Query         gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 249
No_of_seqs    134 out of 1509
Neff          6.2 
Searched_HMMs 23785
Date          Mon May 30 10:25:08 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780368.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1efp_B ETF, protein (electron  100.0       0       0  525.5  26.7  248    1-249     1-252 (252)
  2 1efv_B Electron transfer flavo 100.0       0       0  521.4  29.7  248    1-248     4-255 (255)
  3 1o97_C Electron transferring f 100.0       0       0  513.0  24.7  245    1-247     1-262 (264)
  4 3ih5_A Electron transfer flavo  99.6 1.7E-14 7.3E-19  112.0  13.5  149   33-186    15-180 (217)
  5 1o97_D Electron transferring f  99.5 1.4E-12 5.7E-17   99.8  14.1  147   34-185    13-164 (320)
  6 3fet_A Electron transfer flavo  99.2 2.1E-10 8.9E-15   85.7  11.5  133   38-186    11-144 (166)
  7 1efv_A Electron transfer flavo  98.8 4.7E-07   2E-11   64.2  15.1  142   34-187    14-161 (315)
  8 1efp_A ETF, protein (electron   98.4 1.1E-05 4.4E-10   55.5  13.1  133   41-184    16-154 (307)
  9 3mt0_A Uncharacterized protein  94.2    0.16 6.9E-06   28.5   7.0  100   35-140    16-124 (290)
 10 3dlo_A Universal stress protei  94.0    0.15 6.4E-06   28.7   6.6  100   36-140    35-152 (155)
 11 1q77_A Hypothetical protein AQ  93.4    0.26 1.1E-05   27.3   6.9   86   32-121    10-121 (138)
 12 3hgm_A Universal stress protei  93.0    0.31 1.3E-05   26.7   6.9   99   35-138    11-143 (147)
 13 3olq_A Universal stress protei  92.7    0.21 8.9E-06   27.8   5.7  102   34-139    15-145 (319)
 14 2z08_A Universal stress protei  92.5    0.46 1.9E-05   25.7   7.1   99   35-140    11-134 (137)
 15 3loq_A Universal stress protei  91.2    0.77 3.2E-05   24.2   7.8  103   32-140    28-158 (294)
 16 1mjh_A Protein (ATP-binding do  91.1    0.37 1.5E-05   26.3   5.4  101   35-140    14-155 (162)
 17 1jmv_A USPA, universal stress   89.6    0.29 1.2E-05   26.9   3.8   79   35-119    11-112 (141)
 18 2dum_A Hypothetical protein PH  89.6    0.47   2E-05   25.6   4.8  100   34-140    13-152 (170)
 19 3fg9_A Protein of universal st  87.2     1.5 6.4E-05   22.3   9.8   99   36-138    27-151 (156)
 20 2ji4_A Phosphoribosyl pyrophos  87.1     1.5 6.4E-05   22.3   9.2  134    5-142    59-220 (379)
 21 3fdx_A Putative filament prote  85.0     1.9 8.2E-05   21.6   7.9   90   37-131    14-128 (143)
 22 1dku_A Protein (phosphoribosyl  84.2     2.1 8.9E-05   21.4   9.0  131    5-141    36-195 (317)
 23 2pfs_A USP, universal stress p  82.5     2.5  0.0001   21.0   8.8   98   35-138    15-141 (150)
 24 3cis_A Uncharacterized protein  80.7     2.8 0.00012   20.6   6.0  100   34-140    27-157 (309)
 25 2ixd_A LMBE-related protein; h  79.4     3.1 0.00013   20.3   7.5   77   46-123    24-110 (242)
 26 1vl2_A Argininosuccinate synth  73.8     4.4 0.00019   19.3   8.0   96   45-144    30-153 (421)
 27 1uan_A Hypothetical protein TT  73.0     4.6  0.0002   19.2   7.0   76   47-123    23-108 (227)
 28 2p8u_A Hydroxymethylglutaryl-C  70.4     4.9 0.00021   19.0   4.3   31  109-139    94-124 (478)
 29 2dy0_A APRT, adenine phosphori  70.3     5.3 0.00022   18.8   7.1   84   82-169    31-119 (190)
 30 2qsj_A DNA-binding response re  69.6     5.5 0.00023   18.7   5.7   68   35-108    58-125 (154)
 31 2gm3_A Unknown protein; AT3G01  67.7       6 0.00025   18.5   6.9   96   39-138    27-157 (175)
 32 3dah_A Ribose-phosphate pyroph  66.4     6.4 0.00027   18.3   9.9  143    5-152    34-204 (319)
 33 2v4w_A Hydroxymethylglutaryl-C  66.4     5.5 0.00023   18.7   3.8   27  111-137    77-103 (460)
 34 1l1q_A Adenine phosphoribosylt  65.3     6.7 0.00028   18.2   6.3   87   93-183    34-130 (186)
 35 1ex0_A Coagulation factor XIII  63.1     7.3 0.00031   17.9   8.8   67   90-156   251-351 (731)
 36 1tq8_A Hypothetical protein RV  61.8     7.7 0.00033   17.8   7.6   99   35-138    26-152 (163)
 37 1u9y_A RPPK;, ribose-phosphate  59.7     8.4 0.00035   17.5   7.5  132    5-141    27-183 (284)
 38 1iow_A DD-ligase, DDLB, D-ALA\  58.9     8.7 0.00036   17.5   6.3   28  150-177   174-205 (306)
 39 3eul_A Possible nitrate/nitrit  57.4     9.2 0.00039   17.3   7.5   66   35-106    69-134 (152)
 40 3beo_A UDP-N-acetylglucosamine  57.3     5.9 0.00025   18.5   2.6   38  100-140    86-123 (375)
 41 1xpm_A 3-hydroxy-3-methylgluta  56.7     9.5  0.0004   17.2   4.1   10  110-119   132-141 (396)
 42 1kor_A Argininosuccinate synth  55.2      10 0.00042   17.1   8.0   95   47-144    18-140 (400)
 43 3a32_A Probable threonyl-tRNA   53.4      11 0.00045   16.9   4.5   66   96-166   358-426 (471)
 44 2nz2_A Argininosuccinate synth  52.4      11 0.00046   16.8   8.8   92   47-142    23-142 (413)
 45 1ysl_A HMG-COA synthase; thiol  51.2      12 0.00049   16.7   4.0   86   33-120    61-161 (402)
 46 1o57_A PUR operon repressor; p  50.8      12 0.00049   16.6   4.7   99   92-196   110-220 (291)
 47 3fk5_A 3-oxoacyl-synthase III;  49.9      12 0.00051   16.5   5.0   78   41-118    64-152 (338)
 48 1k92_A Argininosuccinate synth  48.4      13 0.00054   16.4   7.8  113    7-139     4-149 (455)
 49 3cwc_A Putative glycerate kina  48.4      13 0.00054   16.4   3.9   33   93-125   113-147 (383)
 50 3cz5_A Two-component response   47.8      13 0.00055   16.3   6.2   66   35-106    59-124 (153)
 51 2gv8_A Monooxygenase; FMO, FAD  47.7      13 0.00055   16.3   4.9   57  139-195   134-191 (447)
 52 3jpw_A Glutamate [NMDA] recept  47.7      13 0.00055   16.3   5.4   17   95-111   120-136 (363)
 53 1v4v_A UDP-N-acetylglucosamine  47.7      13 0.00055   16.3   3.4   84   53-140    31-119 (376)
 54 1to6_A Glycerate kinase; glyce  45.9      13 0.00055   16.3   2.9   35   92-126   107-143 (371)
 55 3dzc_A UDP-N-acetylglucosamine  44.7      11 0.00045   16.9   2.3   85   54-141    52-140 (396)
 56 2is8_A Molybdopterin biosynthe  43.7      15 0.00063   15.9   8.1   78   57-138     3-91  (164)
 57 1y0b_A Xanthine phosphoribosyl  43.7      15 0.00063   15.9   4.8   87   92-183    33-133 (197)
 58 1a9x_A Carbamoyl phosphate syn  43.7     9.9 0.00042   17.1   2.0   13  151-163   202-214 (1073)
 59 3iaa_A CALG2; glycosyltransfer  42.9      15 0.00065   15.8  10.3   90   42-144    37-148 (416)
 60 1g2q_A Adenine phosphoribosylt  42.2      16 0.00067   15.8   7.9   74  106-183    56-135 (187)
 61 2vpq_A Acetyl-COA carboxylase;  42.0      16 0.00067   15.7   6.3   12  151-162   194-205 (451)
 62 2ywx_A Phosphoribosylaminoimid  41.3      16 0.00069   15.7   4.5   78   59-145     2-83  (157)
 63 1q74_A 1D-MYO-inosityl 2-aceta  39.8      17 0.00073   15.5   5.8   80   35-117    12-137 (303)
 64 2f82_A HMG-COA synthase; HMGS1  37.7      19 0.00078   15.3   4.9   32   34-65     44-81  (450)
 65 3f6c_A Positive transcription   36.8      19 0.00081   15.2   6.5   66   35-106    54-119 (134)
 66 3jte_A Response regulator rece  36.2      20 0.00082   15.2   7.0   66   35-106    57-122 (143)
 67 3lma_A Stage V sporulation pro  35.8      20 0.00084   15.1   4.3   30   90-119   108-138 (347)
 68 1g0d_A Protein-glutamine gamma  35.5      19 0.00078   15.3   2.4   54   91-144   209-297 (695)
 69 1zq1_A Glutamyl-tRNA(Gln) amid  35.0      20 0.00086   15.1   7.0   72   71-145   160-238 (438)
 70 3idf_A USP-like protein; unive  34.2      21 0.00089   15.0   7.4   31   35-65     10-40  (138)
 71 1jlj_A Gephyrin; globular alph  33.5      22 0.00091   14.9   9.6   87   48-138     7-107 (189)
 72 2q3z_A Transglutaminase 2; tra  31.8      22 0.00093   14.8   2.3   55   91-145   214-303 (687)
 73 2i4l_A Proline-tRNA ligase; al  31.4      23 0.00098   14.7   7.3   69   94-168   380-450 (458)
 74 2qr6_A IMP dehydrogenase/GMP r  31.1      24   0.001   14.7   3.6   24   30-53     67-91  (393)
 75 3ouz_A Biotin carboxylase; str  30.8      24   0.001   14.6   5.9   12  151-162   199-210 (446)
 76 2pt5_A Shikimate kinase, SK; a  30.7      24   0.001   14.6   2.3   11  233-243   152-162 (168)
 77 3aek_B Light-independent proto  30.6      24   0.001   14.6   9.2   82   40-140   290-371 (525)
 78 2h06_A Ribose-phosphate pyroph  29.7      25   0.001   14.5   8.1  133    5-141    30-191 (326)
 79 3b2n_A Uncharacterized protein  29.5      25  0.0011   14.5   7.2   66   35-106    57-122 (133)
 80 2x3e_A 3-oxoacyl-[acyl-carrier  29.5      25  0.0011   14.5   3.3   42   78-119    98-142 (331)
 81 2obn_A Hypothetical protein; p  29.0      26  0.0011   14.4   4.0   45   94-146   166-210 (349)
 82 1vjj_A Protein-glutamine gluta  28.9      26  0.0011   14.4   2.8   66   91-156   209-309 (692)
 83 1kgs_A DRRD, DNA binding respo  28.7      26  0.0011   14.4   5.5   42   39-82     58-99  (225)
 84 1zuh_A Shikimate kinase; alpha  28.4      26  0.0011   14.4   2.5   14   63-76     13-27  (168)
 85 1nyr_A Threonyl-tRNA synthetas  27.6      27  0.0011   14.3   6.2   13  234-246   627-639 (645)
 86 3ot5_A UDP-N-acetylglucosamine  27.3      27  0.0012   14.2   6.0   84   55-141    56-143 (403)
 87 3dmy_A Protein FDRA; predicted  26.0      29  0.0012   14.1   3.1   42   43-88     27-68  (480)
 88 3o38_A Short chain dehydrogena  26.0      29  0.0012   14.1   8.3   73   41-116    35-108 (266)
 89 2jba_A Phosphate regulon trans  25.9      29  0.0012   14.1   5.2   64   38-107    57-122 (127)
 90 1m1n_A Nitrogenase molybdenum-  25.6      29  0.0012   14.0   8.7  100   42-143   129-252 (491)
 91 2qv5_A AGR_C_5032P, uncharacte  25.4      30  0.0012   14.0   4.5  164   30-207    56-247 (261)
 92 1ujc_A Phosphohistidine phosph  25.0      30  0.0013   14.0   2.7   84   45-136    34-121 (161)
 93 2rfl_A Putative phosphohistidi  24.9      30  0.0013   14.0   2.4   41   95-138    38-80  (173)
 94 1mkz_A Molybdenum cofactor bio  24.8      31  0.0013   13.9   7.9   44   93-136    53-96  (172)
 95 1zn8_A APRT, adenine phosphori  24.0      32  0.0013   13.8   7.8   75   92-170    34-114 (180)
 96 1o4v_A Phosphoribosylaminoimid  23.9      32  0.0013   13.8   8.2   81   59-145    16-100 (183)
 97 3kyj_B CHEY6 protein, putative  23.6      18 0.00074   15.5   0.6   27  106-132    57-83  (145)
 98 2qni_A AGR_C_517P, uncharacter  23.4      16 0.00067   15.8   0.3   34  100-139   144-179 (219)
 99 2hig_A 6-phospho-1-fructokinas  23.4      33  0.0014   13.8   2.9   61   58-119   266-327 (487)
100 2xlt_A Flavin-containing monoo  22.4      34  0.0014   13.6   4.1   53  139-191   127-181 (461)
101 2iyf_A OLED, oleandomycin glyc  22.1      34  0.0014   13.6   9.4   88   42-143    24-132 (430)
102 3hjb_A Glucose-6-phosphate iso  22.0      15 0.00065   15.9   0.0   18   35-52     80-97  (574)
103 2csu_A 457AA long hypothetical  22.0      35  0.0015   13.6   3.6   52   56-107    65-119 (457)
104 3lyh_A Cobalamin (vitamin B12)  21.9      35  0.0015   13.6   6.3   79   38-116    20-101 (126)
105 3cf4_G Acetyl-COA decarbonylas  21.8      35  0.0015   13.6   2.9   45  101-145    27-71  (170)
106 3krt_A Crotonyl COA reductase;  21.7      35  0.0015   13.6   6.1   57   55-115   253-320 (456)
107 3cu5_A Two component transcrip  21.3      36  0.0015   13.5   3.8   19  105-123    45-63  (141)
108 1ati_A Glycyl-tRNA synthetase;  21.0      36  0.0015   13.5   6.9   68   94-167   413-491 (505)
109 2dzd_A Pyruvate carboxylase; b  20.9      36  0.0015   13.4   5.2   37   80-116    49-86  (461)
110 1g5h_A Mitochondrial DNA polym  20.5      37  0.0016   13.4   6.0   71   95-168   354-426 (454)
111 1rqb_A Transcarboxylase 5S sub  20.5      37  0.0016   13.4   9.7   99   39-140   142-249 (539)
112 1xng_A NH(3)-dependent NAD(+)   20.4      37  0.0016   13.4   4.1   11  129-139    72-82  (268)
113 2jky_A Hypoxanthine-guanine ph  20.3      37  0.0016   13.4   2.2   43   97-143    16-58  (213)
114 3ff1_A Glucose-6-phosphate iso  20.1      18 0.00075   15.4  -0.0   31   45-77     68-99  (446)
115 1b0z_A Protein (phosphoglucose  20.1      20 0.00086   15.1   0.3   31   46-78     65-96  (445)

