Query gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 119 out of 2026 Neff 8.7 Searched_HMMs 13730 Date Wed Jun 1 03:13:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780367.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2r6gf1 e.70.1.1 (F:13-260) Ma 91.3 0.23 1.7E-05 21.7 5.8 57 182-240 28-84 (248) 2 d1oedc_ f.36.1.1 (C:) Acetylch 3.5 1.1E+02 0.008 8.9 7.8 29 33-61 3-32 (260) 3 d1oede_ f.36.1.1 (E:) Acetylch 2.5 1.6E+02 0.012 8.1 6.3 38 33-70 3-42 (260) 4 d1oeda_ f.36.1.1 (A:) Acetylch 2.2 1.9E+02 0.014 7.7 8.4 36 33-68 3-39 (227) 5 d1oedb_ f.36.1.1 (B:) Acetylch 1.6 2.7E+02 0.02 7.0 7.2 35 33-67 3-38 (250) 6 d2di0a1 a.5.2.4 (A:8-70) Activ 1.5 3E+02 0.022 6.8 3.6 30 59-88 6-35 (63) 7 d1eysh2 f.23.10.1 (H:7-43) Pho 1.5 3.1E+02 0.023 6.8 4.0 19 246-264 6-24 (37) 8 d1xl4a2 f.14.1.1 (A:23-138) In 1.3 3.6E+02 0.026 6.4 3.7 15 188-202 37-51 (116) 9 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 1.2 4E+02 0.029 6.2 2.1 23 104-126 61-83 (119) 10 d1rzhh2 f.23.10.1 (H:11-35) Ph 1.0 4.6E+02 0.034 5.9 4.0 23 245-267 2-24 (26) No 1 >d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Probab=91.33 E-value=0.23 Score=21.70 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=42.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 99999999999999984057776752101221899999999999999999986522246 Q gi|254780367|r 182 IYATMLALFIGLIFVHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYIVTFSTYST 240 (281) Q Consensus 182 ~~~~~l~~~~~~~~~y~~~P~~~~~~~~~~~Ga~~a~v~~~~~~~~f~~y~~~~~~~~~ 240 (281) |....+...+.....|-+..++..++|+..||-++- +.+.+.-.+++.|++ +.||+. T Consensus 28 ~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l-~~Fvi~Pi~yT~~ia-FTNy~t 84 (248) T d2r6gf1 28 YLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGM-GLFVLFPLVCTIAIA-FTNYSS 84 (248) T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHH-HHHTHHHHHHHHHGG-GBCCSS T ss_pred HHHHHHHHHHHHHEEEEEECCCCCCEEHHHHHHHHH-HHHHHHHHEEEEEEE-EEECCC T ss_conf 999999999988527999726764110122389999-999997540588898-898478 No 2 >d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=3.50 E-value=1.1e+02 Score=8.93 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=18.9 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHH Q ss_conf 999999999-99999999863175678999 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPT 61 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~ 61 (281) ||.+--++| .++..++++++...++..++ T Consensus 3 ~y~~n~~~P~~~~~~l~~~~f~lp~~~~~r 32 (260) T d1oedc_ 3 FYVINFITPCVLISFLASLAFYLPAESGEK 32 (260) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTC T ss_pred EEEEHHHHHHHHHHHHHHHHEEECCCCCCC T ss_conf 698729999999999999870617898873 No 3 >d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=2.50 E-value=1.6e+02 Score=8.08 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=22.2 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHH-HHHHHHHHHHHC Q ss_conf 999999999-99999999863175678-999999999733 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQF-VPTVIDVVFGAW 70 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~-~~~~~~~i~~~l 70 (281) ||.+--++| .++..++.+++...++. .+++.-.+.-.+ T Consensus 3 yY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lL 42 (260) T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42 (260) T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEHHHHH T ss_conf 8987099899999999998527268888774775263999 No 4 >d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=2.18 E-value=1.9e+02 Score=7.75 Aligned_cols=36 Identities=6% Similarity=-0.144 Sum_probs=21.9 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999999-999999998631756789999999997 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFG 68 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~ 68 (281) ||.