avn~afgve 22 (36)
T 1t1e_A 12 VDAVNQAFGVE 22 (36)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999974981
No 10
>>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} (C:211-303)
Probab=2.84 E-value=3.5e+02 Score=8.40 Aligned_cols=86 Identities=6% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHH
Q ss_conf 999999999-99999999863175678999999999733741368999999985204574149-9999999999999999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWPEVIAKPITDEILQVLAVPAKGLF-TISALAAAYFSSNGVE 110 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp~~~~~~i~~~l~~~~~~~~~~~~-~i~~~~~l~~as~~~~ 110 (281)
||...-++| .++..++..++...+|..++..-.+...+--..............++.-..++ .+.....+...+....
T Consensus 2 yy~~~~~iP~~liv~ls~~~F~lp~~~~~ri~~~vt~lL~~~~~~~~~~~~lP~~s~~~p~i~~~~~~~~~lv~~sl~~~ 81 (93)
T 2bg9_C 2 FYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNC 81 (93)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHEEEHHHHHHHHHHHHHHHEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21210156899999998862680478777189721599999999999873588743531299999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780367|r 111 ALRISLNR 118 (281)
Q Consensus 111 ~l~~~~~~ 118 (281)
.+...+++
T Consensus 82 ~~v~~l~~ 89 (93)
T 2bg9_C 82 GIVLNFHF 89 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHEEEEC
T ss_conf 76103670
Done!