No 1  
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=100.00  E-value=0  Score=525.50  Aligned_cols=248  Identities=50%  Similarity=0.819  Sum_probs=239.9

Q ss_pred             CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf             96999860303887605980788816324877332601368999999998559985289999714101588888785077
Q gi|254780368|r    1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGA   80 (249)
Q Consensus         1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGa   80 (249)
                      |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|++|+++||||++++++||+|||||+
T Consensus         1 MkI~V~vK~VpD~~~~~~i~~~~~~~~~~~~~~~inp~D~~AlE~Al~lke~~~g~~V~v~s~G~~~~~~~lr~alamGa   80 (252)
T 1efp_B            1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGA   80 (252)
T ss_dssp             CEEEEECCEEECTTSCCCBCTTSSCBCCTTCCEEECHHHHHHHHHHHHHHTTTSCSEEEEEEEESGGGHHHHHHHHHHTC
T ss_pred             CEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCC
T ss_conf             97999999677888636883899878224683246854699999999975427980999999663787999998862379


Q ss_pred             CCCEEEECC----CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
Q ss_conf             762376336----5478899999999986126864999961135888612899999985796133244334328659999
Q gi|254780368|r   81 DRGILIESN----ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT  156 (249)
Q Consensus        81 D~ai~i~d~----~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~  156 (249)
                      |+++++.++    +++|+++||++||.++++.+|||||||+||+|+++||||+++|++|||||+|+|.+++++++.++++
T Consensus        81 d~a~~i~~~~~~~~~~d~~~ta~~la~~~~~~~~DLIl~G~~s~D~~~g~vg~~lAe~Lg~P~vt~v~~ie~~~~~~~v~  160 (252)
T 1efp_B           81 DRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVT  160 (252)
T ss_dssp             SEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEEEEECSSEEEEE
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEEECCEEEEE
T ss_conf             82699992453466778999999999998741999999983256678884216889762898135789999829979999


Q ss_pred             EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCCCCCEEEEEEECCCCCCCCEEECCHH
Q ss_conf             83589679999639889998435565454698889988521661204989076666845799951788524745537999
Q gi|254780368|r  157 REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT  236 (249)
Q Consensus       157 r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~g~~~e~~~  236 (249)
                      |+.++|+|++++++|||+||+.++|+||||||++||+|+|||+++|+++|+|++..|++++.++++|+.|++++++++++
T Consensus       161 r~~e~g~e~ve~~lPavitv~~~~n~PR~pslk~im~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~r~~~~~~~~~~  240 (252)
T 1efp_B          161 REVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVD  240 (252)
T ss_dssp             EEETTEEEEEEEESSEEEEECTTSCCCCCCCHHHHHHHTTSCEEEEEGGGGTCCCCCSEEEEEEECCCCCCCCEECSSHH
T ss_pred             EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEECCHHHCCCCCCCCEEEEEEECCCCCCCCEECCCHH
T ss_conf             99689489999459779996568787767898899986158841717999498878855999984799884885868999


Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999861769
Q gi|254780368|r  237 KLIEILKSKHDLL  249 (249)
Q Consensus       237 eLv~~L~~e~~vi  249 (249)
                      ||+++|| |++||
T Consensus       241 elv~~L~-e~gvI  252 (252)
T 1efp_B          241 ELVGKLK-EAGVI  252 (252)
T ss_dssp             HHHTTC-------
T ss_pred             HHHHHHH-HCCCC
T ss_conf             9999998-86899


No 2  
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=100.00  E-value=0  Score=521.37  Aligned_cols=248  Identities=44%  Similarity=0.732  Sum_probs=240.3

Q ss_pred             CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf             96999860303887605980788816324877332601368999999998559985289999714101588888785077
Q gi|254780368|r    1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGA   80 (249)
Q Consensus         1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGa   80 (249)
                      |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|++|+++||||+.++++||+||||||
T Consensus         4 M~I~VcvKqVpD~~~~i~~~~~~~~~~~~~~~~vinp~D~~AlE~Al~lke~~~g~~v~v~s~Gp~~a~~~Lr~ala~Ga   83 (255)
T 1efv_B            4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGA   83 (255)
T ss_dssp             CEEEEECCEEECTTSCCCBCTTSSSBCCTTCCEEECHHHHHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTC
T ss_pred             CEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCC
T ss_conf             78999988677877625884899958716985445865799999999986517984389999680788999999862689


Q ss_pred             CCCEEEECCC----CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
Q ss_conf             7623763365----478899999999986126864999961135888612899999985796133244334328659999
Q gi|254780368|r   81 DRGILIESNE----TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT  156 (249)
Q Consensus        81 D~ai~i~d~~----~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~  156 (249)
                      |+++||+++.    ..|+++++++++++++..+|||||||+||+|+++||||+++|++|||||+|+|.++++++++++++
T Consensus        84 D~a~li~d~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~i~v~  163 (255)
T 1efv_B           84 DRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVE  163 (255)
T ss_dssp             SEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEETTEEEEE
T ss_pred             CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCEEEEE
T ss_conf             80689860421235544999999999986454999999921132689890789999985887053799999979999999


Q ss_pred             EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCCCCCEEEEEEECCCCCCCCEEECCHH
Q ss_conf             83589679999639889998435565454698889988521661204989076666845799951788524745537999
Q gi|254780368|r  157 REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT  236 (249)
Q Consensus       157 r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~g~~~e~~~  236 (249)
                      |++++|+|++++++|||+||++++|+||||||++||+|+|||+++|+++|+|++..+++++.++++|+++++++++++++
T Consensus       164 r~~e~g~e~ve~~lPavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~~~~ie~~~  243 (255)
T 1efv_B          164 REIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTE  243 (255)
T ss_dssp             EEETTEEEEEEEESSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSSHH
T ss_pred             EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEECHHHCCCCCCCCCEEEEEECCCCCCCCEEEECHH
T ss_conf             99589199999559889996178777878886789986159837965899598768972799996399878980976899


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999986176
Q gi|254780368|r  237 KLIEILKSKHDL  248 (249)
Q Consensus       237 eLv~~L~~e~~v  248 (249)
                      +|+++|+++++|
T Consensus       244 elv~~L~e~g~i  255 (255)
T 1efv_B          244 DLVAKLKEIGRI  255 (255)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999976679


