Query         gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs    119 out of 2026
Neff          8.7 
Searched_HMMs 13730
Date          Wed Jun  1 03:13:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780367.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2r6gf1 e.70.1.1 (F:13-260) Ma  91.3    0.23 1.7E-05   21.7   5.8   57  182-240    28-84  (248)
  2 d1oedc_ f.36.1.1 (C:) Acetylch   3.5 1.1E+02   0.008    8.9   7.8   29   33-61      3-32  (260)
  3 d1oede_ f.36.1.1 (E:) Acetylch   2.5 1.6E+02   0.012    8.1   6.3   38   33-70      3-42  (260)
  4 d1oeda_ f.36.1.1 (A:) Acetylch   2.2 1.9E+02   0.014    7.7   8.4   36   33-68      3-39  (227)
  5 d1oedb_ f.36.1.1 (B:) Acetylch   1.6 2.7E+02    0.02    7.0   7.2   35   33-67      3-38  (250)
  6 d2di0a1 a.5.2.4 (A:8-70) Activ   1.5   3E+02   0.022    6.8   3.6   30   59-88      6-35  (63)
  7 d1eysh2 f.23.10.1 (H:7-43) Pho   1.5 3.1E+02   0.023    6.8   4.0   19  246-264     6-24  (37)
  8 d1xl4a2 f.14.1.1 (A:23-138) In   1.3 3.6E+02   0.026    6.4   3.7   15  188-202    37-51  (116)
  9 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba   1.2   4E+02   0.029    6.2   2.1   23  104-126    61-83  (119)
 10 d1rzhh2 f.23.10.1 (H:11-35) Ph   1.0 4.6E+02   0.034    5.9   4.0   23  245-267     2-24  (26)

No 1  
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=91.33  E-value=0.23  Score=21.70  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             99999999999999984057776752101221899999999999999999986522246
Q gi|254780367|r  182 IYATMLALFIGLIFVHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYIVTFSTYST  240 (281)
Q Consensus       182 ~~~~~l~~~~~~~~~y~~~P~~~~~~~~~~~Ga~~a~v~~~~~~~~f~~y~~~~~~~~~  240 (281)
                      |....+...+.....|-+..++..++|+..||-++- +.+.+.-.+++.|++ +.||+.
T Consensus        28 ~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l-~~Fvi~Pi~yT~~ia-FTNy~t   84 (248)
T d2r6gf1          28 YLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGM-GLFVLFPLVCTIAIA-FTNYSS   84 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH-HHHTHHHHHHHHHGG-GBCCSS
T ss_pred             HHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHH-HHHHHHHHEEEEEEE-EEECCC
T ss_conf             999999999988527999726764110122389999-999997540588898-898478


No 2  
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.50  E-value=1.1e+02  Score=8.93  Aligned_cols=29  Identities=7%  Similarity=-0.035  Sum_probs=18.9

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCHHHHHH
Q ss_conf             999999999-99999999863175678999
Q gi|254780367|r   33 LSALLSVFP-FIVFGANLAGFLGAHQFVPT   61 (281)
Q Consensus        33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~   61 (281)
                      ||.+--++| .++..++++++...++..++
T Consensus         3 ~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r   32 (260)
T d1oedc_           3 FYVINFITPCVLISFLASLAFYLPAESGEK   32 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEHHHHHHHHHHHHHHHHEEECCCCCCC
T ss_conf             698729999999999999870617898873


No 3  
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.50  E-value=1.6e+02  Score=8.08  Aligned_cols=38  Identities=5%  Similarity=-0.068  Sum_probs=22.2

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCHHH-HHHHHHHHHHHC
Q ss_conf             999999999-99999999863175678-999999999733
Q gi|254780367|r   33 LSALLSVFP-FIVFGANLAGFLGAHQF-VPTVIDVVFGAW   70 (281)
Q Consensus        33 f~~llsl~P-lli~~~~i~~~~~~~~~-~~~~~~~i~~~l   70 (281)
                      ||.+--++| .++..++.+++...++. .+++.-.+.-.+
T Consensus         3 yY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lL   42 (260)
T d1oede_           3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL   42 (260)
T ss_dssp             SHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEHHHHH
T ss_conf             8987099899999999998527268888774775263999


