RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780367|ref|YP_003064780.1| ribonuclease protein
[Candidatus Liberibacter asiaticus str. psy62]
         (281 letters)



>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease
           protein MalF {Escherichia coli [TaxId: 562]}
          Length = 248

 Score = 26.0 bits (57), Expect = 4.0
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 173 LLLIIWNGRIYATMLALFIGLIFVHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYI 232
           ++L+   G     +  L +    +++F          + PG+      +V+  ++ T  I
Sbjct: 19  VVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGM-GLFVLFPLVCTIAI 77

Query: 233 VTFSTYST 240
             F+ YS+
Sbjct: 78  -AFTNYSS 84


>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
          protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 26.0 bits (56), Expect = 4.2
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 1  MREYFCIVFDIIYDAIEHFVEEDGWA 26
          + +   I    + + I+ F+ E+GW 
Sbjct: 52 LTQEQLIPNLAMKEVIDAFISENGWV 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.449 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,089,624
Number of extensions: 48520
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 19
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.0 bits)