No 3  
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=100.00  E-value=0  Score=512.99  Aligned_cols=245  Identities=32%  Similarity=0.545  Sum_probs=226.1

Q ss_pred             CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCHHHHHHHHHHHHC
Q ss_conf             96999860303887605980788816324877332601368999999998559985-28999971410158888878507
Q gi|254780368|r    1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIAT-EVIVVSIGSCKVEEVLKNSLAMG   79 (249)
Q Consensus         1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~-~V~~lsvG~~~~~~~Lr~alAmG   79 (249)
                      |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|. +||++||||++++++||+|||||
T Consensus         1 MkI~VcvKqVpD~~~~i~i~~~~~~l~~~~~~~~iNp~D~~AlE~Al~lkE~~g~~~~Vt~ls~Gp~~a~~~Lr~alAmG   80 (264)
T 1o97_C            1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKG   80 (264)
T ss_dssp             CEEEEECCEEEEECTTCCBCTTSSSBCGGGEEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGGGHHHHHHHHHTT
T ss_pred             CEEEEEEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf             98999999677787716985899887546885436976799999999998447995699999815088899999999727


Q ss_pred             CCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEEC--CCEEEE
Q ss_conf             7762376336--547889999999998612686499996113588861289999998579613324433432--865999
Q gi|254780368|r   80 ADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKII--DNHAIV  155 (249)
Q Consensus        80 aD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~--~~~~~v  155 (249)
                      ||+++||+|+  +++|+++||++||+++++.+|||||||+||+|+++||||+++|++|||||+|+|.+++++  ++++++
T Consensus        81 aD~av~v~d~~~~~~d~~atA~~LA~~i~~~~~DLIl~G~qs~D~~tgqvg~~lAe~Lg~p~vt~v~~~~~~~~~~~~~v  160 (264)
T 1o97_C           81 ADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVI  160 (264)
T ss_dssp             CSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEECCTTCSEEEE
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCEEEE
T ss_conf             97269996057778789999999999997439999999143469998834289999819981567888887179955999


Q ss_pred             EEECCCC-EEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCC------CCCEEEEEEECCCCCCC
Q ss_conf             9835896-7999963988999843556545469888998852166120498907666------68457999517885247
Q gi|254780368|r  156 TREVGHG-TMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDL------TPRLKVLRFEENRAERK  228 (249)
Q Consensus       156 ~r~~e~g-~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~------~~~~~v~~~~~p~~~~~  228 (249)
                      +|++++| +|++++++|||+||++++|+||||||++||+|+||||++|+++|||++.      .+++++.++++|++ ++
T Consensus       161 ~r~~~~g~~e~v~~~lPavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dl~~~~~~~g~~~s~t~v~~~~~P~~-~~  239 (264)
T 1o97_C          161 RRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEK-GR  239 (264)
T ss_dssp             EEECGGGCEEEEEEESSCEEEECTTSSCCTTCC----------CCEEECTGGGTCCGGGSSGGGSSSEEEEEECCCC-CC
T ss_pred             EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECHHHCCCCHHHCCCCCCCEEEEEECCCCC-CC
T ss_conf             99917984999987899899962576765679989999973799579559994989888666689768988648988-87


Q ss_pred             CEEECC-----HHHHHHHHHHHHC
Q ss_conf             455379-----9999999998617
Q gi|254780368|r  229 GLRLYS-----TTKLIEILKSKHD  247 (249)
Q Consensus       229 g~~~e~-----~~eLv~~L~~e~~  247 (249)
                      +.++++     +++|+++|| |+|
T Consensus       240 ~~~i~g~~~e~a~~l~~~L~-e~K  262 (264)
T 1o97_C          240 ATMIEGTISEQAAKIIQIIN-EFK  262 (264)
T ss_dssp             CEECCSCHHHHHHHHHHHHH-HC-
T ss_pred             CEEEECCHHHHHHHHHHHHH-HHH
T ss_conf             35981887999999999999-850


No 4  
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=99.61  E-value=1.7e-14  Score=111.99  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=124.6

Q ss_pred             EECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             332601368999999998559985289999714101588888785077762376336--547889999999998612686
Q gi|254780368|r   33 ISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENP  110 (249)
Q Consensus        33 ~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~  110 (249)
                      -.+++...-+|..|.+|+++ .|++|+++.+|+. .++..+++.++|+|+.+++.++  ...++...+.+|++.+++.++
T Consensus        15 g~l~~~slEllt~A~~La~~-~g~~v~av~~G~~-~~~~a~~l~~~Ga~~V~~~~~~~~~~~~~~~~~~~l~~~i~~~~p   92 (217)
T 3ih5_A           15 GIVADVSLELLTKGRSLANE-LNCQLEAVVAGTG-LKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQP   92 (217)
T ss_dssp             TEECHHHHHHHHHHHHHHHH-HTCCEEEEEEESC-CTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCC
T ss_pred             CEECHHHHHHHHHHHHHHHH-CCCEEEEEEECCC-HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99988999999999999986-3990999996797-388888775238733899824300022147788899999860498


Q ss_pred             CEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCC-----------EEEEEEECCCCE--EEEEE--CCCEEEE
Q ss_conf             49999611358886128999999857961332443343286-----------599998358967--99996--3988999
Q gi|254780368|r  111 IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDN-----------HAIVTREVGHGT--MTMET--PLPAVIT  175 (249)
Q Consensus       111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~-----------~~~v~r~~e~g~--e~v~~--~lPavis  175 (249)
                      ++||+|   .+..+..+.|++|.+||+|++++|++++++++           .+.++|...+|.  .++..  ..|.++|
T Consensus        93 ~~Vl~~---~t~~gr~laprlAa~L~~~~vsdv~~l~~~~~~~~~~~~~~~~~l~~tr~~~~G~~~~tv~~~~~~p~i~T  169 (217)
T 3ih5_A           93 QICLMG---ATVIGRDLGPRVSSALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVNPEHRPQMAT  169 (217)
T ss_dssp             SEEEEE---CSHHHHHHHHHHHHHTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESSSSSCEEEECCSSSSSEEEE
T ss_pred             CEEEEC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEE
T ss_conf             689972---77405469999999859981221599982687311012223662269999528848999993599868999


Q ss_pred             EECCCCCCCCC
Q ss_conf             84355654546
Q gi|254780368|r  176 VDLNLNEPRYI  186 (249)
Q Consensus       176 v~~~~n~PR~p  186 (249)
                      +..+..+|--+
T Consensus       170 vr~g~f~~~~~  180 (217)
T 3ih5_A          170 VREGVMKKEIV  180 (217)
T ss_dssp             ECTTSSCCCCS
T ss_pred             ECCCCCCCCCC
T ss_conf             88884156767


No 5  
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=99.48  E-value=1.4e-12  Score=99.80  Aligned_cols=147  Identities=17%  Similarity=0.239  Sum_probs=124.8

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             326013689999999985599852899997141015888887850777623763365-4788999999999861268649
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNE-TLEPLSIAKILREIVKKENPII  112 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~La~~i~~~~~DL  112 (249)
                      .+++...-+|..|.+|+++ .|++|+++.+|. ..++..+++...|+|+.+++.++. ..++...+.+|++.+++.+|++
T Consensus        13 ~l~~~slEll~~A~~La~~-~g~~v~avv~G~-~~~~~a~~l~~~Gad~V~~~~~~~l~~~~~~~a~~l~~~i~~~~p~~   90 (320)
T 1o97_D           13 DLRPVSLELIGAANGLKKS-GEDKVVVAVIGS-QADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSV   90 (320)
T ss_dssp             EECTHHHHHHHHHHHHCSS-TTCEEEEEEEST-TGGGGHHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EECHHHHHHHHHHHHHHHC-CCCCEEEEEECC-CHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             9989999999999998871-799489999689-70999998755398789996682540354779999999998638988


Q ss_pred             EEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCE--EEEEEC--CCEEEEEECCCCCCCC
Q ss_conf             999611358886128999999857961332443343286599998358967--999963--9889998435565454
Q gi|254780368|r  113 VIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGT--MTMETP--LPAVITVDLNLNEPRY  185 (249)
Q Consensus       113 Il~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~--e~v~~~--lPavisv~~~~n~PR~  185 (249)
                      ||++.-   .....+.+++|.+|+.+++++++.++.+++.+..+|...+|.  .+++++  .|.++|+..+.++|--
T Consensus        91 VL~~~T---~~GrdlaprlAarL~~~~vsDv~~l~~~~~~l~~~Rp~~gG~~~a~~~~~~~~~~v~tvr~~~f~~~~  164 (320)
T 1o97_D           91 VLLPHS---VDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLE  164 (320)
T ss_dssp             EEEECS---HHHHTTHHHHHHTSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEEEEECTTSSCCCC
T ss_pred             EEEECC---CCCCCHHHHHHHHHCCCEECCCEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCC
T ss_conf             999435---45677457889984898251402101368737999840253268986248887257886476544444


No 6  
>3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=99.20  E-value=2.1e-10  Score=85.71  Aligned_cols=133  Identities=15%  Similarity=0.088  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             13689999999985599852899997141015888887850777623763365478899999999986126864999961
Q gi|254780368|r   38 FDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGK  117 (249)
Q Consensus        38 ~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~  117 (249)
                      .|...+.++..+...  .+++.++.+|..+       +.+.|+|+.++..+...  ...++..++++++  +||+||+|.
T Consensus        11 e~~~~~~~~~t~a~~--~gev~aVvvG~~~-------~~~~Ga~~v~~~~~~~~--~~~~a~~~~~~~~--~~d~Vl~~~   77 (166)
T 3fet_A           11 DDMNFLRQVNTLVAG--KGDMDSVIIGEGD-------AKGLGSKVLYRAKKGTP--FDAVSEGILKIAG--NYDYIAIGS   77 (166)
T ss_dssp             SSHHHHHHHHHHHGG--GEEEEEEEESCCC-------CTTCCCSEEEEECTTCC--HHHHHHHHHHHHT--TCSEEEEEC
T ss_pred             CCHHHHHHHHHHHHC--CCCEEEEEECCHH-------HHHCCCEEEEECCCCCH--HHHHHHHHHHHHC--CCCEEEEEC
T ss_conf             788799999998750--5966899976616-------54387419999279835--7789999999846--999999916


Q ss_pred             CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCCCCCCC
Q ss_conf             1358886128999999857961332443343286599998358967999963-98899984355654546
Q gi|254780368|r  118 QTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETP-LPAVITVDLNLNEPRYI  186 (249)
Q Consensus       118 ~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~~-lPavisv~~~~n~PR~p  186 (249)
                         +.....++|+||.+|+.|++++|++++.+++.++++|...+|....++. -|.++|+.++.++|...
T Consensus        78 ---t~~gr~~a~rlAa~l~~~~vsdv~~l~~~g~~~~~~r~~~gG~~~~~~~~~~~IvtVrpg~f~~~~~  144 (166)
T 3fet_A           78 ---TEVGREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESDARILTVAPGVIEAKDL  144 (166)
T ss_dssp             ---SHHHHHHHHHHHHHHCCCEEEEEEEEEESSSSEEEEEEEGGGTEEEEEEECCCEEEECTTSSCCCCC
T ss_pred             ---CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCC
T ss_conf             ---8326678999999969973253489986797089998802880899995598099987986247767


