HHsearch alignment for GI: 254780368 and conserved domain: cd01987
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=94.88 E-value=0.16 Score=29.97 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------HHHHHH----HHHHHCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 260136899999999855998528999971410-------158888----878507776237633654788999999999
Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------VEEVLK----NSLAMGADRGILIESNETLEPLSIAKILRE 103 (249)
Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------~~~~Lr----~alAmGaD~ai~i~d~~~~D~~~~A~~La~ 103 (249)
T Consensus 8 ~s~~s~~lir~a~rlA~~-~~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~-~~~~---~~d~---~~~I~~ 79 (124)
T cd01987 8 GGPNAERLIRRAARLADR-LKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEV-VTLP---GDDV---AEAIVE 79 (124)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEE---CCCH---HHHHHH
T ss_conf 985079999999999996-4998999999559756589799999999999999859989-9994---7998---999999
Q ss_pred HHHCCCCCEEEEEECCC
Q ss_conf 86126864999961135
Q gi|254780368|r 104 IVKKENPIIVIAGKQTT 120 (249)
Q Consensus 104 ~i~~~~~DLIl~G~~S~ 120 (249)
T Consensus 80 ~A~~~~~t~IVlG~~~~ 96 (124)
T cd01987 80 FAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHCCCCEEEECCCCC
T ss_conf 99984998999768988