+--++| .++..++++++...++..+++.-.+.. T Consensus 3 yy~~~li~P~~li~~ls~~~F~lp~~s~eRi~l~it~ 39 (227) T d1oeda_ 3 YFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISV 39 (227) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHEECCCCCCCEEEEHHH T ss_conf 7986499999999999999815168887657750889 No 5 >d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Probab=1.62 E-value=2.7e+02 Score=7.01 Aligned_cols=35 Identities=6% Similarity=0.026 Sum_probs=21.3 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999999-99999999863175678999999999 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVF 67 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~ 67 (281) ||.+--++| .++..++++++...++..+++.-.+. T Consensus 3 ~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it 38 (250) T d1oedb_ 3 FYIVYTIIPCILISILAILVFYLPPDAGEKMSLSIS 38 (250) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH T ss_pred EEEEEHHHHHHHHHHHHHHHHEECCCCCCCEEEEHH T ss_conf 798729999999999999870506888775786277 No 6 >d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.49 E-value=3e+02 Score=6.81 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCC Q ss_conf 999999999733741368999999985204 Q gi|254780367|r 59 VPTVIDVVFGAWPEVIAKPITDEILQVLAV 88 (281) Q Consensus 59 ~~~~~~~i~~~lp~~~~~~i~~~l~~~~~~ 88 (281) .+..+..+.+.+|+.....+..-+.....+ T Consensus 6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n 35 (63) T d2di0a1 6 LDSLISQVKDLLPDLGEGFILACLEYYHYD 35 (63) T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf 999999999985877579999999996899 No 7 >d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]} Probab=1.46 E-value=3.1e+02 Score=6.75 Aligned_cols=19 Identities=26% Similarity=0.584 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999 Q gi|254780367|r 246 ASIMTCLVFLYMLGVFFIL 264 (281) Q Consensus 246 ~~ii~lllWly~~~~ill~ 264 (281) +.+..-+.|+++.+.++.+ T Consensus 6 Aql~ly~Fw~FFagLi~YL 24 (37) T d1eysh2 6 AQITIWAFWLFFFGLIIYL 24 (37) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 8 >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Probab=1.29 E-value=3.6e+02 Score=6.44 Aligned_cols=15 Identities=7% Similarity=-0.221 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHCCC Q ss_conf 999999999840577 Q gi|254780367|r 188 ALFIGLIFVHLFLPA 202 (281) Q Consensus 188 ~~~~~~~~~y~~~P~ 202 (281) .....+..+|....+ T Consensus 37 ~~~~~fa~~y~~~~~ 51 (116) T d1xl4a2 37 VTNALFALAYLACGD 51 (116) T ss_dssp HHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999998720 No 9 >d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Probab=1.18 E-value=4e+02 Score=6.24 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999998630236663 Q gi|254780367|r 104 FSSNGVEALRISLNRAYRVVEMR 126 (281) Q Consensus 104 ~as~~~~~l~~~~~~i~~~~~~r 126 (281) +.++.=+++|++++.+|...... T Consensus 61 T~s~VERaIRhaIevaW~rG~~~ 83 (119) T d1fc3a_ 61 TASRVERAIRHAIEVAWSRGNLE 83 (119) T ss_dssp CHHHHHHHHHHHHHHHHHSSCTT T ss_pred CHHHHHHHHHHHHHHHHHCCCHH T ss_conf 87999999999999999759999 No 10 >d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]} Probab=1.03 E-value=4.6e+02 Score=5.91 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999 Q gi|254780367|r 245 LASIMTCLVFLYMLGVFFILGAE 267 (281) Q Consensus 245 l~~ii~lllWly~~~~ill~Ga~ 267 (281) +++.-+-+.|.++.-.+..+--| T Consensus 2 laslaiw~fw~ffalli~ylqte 24 (26) T d1rzhh2 2 LASLAIYSFWIFLAGLIYYLQTE 24 (26) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 78889999999999999998504 Done!