No 7  
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=98.78  E-value=4.7e-07  Score=64.21  Aligned_cols=142  Identities=18%  Similarity=0.176  Sum_probs=104.6

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH-HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             32601368999999998559985289999714101588888785-077762376336--547889999999998612686
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLA-MGADRGILIESN--ETLEPLSIAKILREIVKKENP  110 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alA-mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~  110 (249)
                      .++|.-.-.|..|-+|     |++|+++.+|.. .+..-.+++. .|+|+.|.+.++  +...+...+.++++.+++.+|
T Consensus        14 ~l~~~s~Ell~~A~~L-----g~~v~avv~G~~-~~~~a~~l~~~~Gad~V~~~~~~~~~~~~~e~~a~al~~~~~~~~p   87 (315)
T 1efv_A           14 SLAPITLNTITAATRL-----GGEVSCLVAGTK-CDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNY   87 (315)
T ss_dssp             EECTHHHHHHHHHHTT-----TSEEEEEEEESC-CHHHHHHHHHSTTCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHCC
T ss_pred             EECHHHHHHHHHHHHH-----CCCEEEEEECCC-CHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             9999999999999985-----897489998888-0899999851369878999458202035603457899888751485


Q ss_pred             CEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCC--EEEEEE-CCCEEEEEECCCCCCCCCC
Q ss_conf             4999961135888612899999985796133244334328659999835896--799996-3988999843556545469
Q gi|254780368|r  111 IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHG--TMTMET-PLPAVITVDLNLNEPRYIS  187 (249)
Q Consensus       111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g--~e~v~~-~lPavisv~~~~n~PR~ps  187 (249)
                      ++||+|.-.   ...-+.++||.+|+.++++.+.+++.++.   ..|...+|  ..++++ ..|.++++..+..+|.-+.
T Consensus        88 ~~VL~~~T~---~GrdlaprLAarL~~g~vsdv~~l~~~~~---~~r~~~~g~~~~~~~~~~~~~~~tvr~~~f~~~~~~  161 (315)
T 1efv_A           88 THICAGASA---FGKNLLPRVAAKLEVAPISDIIAIKSPDT---FVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATS  161 (315)
T ss_dssp             SEEEEESSH---HHHHHHHHHHHHHTCCCEEEECEEEETTE---EEEEETTTTEEEEEEECCSSEEEEECGGGSCCCCSS
T ss_pred             CEEEECCCH---HHHHHHHHHHHHCCCCCEEEEEEEECCCE---EEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf             489963774---36678999999809971516899945995---999997453179996247614887415643454455


No 8  
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=98.39  E-value=1.1e-05  Score=55.49  Aligned_cols=133  Identities=14%  Similarity=0.142  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH-CCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             89999999985599852899997141015888887850-77762376336--5478899999999986126864999961
Q gi|254780368|r   41 IALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAM-GADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGK  117 (249)
Q Consensus        41 ~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAm-GaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~  117 (249)
                      .+..+++-...+ . ++|+++.+|.. .+..-.++... |+|+.+.+.++  +..++...+.+++..+++..+  +|+|.
T Consensus        16 ~st~Ell~aAr~-l-gdv~alv~G~~-~~~~a~~l~~~~GadkV~~~d~~~l~~y~~e~~a~~l~~~~~~~~~--vL~~~   90 (307)
T 1efp_A           16 DATAKAVAAVKA-L-GDVTVLCAGAS-AKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGLAGDYSH--IAAPA   90 (307)
T ss_dssp             HHHHHHHHHHGG-G-SCEEEEEEETT-CHHHHHHHHTSTTEEEEEEEECGGGTTCCHHHHHHHHHHHHTTCSE--EEEES
T ss_pred             HHHHHHHHHHHH-H-CCCEEEEECCC-CHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE--EEEEC
T ss_conf             899999999984-0-98179998899-5799999863569878999567200124413689998753034565--99814


Q ss_pred             CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCC--EEEEEE-CCCEEEEEECCCCCCC
Q ss_conf             135888612899999985796133244334328659999835896--799996-3988999843556545
Q gi|254780368|r  118 QTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHG--TMTMET-PLPAVITVDLNLNEPR  184 (249)
Q Consensus       118 ~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g--~e~v~~-~lPavisv~~~~n~PR  184 (249)
                         .....-+.|++|.+|+.++++.+++++.++ ..  +|...+|  ..++.. ..|.++++..+...|.
T Consensus        91 ---T~~GrdlaprlAarl~~gl~ad~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~tv~~~~f~~~  154 (307)
T 1efp_A           91 ---TTDAKNVMPRVAALLDVMVLSDVSAILDAD-TF--ERPIYAGNAIQVVKSKDAKKVFTIRTASFDAA  154 (307)
T ss_dssp             ---SHHHHHHHHHHHHHTTCCEEEEESEECSSS-EE--EEEEGGGTEEEEEEECSSSEEEEECGGGSCCC
T ss_pred             ---CCCHHHHHHHHHHHHCCCCCCCCCEEECCC-EE--EEEEECCCEEEEEECCCCCCEEEEECCCCCCC
T ss_conf             ---742125778999985788545530785398-38--99997461599998268860799725766665


No 9  
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=94.16  E-value=0.16  Score=28.53  Aligned_cols=100  Identities=8%  Similarity=-0.009  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC-HHHHHHH----HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             26013689999999985599852899997141-0158888----878507776237633654788999999999861268
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSC-KVEEVLK----NSLAMGADRGILIESNETLEPLSIAKILREIVKKEN  109 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~-~~~~~Lr----~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~  109 (249)
                      -++..+.||+.|++|..+ .+.+++++++-+. +.+..|.    .+...|.+--+.+.  ...++   +..|...++..+
T Consensus        16 ~s~~~~~al~~A~~lA~~-~~a~l~~l~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---~~~I~~~a~~~~   89 (290)
T 3mt0_A           16 PDQLEGLALKRAQLIAGV-TQSHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQA--WKDSL---HQTIIAEQQAEG   89 (290)
T ss_dssp             SSCSCCHHHHHHHHHHHH-HCCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEE--CSSSH---HHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH-HCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE--CCCCH---HHHHHHHHHHCC
T ss_conf             987799999999999998-599799999804489999999999999964995589984--17987---999999999659


Q ss_pred             CCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE
Q ss_conf             6499996113588----861289999998579613
Q gi|254780368|r  110 PIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA  140 (249)
Q Consensus       110 ~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v  140 (249)
                      +|||++|.+..+.    ..|.+...+......|-+
T Consensus        90 ~dlvv~g~~~~~~~~~~~~gs~~~~ll~~~~~pvl  124 (290)
T 3mt0_A           90 CGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVL  124 (290)
T ss_dssp             CSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEE
T ss_pred             CCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf             97336446778865567778589999985899802


No 10 
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=94.02  E-value=0.15  Score=28.74  Aligned_cols=100  Identities=14%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH----------HHHHHHHHH----HHCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             60136899999999855998528999971410----------158888878----5077762376336547889999999
Q gi|254780368|r   36 NPFDEIALEESLQLREKGIATEVIVVSIGSCK----------VEEVLKNSL----AMGADRGILIESNETLEPLSIAKIL  101 (249)
Q Consensus        36 n~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~----------~~~~Lr~al----AmGaD~ai~i~d~~~~D~~~~A~~L  101 (249)
                      ++.-+.||+.|+++... .|.+++++.+=|..          .++.+.++.    ..|.+--+.+.-..+ ++   +..|
T Consensus        35 S~~s~~al~~A~~~A~~-~~~~l~lvhv~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I  109 (155)
T 3dlo_A           35 SDRAERVLRFAAEEARL-RGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGK-EP---PDDI  109 (155)
T ss_dssp             SHHHHHHHHHHHHHHHH-HTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSS-CH---HHHH
T ss_pred             CHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CH---HHHH
T ss_conf             98999999999999998-3996999997438877766789999999999999999849994899999578-98---9999


Q ss_pred             HHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE
Q ss_conf             9986126864999961135888----61289999998579613
Q gi|254780368|r  102 REIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA  140 (249)
Q Consensus       102 a~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v  140 (249)
                      .+++++.++|||++|.+.-.+-    -|.+...+......|.+
T Consensus       110 ~~~a~~~~adLIV~G~~~~~~~~~~~lGS~~~~vlr~a~~pVl  152 (155)
T 3dlo_A          110 VDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVI  152 (155)
T ss_dssp             HHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEE
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             9999872998998568999975446057699999857899999


No 11 
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=93.37  E-value=0.26  Score=27.28  Aligned_cols=86  Identities=10%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             CEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------------HHHHHHHHHHHCCCCCEEE
Q ss_conf             733260136899999999855998528999971410-------------------------1588888785077762376
Q gi|254780368|r   32 KISMNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------------VEEVLKNSLAMGADRGILI   86 (249)
Q Consensus        32 ~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------------~~~~Lr~alAmGaD~ai~i   86 (249)
                      +.-.+++.+.||+.|..+... .+.+++++++=++.                         +.+.|++.+.--......+
T Consensus        10 ~~D~s~~s~~al~~A~~la~~-~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~   88 (138)
T 1q77_A           10 LTDAYSDCEKAITYAVNFSEK-LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLTGSTEIP   88 (138)
T ss_dssp             EESTTCCCHHHHHHHHHHHTT-TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             EECCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             980998999999999998877-3984599997246211321012357764188999999999999999999842356227


Q ss_pred             ECC-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             336-54788999999999861268649999611358
Q gi|254780368|r   87 ESN-ETLEPLSIAKILREIVKKENPIIVIAGKQTTD  121 (249)
Q Consensus        87 ~d~-~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D  121 (249)
                      ... ...|+   +..|-+++++.++|||++|.+...
T Consensus        89 ~~~v~~G~~---~~~I~~~a~e~~~DlIVmG~~~~~  121 (138)
T 1q77_A           89 GVEYRIGPL---SEEVKKFVEGKGYELVVWACYPSA  121 (138)
T ss_dssp             CEEEECSCH---HHHHHHHHTTSCCSEEEECSCCGG
T ss_pred             EEECCCCCH---HHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             873136998---999999999749999999289985