No 4  
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.18  E-value=1.9e+02  Score=7.75  Aligned_cols=36  Identities=6%  Similarity=-0.144  Sum_probs=21.9

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             999999999-999999998631756789999999997
Q gi|254780367|r   33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFG   68 (281)
Q Consensus        33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~   68 (281)
                      ||.+--++| .++..++++++...++..+++.-.+..
T Consensus         3 yy~~~li~P~~li~~ls~~~F~lp~~s~eRi~l~it~   39 (227)
T d1oeda_           3 YFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISV   39 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             EEEEHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHH
T ss_conf             7986499999999999999815168887657750889


No 5  
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=1.62  E-value=2.7e+02  Score=7.01  Aligned_cols=35  Identities=6%  Similarity=0.026  Sum_probs=21.3

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             999999999-99999999863175678999999999
Q gi|254780367|r   33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVF   67 (281)
Q Consensus        33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~   67 (281)
                      ||.+--++| .++..++++++...++..+++.-.+.
T Consensus         3 ~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it   38 (250)
T d1oedb_           3 FYIVYTIIPCILISILAILVFYLPPDAGEKMSLSIS   38 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEHH
T ss_conf             798729999999999999870506888775786277


No 6  
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.49  E-value=3e+02  Score=6.81  Aligned_cols=30  Identities=13%  Similarity=-0.020  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             999999999733741368999999985204
Q gi|254780367|r   59 VPTVIDVVFGAWPEVIAKPITDEILQVLAV   88 (281)
Q Consensus        59 ~~~~~~~i~~~lp~~~~~~i~~~l~~~~~~   88 (281)
                      .+..+..+.+.+|+.....+..-+.....+
T Consensus         6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n   35 (63)
T d2di0a1           6 LDSLISQVKDLLPDLGEGFILACLEYYHYD   35 (63)
T ss_dssp             HHHHHHHHHHHCCSSCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             999999999985877579999999996899


No 7  
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.46  E-value=3.1e+02  Score=6.75  Aligned_cols=19  Identities=26%  Similarity=0.584  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999
Q gi|254780367|r  246 ASIMTCLVFLYMLGVFFIL  264 (281)
Q Consensus       246 ~~ii~lllWly~~~~ill~  264 (281)
                      +.+..-+.|+++.+.++.+
T Consensus         6 Aql~ly~Fw~FFagLi~YL   24 (37)
T d1eysh2           6 AQITIWAFWLFFFGLIIYL   24 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 8  
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=1.29  E-value=3.6e+02  Score=6.44  Aligned_cols=15  Identities=7%  Similarity=-0.221  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             999999999840577
Q gi|254780367|r  188 ALFIGLIFVHLFLPA  202 (281)
Q Consensus       188 ~~~~~~~~~y~~~P~  202 (281)
                      .....+..+|....+
T Consensus        37 ~~~~~fa~~y~~~~~   51 (116)
T d1xl4a2          37 VTNALFALAYLACGD   51 (116)
T ss_dssp             HHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999998720


No 9  
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.18  E-value=4e+02  Score=6.24  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999998630236663
Q gi|254780367|r  104 FSSNGVEALRISLNRAYRVVEMR  126 (281)
Q Consensus       104 ~as~~~~~l~~~~~~i~~~~~~r  126 (281)
                      +.++.=+++|++++.+|......
T Consensus        61 T~s~VERaIRhaIevaW~rG~~~   83 (119)
T d1fc3a_          61 TASRVERAIRHAIEVAWSRGNLE   83 (119)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             87999999999999999759999


No 10 
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.03  E-value=4.6e+02  Score=5.91  Aligned_cols=23  Identities=26%  Similarity=0.605  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999
Q gi|254780367|r  245 LASIMTCLVFLYMLGVFFILGAE  267 (281)
Q Consensus       245 l~~ii~lllWly~~~~ill~Ga~  267 (281)
                      +++.-+-+.|.++.-.+..+--|
T Consensus         2 laslaiw~fw~ffalli~ylqte   24 (26)
T d1rzhh2           2 LASLAIYSFWIFLAGLIYYLQTE   24 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             78889999999999999998504


Done!