No 12 
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata}
Probab=93.02  E-value=0.31  Score=26.74  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------------HHHHHHHHHHHCCCCC-----E
Q ss_conf             260136899999999855998528999971410-------------------------1588888785077762-----3
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------------VEEVLKNSLAMGADRG-----I   84 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------------~~~~Lr~alAmGaD~a-----i   84 (249)
                      .+++.++||+.|+++... .+.+++++.+-+..                         ..+.++.+...-.+..     +
T Consensus        11 ~S~~s~~al~~A~~la~~-~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (147)
T 3hgm_A           11 GSKGAVKALEKGVGLQQL-TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKV   89 (147)
T ss_dssp             SBHHHHHHHHHHHHHHHH-HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             999999999999999987-2998999998637765544323245244544799999999999999999999828997469


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----EEHHHHHHHHHCCC
Q ss_conf             7633654788999999999861268649999611358886----12899999985796
Q gi|254780368|r   85 LIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNES----NQTGQMLAALMRWP  138 (249)
Q Consensus        85 ~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~----g~v~~~lA~~Lg~p  138 (249)
                      ...-..| +   .+..|.+++++.++|||++|.+.-.+-.    |.+...+......|
T Consensus        90 ~~~v~~g-~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~~~~l~~~~~~P  143 (147)
T 3hgm_A           90 RAFVKGG-R---PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCP  143 (147)
T ss_dssp             EEEEEES-C---HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSC
T ss_pred             EEEEECC-C---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             9999637-7---8998877520358888997179998654562275999999728999


No 13 
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=92.74  E-value=0.21  Score=27.81  Aligned_cols=102  Identities=15%  Similarity=0.053  Sum_probs=58.6

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----------HH------------HHHHHHHHHHCCCCCEEEECC-
Q ss_conf             326013689999999985599852899997141-----------01------------588888785077762376336-
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSC-----------KV------------EEVLKNSLAMGADRGILIESN-   89 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~-----------~~------------~~~Lr~alAmGaD~ai~i~d~-   89 (249)
                      -.++.++.||+.|.+|..+ .+.+++++.+-+.           ..            ...+++.+....+..+.+... 
T Consensus        15 D~s~~~~~al~~A~~lA~~-~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v   93 (319)
T 3olq_A           15 DPNQDDQPALRRAVYIVQR-NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKV   93 (319)
T ss_dssp             CTTCSCCHHHHHHHHHHHH-HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             6988899999999999998-099799999974687533344570156899999999999999999987775499558999


Q ss_pred             -CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCC
Q ss_conf             -5478899999999986126864999961135888----6128999999857961
Q gi|254780368|r   90 -ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQ  139 (249)
Q Consensus        90 -~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~  139 (249)
                       ...++.   ..|...++..++|||++|.+..++-    .|.+.-.+......|-
T Consensus        94 ~~~~~~~---~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gS~~~~ll~~~~~PV  145 (319)
T 3olq_A           94 IWHNRPY---EAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPV  145 (319)
T ss_dssp             EECSCHH---HHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCE
T ss_pred             EECCCHH---HHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHCCCCE
T ss_conf             9868858---999999996598889741568763123304407899997379978


No 14 
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=92.45  E-value=0.46  Score=25.69  Aligned_cols=99  Identities=18%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------HHHHHHHHHHHCCC--CCEEEECCCCCC
Q ss_conf             260136899999999855998528999971410-------------------15888887850777--623763365478
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------VEEVLKNSLAMGAD--RGILIESNETLE   93 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------~~~~Lr~alAmGaD--~ai~i~d~~~~D   93 (249)
                      .++..+.|++.|.++... .+++++++++=++.                   +.+.|.+.......  .-.++.  .+ +
T Consensus        11 ~s~~s~~al~~a~~la~~-~~~~i~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~g-~   86 (137)
T 2z08_A           11 GSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLL--EG-V   86 (137)
T ss_dssp             SSHHHHHHHHHHHHHHHH-HTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEEEE--ES-S
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CC-C
T ss_conf             998999999999999998-3998999998425664467510689999999999999999998569970799998--26-6


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE
Q ss_conf             89999999998612686499996113588----861289999998579613
Q gi|254780368|r   94 PLSIAKILREIVKKENPIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA  140 (249)
Q Consensus        94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v  140 (249)
                         .+..|-..++..++|||++|.+.-.+    -.|.+...+......|-+
T Consensus        87 ---~~~~I~~~a~~~~~dliV~G~~~~s~~~~~~~Gs~~~~vl~~~~~pVl  134 (137)
T 2z08_A           87 ---PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVL  134 (137)
T ss_dssp             ---HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEE
T ss_pred             ---HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             ---489899876635688899945899876555037399999970699899


No 15 
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=91.22  E-value=0.77  Score=24.22  Aligned_cols=103  Identities=17%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             CEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC---------------------HHHHHHHHHHHHCCCCCEEEECC-
Q ss_conf             73326013689999999985599852899997141---------------------01588888785077762376336-
Q gi|254780368|r   32 KISMNPFDEIALEESLQLREKGIATEVIVVSIGSC---------------------KVEEVLKNSLAMGADRGILIESN-   89 (249)
Q Consensus        32 ~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~---------------------~~~~~Lr~alAmGaD~ai~i~d~-   89 (249)
                      +.-.++...+|++.|..|..+ .+.+++++.+-+.                     .+++.|.+...+-....+.+.-. 
T Consensus        28 p~D~S~~s~~al~~A~~la~~-~~~~i~llhvi~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~  106 (294)
T 3loq_A           28 PTDLSENSFKVLEYLGDFKKV-GVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIK  106 (294)
T ss_dssp             ECCSCTGGGGGGGGHHHHHHT-TCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECS
T ss_pred             EECCCHHHHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             968998999999999999987-6998999999888654444454566889999999999999999865543498569999


Q ss_pred             --CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE
Q ss_conf             --547889999999998612686499996113588----861289999998579613
Q gi|254780368|r   90 --ETLEPLSIAKILREIVKKENPIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA  140 (249)
Q Consensus        90 --~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v  140 (249)
                        ...++...   |.+.  ..++|||++|.+....    -.|.+.-.+....+.|.+
T Consensus       107 ~~~~G~~~~~---i~~~--~~~~DLIVmG~~g~~~~~~~~~GS~~~~vl~~~~~Pvl  158 (294)
T 3loq_A          107 PFPAGDPVVE---IIKA--SENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVY  158 (294)
T ss_dssp             SCCEECHHHH---HHHH--HTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEE
T ss_pred             EEECCCHHHH---HHHH--HHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf             9844988999---9999--74699999877788985103369814778873789779


No 16 
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=91.15  E-value=0.37  Score=26.30  Aligned_cols=101  Identities=22%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-----------------------HHHHHHHHH------------HHC
Q ss_conf             260136899999999855998528999971410-----------------------158888878------------507
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-----------------------VEEVLKNSL------------AMG   79 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-----------------------~~~~Lr~al------------AmG   79 (249)
                      .++..+.|++.|..+..+ .+.+++++++=+..                       ....+++.+            ..-
T Consensus        14 ~S~~s~~al~~a~~~A~~-~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~   92 (162)
T 1mjh_A           14 FSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL   92 (162)
T ss_dssp             SCHHHHHHHHHHHHTCCS-SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             998999999999999874-4996999998425655544332222453322201778899999999999999999999988


Q ss_pred             CCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE
Q ss_conf             7762376336--5478899999999986126864999961135888----61289999998579613
Q gi|254780368|r   80 ADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA  140 (249)
Q Consensus        80 aD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v  140 (249)
                      -+..+.+...  .| +   .+..|.+++++.++|||++|.+...+-    -|.+.-.+......|-+
T Consensus        93 ~~~~v~~~~~~~~G-~---~~~~I~~~a~~~~~DlIVvG~~~~~~~~~~~~GS~s~~l~~~a~~PVl  155 (162)
T 1mjh_A           93 EDVGFKVKDIIVVG-I---PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVL  155 (162)
T ss_dssp             HHTTCEEEEEEEEE-C---HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEE
T ss_pred             HHCCCEEEEEEEEC-C---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEE
T ss_conf             76597699999936-7---899999873356589899847899865546107499999960899999


No 17 
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=89.60  E-value=0.29  Score=26.91  Aligned_cols=79  Identities=8%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH------------------HHHHHHHHHHCCCCC-----EEEECCCC
Q ss_conf             2601368999999998559985289999714101------------------588888785077762-----37633654
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKV------------------EEVLKNSLAMGADRG-----ILIESNET   91 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~------------------~~~Lr~alAmGaD~a-----i~i~d~~~   91 (249)
                      -++..+.|++.|.++..+ .+++++++++=+...                  .+.+++.++-..++.     ..+. ..+
T Consensus        11 ~s~~s~~al~~A~~la~~-~~a~l~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   88 (141)
T 1jmv_A           11 LSEESPILLKKAVGIAKR-HDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLS-GSG   88 (141)
T ss_dssp             CSTTHHHHHHHHHHHHHH-HTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEE-EEE
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEC
T ss_conf             998999999999999987-499489999984103332233455579999999999999999999871776289999-606


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             7889999999998612686499996113
Q gi|254780368|r   92 LEPLSIAKILREIVKKENPIIVIAGKQT  119 (249)
Q Consensus        92 ~D~~~~A~~La~~i~~~~~DLIl~G~~S  119 (249)
                          ..+..|...+++.++|||+.|.+.
T Consensus        89 ----~~~~~i~~~~~~~~~dliVvG~~~  112 (141)
T 1jmv_A           89 ----DLGQVLSDAIEQYDVDLLVTGHHQ  112 (141)
T ss_dssp             ----CHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ----CHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             ----747889999872788889993289


No 18 
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3}
Probab=89.56  E-value=0.47  Score=25.62  Aligned_cols=100  Identities=14%  Similarity=0.057  Sum_probs=59.1

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH----------------------HHHHH--------HHHHHH-----
Q ss_conf             3260136899999999855998528999971410----------------------15888--------887850-----
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCK----------------------VEEVL--------KNSLAM-----   78 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~----------------------~~~~L--------r~alAm-----   78 (249)
                      -.++..++|++.|+++... .+.+++++.+=++.                      ..+.+        ++....     
T Consensus        13 D~S~~s~~a~~~a~~la~~-~~a~l~llhVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (170)
T 2dum_A           13 DFSEGAYRAVEVFEKRNKM-EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAF   91 (170)
T ss_dssp             CSSHHHHHHHHHHHHHCCS-CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4998999999999999876-399799999963753233345433345410233799999999999999999999888757


Q ss_pred             -CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE
Q ss_conf             -777623763365478899999999986126864999961135888----61289999998579613
Q gi|254780368|r   79 -GADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA  140 (249)
Q Consensus        79 -GaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v  140 (249)
                       +.+--+++.  .| ++   +..|.+.+++.++|||++|.+.-..-    -|.+...+......|.+
T Consensus        92 ~~~~v~~~i~--~G-~~---~~~I~~~a~~~~~DliVmG~~g~~~~~~~l~GS~~~~vl~~~~~pVL  152 (170)
T 2dum_A           92 RAKNVRTIIR--FG-IP---WDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVL  152 (170)
T ss_dssp             TCSEEEEEEE--EE-CH---HHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEE
T ss_pred             CCCCEEEEEE--EC-CH---HHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHCCCCEE
T ss_conf             9975799998--26-67---88520120256567899805899966445037599999970999999


No 19 
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=87.17  E-value=1.5  Score=22.33  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------HHHHHHH----HHHHCCCCCEEEECCCCC
Q ss_conf             60136899999999855998528999971410-------------------1588888----785077762376336547
Q gi|254780368|r   36 NPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------VEEVLKN----SLAMGADRGILIESNETL   92 (249)
Q Consensus        36 n~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------~~~~Lr~----alAmGaD~ai~i~d~~~~   92 (249)
                      +++...|++.|+++..+ .+.+++++.+=+..                   .++.++.    +...|......+....+ 
T Consensus        27 s~~s~~al~~A~~lA~~-~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-  104 (156)
T 3fg9_A           27 NTSSERAFRYATTLAHD-YDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGG-  104 (156)
T ss_dssp             CHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECS-
T ss_pred             CHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-
T ss_conf             99999999999999876-3888999986314322530113877999999999999999999887606764048998427-


Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC---EEHHHHHHHHHCCC
Q ss_conf             88999999999861268649999611358886---12899999985796
Q gi|254780368|r   93 EPLSIAKILREIVKKENPIIVIAGKQTTDNES---NQTGQMLAALMRWP  138 (249)
Q Consensus        93 D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~---g~v~~~lA~~Lg~p  138 (249)
                      ++..  .++..+++..++|||++|.+...+-.   |.+...+......|
T Consensus       105 ~~~~--~il~~~a~~~~~DLiV~G~~~~~~~~~~lGs~~~~v~~~a~~p  151 (156)
T 3fg9_A          105 DVDD--VILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPIS  151 (156)
T ss_dssp             CHHH--HHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSE
T ss_pred             CCHH--HHHHCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             8237--5410237772998999817899860000375999999619999


No 20 
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=87.07  E-value=1.5  Score=22.30  Aligned_cols=134  Identities=18%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE-------------ECCCHH
Q ss_conf             986030388760598078881632487733260136899999---9998559985289999-------------714101
Q gi|254780368|r    5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS-------------IGSCKV   68 (249)
Q Consensus         5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls-------------vG~~~~   68 (249)
                      +.+++-||-+..+++...-.+-+-=-+...-+|-+++-+|.-   --+|+. +..+||++.             -|+..+
T Consensus        59 ~~~~~FpDGE~~v~i~e~Vrg~dV~iiqs~~~~~nd~lmELll~i~Alr~~-gA~~ItlViPYl~YsRQDr~~~~~~i~a  137 (379)
T 2ji4_A           59 VQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTS-CAKSIIGVIPYFPYSKQCKMRKRGSIVS  137 (379)
T ss_dssp             EEEEECTTSCEEEEECSCCTTCEEEEECCCCSCHHHHHHHHHHHHHHHHHT-TCSEEEEECSSCSSCCC-------CCHH
T ss_pred             EEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf             388987999789987987689838999689998158999999999999874-0564799933553340540003564068


Q ss_pred             HHHHHHHHHHCCCCCEEEECC----CC-C----CHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCEEHHHHHHHHHC
Q ss_conf             588888785077762376336----54-7----88999999999861268---649999611358886128999999857
Q gi|254780368|r   69 EEVLKNSLAMGADRGILIESN----ET-L----EPLSIAKILREIVKKEN---PIIVIAGKQTTDNESNQTGQMLAALMR  136 (249)
Q Consensus        69 ~~~Lr~alAmGaD~ai~i~d~----~~-~----D~~~~A~~La~~i~~~~---~DLIl~G~~S~D~~~g~v~~~lA~~Lg  136 (249)
                      ....+...++|+|+.+.+.-.    .+ +    +.......++.++++..   -+.|+.   |.|.++..-.-.+|+.|+
T Consensus       138 ~~va~~L~~~gvd~vitvDlH~~~i~~ff~~p~~~l~~~~~~~~~~~~~~~~~~~~VvV---sPD~Ga~kRa~~~a~~L~  214 (379)
T 2ji4_A          138 KLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIV---AKSPASAKRAQSFAERLR  214 (379)
T ss_dssp             HHHHHHHHHTTCCEEEEESCSSGGGGGGSSSCEEEECCHHHHHHHHHHHSTTGGGEEEE---ESSGGGHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE---CCCCCHHHHHHHHHHHHC
T ss_conf             89987887528763224532767763277899775323076899999851565676464---389778999999999859


Q ss_pred             CCCEEE
Q ss_conf             961332
Q gi|254780368|r  137 WPQATF  142 (249)
Q Consensus       137 ~p~vt~  142 (249)
                      .|+...
T Consensus       215 ~~~~~~  220 (379)
T 2ji4_A          215 LGIAVI  220 (379)
T ss_dssp             CEEEEE
T ss_pred             CCEEEE
T ss_conf             996899


No 21 
>3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=84.96  E-value=1.9  Score=21.63  Aligned_cols=90  Identities=14%  Similarity=0.017  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH-----------------------HHHHHHHHHHCCCCCEEEE--CCCC
Q ss_conf             01368999999998559985289999714101-----------------------5888887850777623763--3654
Q gi|254780368|r   37 PFDEIALEESLQLREKGIATEVIVVSIGSCKV-----------------------EEVLKNSLAMGADRGILIE--SNET   91 (249)
Q Consensus        37 ~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~-----------------------~~~Lr~alAmGaD~ai~i~--d~~~   91 (249)
                      .+-+.|++.|.+|... .+.++.++.+-+...                       .+.+++....-......+.  ...|
T Consensus        14 ~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G   92 (143)
T 3fdx_A           14 EFTERIISHVESEARI-DDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEG   92 (143)
T ss_dssp             SCCTTHHHHHHHHHHH-HTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf             8999999999999987-599899999526754444433342101079999999999999999987057995599999628


Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH
Q ss_conf             7889999999998612686499996113588861289999
Q gi|254780368|r   92 LEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML  131 (249)
Q Consensus        92 ~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l  131 (249)
                       +   .+..|...+++.++|||++|.+.........|.-.
T Consensus        93 -~---~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~GS~~  128 (143)
T 3fdx_A           93 -S---PKDKILALAKSLPADLVIIASHRPDITTYLLGSNA  128 (143)
T ss_dssp             -C---HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHH
T ss_pred             -C---HHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCHH
T ss_conf             -8---78999999987345458973578887766608599


No 22 
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=84.17  E-value=2.1  Score=21.40  Aligned_cols=131  Identities=21%  Similarity=0.246  Sum_probs=80.7

Q ss_pred             EEEEEECCCCCCEEECCCCC--EEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE--ECC-----------C
Q ss_conf             98603038876059807888--1632487733260136899999---9998559985289999--714-----------1
Q gi|254780368|r    5 VPIKGVINYNTKVRIKNDYS--GIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS--IGS-----------C   66 (249)
Q Consensus         5 V~vK~VpD~~~~i~i~~~~~--~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls--vG~-----------~   66 (249)
                      +.+++-||-+..+++..+-.  .+-  -+...-+|-|++-+|.-   --+|+. +...|+++.  ++-           +
T Consensus        36 ~~~~~FpDGE~~v~i~~~vrg~~V~--ivqs~~~~~nd~l~eLll~~~a~r~~-gA~~I~~ViPYl~YsRQDr~~~~ge~  112 (317)
T 1dku_A           36 CSVTRFSDGEVQINIEESIRGCDCY--IIQSTSDPVNEHIMELLIMVDALKRA-SAKTINIVIPYYGYARQDRKARSREP  112 (317)
T ss_dssp             EEEEECTTSCEEEEECSCCTTCEEE--EECCCCSSHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTTTTCCSCSSTTCC
T ss_pred             EEEEECCCCCEEEEECCCCCCCEEE--EEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEECHHCCCCCC
T ss_conf             3788889997799878877898699--99678999427799999999999868-99559999366643320000279987


Q ss_pred             HHHHHHHHHH-HHCCCCCEEEECC----CC-----CCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCEEHHHHHHHHH
Q ss_conf             0158888878-5077762376336----54-----788999999999861268-64999961135888612899999985
Q gi|254780368|r   67 KVEEVLKNSL-AMGADRGILIESN----ET-----LEPLSIAKILREIVKKEN-PIIVIAGKQTTDNESNQTGQMLAALM  135 (249)
Q Consensus        67 ~~~~~Lr~al-AmGaD~ai~i~d~----~~-----~D~~~~A~~La~~i~~~~-~DLIl~G~~S~D~~~g~v~~~lA~~L  135 (249)
                      -+...+=+.| ++|+|+.+.+.-.    .+     .+.......++++++..+ .+.++.   |.|.++.+-.-.+|+.|
T Consensus       113 isak~va~lL~~~g~d~vit~DlH~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~vvV---aPD~Ga~~ra~~~A~~l  189 (317)
T 1dku_A          113 ITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIV---SPDHGGVTRARKLADRL  189 (317)
T ss_dssp             CHHHHHHHHHHHHTCCEEEEESCSSGGGGGGCSSCEEEECSHHHHHHHHHTTTCCSEEEE---ESSGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEE---CCCCCHHHHHHHHHHHC
T ss_conf             059999988762499779996368487750435774100021467777764075555477---89943799999999982


Q ss_pred             CCCCEE
Q ss_conf             796133
Q gi|254780368|r  136 RWPQAT  141 (249)
Q Consensus       136 g~p~vt  141 (249)
                      |.|+..
T Consensus       190 ~~~~~~  195 (317)
T 1dku_A          190 KAPIAI  195 (317)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
T ss_conf             999899


No 23 
>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718}
Probab=82.46  E-value=2.5  Score=20.97  Aligned_cols=98  Identities=11%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-----------------HHHHH--------HH-HHHHCCCCCEEEEC
Q ss_conf             260136899999999855998528999971410-----------------15888--------88-78507776237633
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-----------------VEEVL--------KN-SLAMGADRGILIES   88 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-----------------~~~~L--------r~-alAmGaD~ai~i~d   88 (249)
                      .++.+..||+.|+.|... .+.+++++++=+..                 ..+.+        .+ +-..|......+. 
T Consensus        15 ~s~~s~~al~~A~~lA~~-~~a~l~~lhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-   92 (150)
T 2pfs_A           15 FSSEDSQVVQKVRNLASQ-IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWL-   92 (150)
T ss_dssp             CCTTHHHHHHHHHHHHHH-HTCEEEEEEEEC----------CCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEE-
T ss_pred             CCHHHHHHHHHHHHHHHH-HCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-
T ss_conf             998999999999999998-199788668985144554444445542379999999999999999989854997527999-


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC---EEHHHHHHHHHCCC
Q ss_conf             654788999999999861268649999611358886---12899999985796
Q gi|254780368|r   89 NETLEPLSIAKILREIVKKENPIIVIAGKQTTDNES---NQTGQMLAALMRWP  138 (249)
Q Consensus        89 ~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~---g~v~~~lA~~Lg~p  138 (249)
                      ..+ +   .+..|...+++.++|||++|.+.-.+-.   |.+.-.+......|
T Consensus        93 ~~g-~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~lGS~~~~v~~~s~~p  141 (150)
T 2pfs_A           93 VWG-E---PREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCD  141 (150)
T ss_dssp             EES-C---HHHHHHHHHHHTTCSEEEEEEC----------CHHHHHHHHCSSE
T ss_pred             EEC-C---HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             818-8---899999999863876798727999965265177899998536989


No 24 
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=80.67  E-value=2.8  Score=20.57  Aligned_cols=100  Identities=13%  Similarity=0.149  Sum_probs=54.0

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH--------------------HHHHHHHHHH----CCCC---CEEE
Q ss_conf             32601368999999998559985289999714101--------------------5888887850----7776---2376
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKV--------------------EEVLKNSLAM----GADR---GILI   86 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~--------------------~~~Lr~alAm----GaD~---ai~i   86 (249)
                      --++.-++|+|.|++|... .|.+++++.+=++..                    +..+++++..    +...   .+..
T Consensus        27 DgS~~s~~Al~~Aa~lA~~-~ga~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~  105 (309)
T 3cis_A           27 DDSPAAQVAVRWAARDAEL-RKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHS  105 (309)
T ss_dssp             CSSHHHHHHHHHHHHHHHH-HTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             9998899999999999998-699799999985654344455676456799999999999999999998623248963999


Q ss_pred             ECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCEEHHHHHHHHHCCCCE
Q ss_conf             33654788999999999861268649999611358----8861289999998579613
Q gi|254780368|r   87 ESNETLEPLSIAKILREIVKKENPIIVIAGKQTTD----NESNQTGQMLAALMRWPQA  140 (249)
Q Consensus        87 ~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D----~~~g~v~~~lA~~Lg~p~v  140 (249)
                      .-..+ ++.   ..|....+  ++|||++|.+...    .-.|.+.-.+...-..|.+
T Consensus       106 ~v~~G-~~~---~~i~~~A~--~adlIVmG~~g~~~~~~~llGS~~~~vl~~~~~PVl  157 (309)
T 3cis_A          106 EIVPA-AAV---PTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVV  157 (309)
T ss_dssp             EEESS-CHH---HHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEE
T ss_pred             EEEEC-CHH---HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf             99856-989---99999855--899899925778753344236732888874568737


No 25 
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=79.40  E-value=3.1  Score=20.31  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             HHHHHHCCCCCCEEEEEECCC--------HHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             999985599852899997141--------01588888785077762376336--54788999999999861268649999
Q gi|254780368|r   46 SLQLREKGIATEVIVVSIGSC--------KVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIA  115 (249)
Q Consensus        46 Al~lke~~~g~~V~~lsvG~~--------~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~  115 (249)
                      -.++++++....++++|-|..        +.++..+-+-.+|++.-+.+.-.  ...+.....+.|...|++..||+||+
T Consensus        24 lak~~~~G~~V~vv~lT~G~~~~~~~~~~R~~E~~~A~~~LGv~~~~~l~~~D~~~~~~~e~~~~l~~~i~~~~Pd~V~t  103 (242)
T 2ixd_A           24 IAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFA  103 (242)
T ss_dssp             HHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred             HHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             99999779919999973897786641677999999999863975033167885444669999999999975405447874


Q ss_pred             EECCCCCC
Q ss_conf             61135888
Q gi|254780368|r  116 GKQTTDNE  123 (249)
Q Consensus       116 G~~S~D~~  123 (249)
                      -. ..|..
T Consensus       104 ~~-~~D~h  110 (242)
T 2ixd_A          104 PY-YEDRH  110 (242)
T ss_dssp             EC-SCSSS
T ss_pred             CC-CCCCC
T ss_conf             68-88878


No 26 
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=73.84  E-value=4.4  Score=19.34  Aligned_cols=96  Identities=25%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             HHHHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECCC------------------C--C-----CHHH
Q ss_conf             9999985599852899997--1-41015888887850777623763365------------------4--7-----8899
Q gi|254780368|r   45 ESLQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESNE------------------T--L-----EPLS   96 (249)
Q Consensus        45 ~Al~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~~------------------~--~-----D~~~   96 (249)
                      .+..|+|+  |.+|+++++  | +.+.+..-++|+..||.+.+.+..++                  +  .     .-..
T Consensus        30 ~l~~L~e~--g~eVi~~~~d~Gq~ed~~~~~~kA~~~GA~~~~v~D~r~ef~~~~i~p~I~ana~ye~~Y~l~tslaRpl  107 (421)
T 1vl2_A           30 ILKWLCEK--GFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPL  107 (421)
T ss_dssp             HHHHHHHT--TCEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHH
T ss_pred             HHHHHHHC--CCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf             99999877--9979999997997677899999999849968999860999999999999966887678653421111589


Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE
Q ss_conf             999999986126864999961135888612899999985796133244
Q gi|254780368|r   97 IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS  144 (249)
Q Consensus        97 ~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~  144 (249)
                      +|+.+..+.++.+.|.|.-|  ++-.++-||-.-++-..=.|.+..+.
T Consensus       108 ia~~~v~~A~~~ga~~iaHG--~TGkGNDQvRFe~~~~aL~p~~~iia  153 (421)
T 1vl2_A          108 IAKRQVEIAEKEGAQYVAHG--ATGKGNDQVRFELTYAALNPNLKVIS  153 (421)
T ss_dssp             HHHHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTSEEEC
T ss_pred             HHHHHHHHHHHHCCCEEECC--CCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             99999999997087488336--52477754107777987289763158


No 27 
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=72.96  E-value=4.6  Score=19.20  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             HHHHHCCCCCCEEEEEECCC--------HHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             99985599852899997141--------01588888785077762376336--547889999999998612686499996
Q gi|254780368|r   47 LQLREKGIATEVIVVSIGSC--------KVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAG  116 (249)
Q Consensus        47 l~lke~~~g~~V~~lsvG~~--------~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G  116 (249)
                      .++++++....|..+|-|..        +.++..+-+-.+|++....+.-+  .-.+.......|.+.+++..||+|++=
T Consensus        23 ak~~~~G~~V~vv~~T~G~~g~~~~~~~R~~E~~~a~~~lG~~~~~~L~~~d~~l~~~~~~~~~l~~~i~~~~PdiV~t~  102 (227)
T 1uan_A           23 ARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAP  102 (227)
T ss_dssp             HHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTCSEEEEEEECTTCCCCCHHHHHHHHHHHHHHCEEEEEEE
T ss_pred             HHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECC
T ss_conf             99998699099999738977889889999999987776415440125655786544688899899999984399689807


Q ss_pred             ECCCCCC
Q ss_conf             1135888
Q gi|254780368|r  117 KQTTDNE  123 (249)
Q Consensus       117 ~~S~D~~  123 (249)
                       ...|..
T Consensus       103 -~~~d~H  108 (227)
T 1uan_A          103 -LEADRH  108 (227)
T ss_dssp             -CSCCSS
T ss_pred             -CCCCCC
T ss_conf             -988887


No 28 
>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens}
Probab=70.44  E-value=4.9  Score=19.03  Aligned_cols=31  Identities=16%  Similarity=0.023  Sum_probs=22.4

Q ss_pred             CCCEEEEEECCCCCCCEEHHHHHHHHHCCCC
Q ss_conf             8649999611358886128999999857961
Q gi|254780368|r  109 NPIIVIAGKQTTDNESNQTGQMLAALMRWPQ  139 (249)
Q Consensus       109 ~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~  139 (249)
                      ..|+|++|..|.|..+-.+..++...||++.
T Consensus        94 ~Id~li~aT~s~~~~~ps~a~~v~~~Lg~~~  124 (478)
T 2p8u_A           94 CIGRLEVGTETIIDKSKSVKTNLMQLFEESG  124 (478)
T ss_dssp             GEEEEEEECSCCSCSSSCHHHHHGGGTTTTT
T ss_pred             HCCEEEEEECCCCCCCCCHHHHHHHHHCCCC
T ss_conf             9999999916888778758999998723567


No 29 
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=70.26  E-value=5.3  Score=18.82  Aligned_cols=84  Identities=18%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             CCEEEECCC--CCCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
Q ss_conf             623763365--4788---99999999986126864999961135888612899999985796133244334328659999
Q gi|254780368|r   82 RGILIESNE--TLEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT  156 (249)
Q Consensus        82 ~ai~i~d~~--~~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~  156 (249)
                      ++|...|=.  -.||   ..+.+.+++.++..++|.|+| -   +...=.+++.+|..||.|.+---..-..-+......
T Consensus        31 ~Gi~f~Di~~il~dP~~~~~v~~~la~~~~~~~~D~Iv~-~---e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~  106 (190)
T 2dy0_A           31 PGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVG-T---EARGFLFGAPVALGLGVGFVPVRKPGKLPRETISET  106 (190)
T ss_dssp             TTCCEEETHHHHHCHHHHHHHHHHHHHHHTTTTCCEEEE-E---TTHHHHHHHHHHHHHTCEEEEEBSTTCCCSCEEEEE
T ss_pred             CCCEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE-C---CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEE
T ss_conf             995799698276699999999999999840689999997-3---534312068999975998698755798888606899


Q ss_pred             EECCCCEEEEEEC
Q ss_conf             8358967999963
Q gi|254780368|r  157 REVGHGTMTMETP  169 (249)
Q Consensus       157 r~~e~g~e~v~~~  169 (249)
                      ...+.+..+.++.
T Consensus       107 ~~~~~~~~~~~i~  119 (190)
T 2dy0_A          107 YDLEYGTDQLEIH  119 (190)
T ss_dssp             EEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEE
T ss_conf             9886037888986


No 30 
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=69.64  E-value=5.5  Score=18.73  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf             26013689999999985599852899997141015888887850777623763365478899999999986126
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKE  108 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~  108 (249)
                      +|-.|.+.+|..-+||+......|.++|.  ....+..++|+..||+. |+..   ..++-....+|..+.+..
T Consensus        58 ~~mP~~~G~e~l~~ir~~~p~~~iivlT~--~~~~~~~~~a~~~Ga~g-yl~K---~~~~~~L~~aI~~v~~g~  125 (154)
T 2qsj_A           58 VNLPDAEAIDGLVRLKRFDPSNAVALISG--ETDHELIRAALEAGADG-FIPK---SADPQVLIHAVSLILEGE  125 (154)
T ss_dssp             C------CHHHHHHHHHHCTTSEEEEC-------CHHHHHHHHTTCCB-BCCT---TSCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEEE--ECCHHHHHHHHHCCCCE-EEEC---CCCHHHHHHHHHHHHCCC
T ss_conf             88899888999999998788997999980--28999999999859988-9979---999999999999998799


No 31 
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=67.69  E-value=6  Score=18.48  Aligned_cols=96  Identities=13%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHCCCCC--CEEEEEECCCH---------------------------HHHHHHHHHHHCCCCCEEEECC
Q ss_conf             368999999998559985--28999971410---------------------------1588888785077762376336
Q gi|254780368|r   39 DEIALEESLQLREKGIAT--EVIVVSIGSCK---------------------------VEEVLKNSLAMGADRGILIESN   89 (249)
Q Consensus        39 D~~AlE~Al~lke~~~g~--~V~~lsvG~~~---------------------------~~~~Lr~alAmGaD~ai~i~d~   89 (249)
                      -..|++-|++..-+.++.  .+.++..-+..                           +.+.|+.+.....+..+.+...
T Consensus        27 S~~Al~wAl~~~~~~~~~~~~l~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~  106 (175)
T 2gm3_A           27 CKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW  106 (175)
T ss_dssp             HHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999986699825999999446665333444544578889999999999999999999999999749826889


Q ss_pred             --CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCC
Q ss_conf             --5478899999999986126864999961135888----612899999985796
Q gi|254780368|r   90 --ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWP  138 (249)
Q Consensus        90 --~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p  138 (249)
                        .+ ++   +..|.+++++.++|||++|.+...+-    .|.+.-.+...-..|
T Consensus       107 ~~~G-~~---~~~I~~~a~~~~~dlIVmG~~g~~~~~~~~lGSvs~~v~~~a~cP  157 (175)
T 2gm3_A          107 IKTG-DP---KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP  157 (175)
T ss_dssp             EEES-CH---HHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSC
T ss_pred             EEEC-CH---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             8534-64---277899999728988996289998666662287999998177988


No 32 
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B}
Probab=66.45  E-value=6.4  Score=18.32  Aligned_cols=143  Identities=17%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE--ECC------------CH
Q ss_conf             986030388760598078881632487733260136899999---9998559985289999--714------------10
Q gi|254780368|r    5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS--IGS------------CK   67 (249)
Q Consensus         5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls--vG~------------~~   67 (249)
                      +.+++-||-+..+++..+-.+-+-=-+....+|-|++-+|.-   --+|+. +..+|+++.  ++.            +-
T Consensus        34 ~~~~~FpDGE~~vri~~~vrg~dV~iiqs~~~~~nd~lmeLll~~~a~r~~-gA~~itlViPYl~YsRQDr~~~~g~~~i  112 (319)
T 3dah_A           34 AMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRA-SAGRITAAIPYFGYARQDRRPRSARVAI  112 (319)
T ss_dssp             EEEEECTTSCEEEEECSCCBTCEEEEECCCCSSHHHHHHHHHHHHHHHHHT-TBSEEEEEESSCTTTTCCSCCTTCCCCC
T ss_pred             EEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHCCCCCCCCCCH
T ss_conf             488988999788877897679808999379968637899999999999874-9772588714662322032346774306


Q ss_pred             HHHHHHHHH-HHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCEEHHHHHHHHHC
Q ss_conf             158888878-50777623763365----4-----788999999999861268-649999611358886128999999857
Q gi|254780368|r   68 VEEVLKNSL-AMGADRGILIESNE----T-----LEPLSIAKILREIVKKEN-PIIVIAGKQTTDNESNQTGQMLAALMR  136 (249)
Q Consensus        68 ~~~~Lr~al-AmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~-~DLIl~G~~S~D~~~g~v~~~lA~~Lg  136 (249)
                      +...+-+.| ++|+|+.+.++-..    +     .+.+.....++.++.+.+ .+.++.   |.|.++-.-.-.+|..||
T Consensus       113 sa~~va~ll~~~g~d~vitvDlH~~~i~~~f~~pv~~l~~~~~~~~~~~~~~~~~~vvv---sPD~Ga~kra~~~A~~l~  189 (319)
T 3dah_A          113 SAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQNYPDLLVV---SPDVGGVVRARALAKQLN  189 (319)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCSCGGGGGGCSSCEEEECCHHHHHHHHHTTCCTTEEEE---CCSSTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHCCCCCEEE---CCCCCHHHHHHHHHHHCC
T ss_conf             79999844400588559995778487841669970333125788899997479873898---568856999999898649


Q ss_pred             CCCEEEEEEEEECCCE
Q ss_conf             9613324433432865
Q gi|254780368|r  137 WPQATFVSNIKIIDNH  152 (249)
Q Consensus       137 ~p~vt~v~~i~~~~~~  152 (249)
                      .|++. ..+-...++.
T Consensus       190 ~~~~~-~~K~R~~~~~  204 (319)
T 3dah_A          190 CDLAI-IDKRRPKANV  204 (319)
T ss_dssp             CEEEC-----------
T ss_pred             CCEEE-EEEEECCCCC
T ss_conf             98899-9999189993


No 33 
>2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB: 2wya_A*
Probab=66.41  E-value=5.5  Score=18.75  Aligned_cols=27  Identities=19%  Similarity=0.134  Sum_probs=10.4

Q ss_pred             CEEEEEECCCCCCCEEHHHHHHHHHCC
Q ss_conf             499996113588861289999998579
Q gi|254780368|r  111 IIVIAGKQTTDNESNQTGQMLAALMRW  137 (249)
Q Consensus       111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~  137 (249)
                      |+|++|..|.|..+-.+...+...||.
T Consensus        77 d~Li~aT~s~~d~~ps~a~~v~~~Lg~  103 (460)
T 2v4w_A           77 GRLEVGTETIIDKSKAVKTVLMELFQD  103 (460)
T ss_dssp             EEEEEECSCCSCSSSCHHHHHGGGTGG
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf             999999379887777779999998458


No 34 
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=65.29  E-value=6.7  Score=18.18  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             CHHH---HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCE-EEEEE
Q ss_conf             8899---9999999861268649999611358886128999999857961332443343286599998358967-99996
Q gi|254780368|r   93 EPLS---IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGT-MTMET  168 (249)
Q Consensus        93 D~~~---~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~-e~v~~  168 (249)
                      ||..   .+..+++-.+..++|+|++ -   +...=-.+..+|..||.|++-.-..-...+..+......+.|. .++++
T Consensus        34 ~P~~~~~l~~~la~~~~~~~~d~Vvg-i---e~~Gi~lA~~lA~~Lg~p~v~~rk~~~~~~~~~~~~~~~~~~~~~~iei  109 (186)
T 1l1q_A           34 TPAALDAVRKEVTAHYKDVPITKVVG-I---ESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEV  109 (186)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCCCEEEE-E---SGGGHHHHHHHHHHHTCEEEEEEETTSSCSSEEEEEEEETTEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEEEE-E---CCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEE
T ss_conf             99999999999999706699979998-4---5544477899999819987877613788850599998615776607998


Q ss_pred             CCCE------EEEEECCCCCC
Q ss_conf             3988------99984355654
Q gi|254780368|r  169 PLPA------VITVDLNLNEP  183 (249)
Q Consensus       169 ~lPa------visv~~~~n~P  183 (249)
                      +.++      |+-|+.=+.+-
T Consensus       110 ~~~~l~~G~rVLIVDDvl~TG  130 (186)
T 1l1q_A          110 QKRQLGPHDVVLLHDDVLATG  130 (186)
T ss_dssp             EGGGCCTTCCEEEEEEEESSS
T ss_pred             ECCCCCCCCEEEEEEEHHHHC
T ss_conf             712037899899995343316


No 35 
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=63.08  E-value=7.3  Score=17.92  Aligned_cols=67  Identities=10%  Similarity=0.056  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE--------------------------------HHHHHHHHHCC
Q ss_conf             5478899999999986126864999961135888612--------------------------------89999998579
Q gi|254780368|r   90 ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ--------------------------------TGQMLAALMRW  137 (249)
Q Consensus        90 ~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~--------------------------------v~~~lA~~Lg~  137 (249)
                      .-.||.-++++|++++...+.+=||.|.-|.|...|.                                |---+-..|||
T Consensus       251 ~R~dPv~VsRv~SAmVNs~DD~GVL~G~Wsg~y~~Gt~P~~W~GSv~IL~q~~~~~~pVkYGQCWVFAgV~~TvlRcLGI  330 (731)
T 1ex0_A          251 GRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFLRCLGI  330 (731)
T ss_dssp             GTTCHHHHHHHHHHHHBCSTTCSSEEECCSSCCTTSCCGGGCCBSHHHHHHHHHHTSCEEEECHHHHHHHHHHHHHHHTC
T ss_pred             HCCCCCEEHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             76994001223577635678884263676677778858544458399999998669962112035678777776622688


Q ss_pred             CC--EEEEEEEEECCCEEEEE
Q ss_conf             61--33244334328659999
Q gi|254780368|r  138 PQ--ATFVSNIKIIDNHAIVT  156 (249)
Q Consensus       138 p~--vt~v~~i~~~~~~~~v~  156 (249)
                      |+  ||+-.+-.=.++.+++.
T Consensus       331 P~R~VTNf~SAHDtd~nLtiD  351 (731)
T 1ex0_A          331 PARIVTNYFSAHDNDANLQMD  351 (731)
T ss_dssp             CEEEEEEEEECCSCTTBCEEE
T ss_pred             CCEEECCCCCCCCCCCCCCEE
T ss_conf             640133556445588873011


No 36 
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.26.2.4
Probab=61.80  E-value=7.7  Score=17.77  Aligned_cols=99  Identities=12%  Similarity=0.112  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH---------------------HHHHHHHHHHHCCCCCE-EEEC--CC
Q ss_conf             260136899999999855998528999971410---------------------15888887850777623-7633--65
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK---------------------VEEVLKNSLAMGADRGI-LIES--NE   90 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~---------------------~~~~Lr~alAmGaD~ai-~i~d--~~   90 (249)
                      .++....|++.|+++..+ .+..++++.+-+..                     .++.++.+.....+... .+..  ..
T Consensus        26 ~S~~s~~a~~~a~~lA~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~  104 (163)
T 1tq8_A           26 GSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV  104 (163)
T ss_dssp             SSHHHHHHHHHHHHHHTT-TSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             998999999999999854-8988999998224554444555551778999999999999999999997699719999982


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCC
Q ss_conf             478899999999986126864999961135888----612899999985796
Q gi|254780368|r   91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWP  138 (249)
Q Consensus        91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p  138 (249)
                      + ++   ...|...+++.++|||++|.+.-++-    -|.+.-.|......|
T Consensus       105 G-~~---~~~i~~~a~~~~~dliV~G~~~~~~l~~~~~Gs~~~~ll~~s~~P  152 (163)
T 1tq8_A          105 G-AP---VDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVD  152 (163)
T ss_dssp             S-SH---HHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCE
T ss_pred             C-CH---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf             7-83---888999987425446754479998665574287999999708998


No 37 
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=59.73  E-value=8.4  Score=17.54  Aligned_cols=132  Identities=17%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHH---HHHHCCCCCCEEEEEE-------------CCCHH
Q ss_conf             9860303887605980788816324877332601368999999---9985599852899997-------------14101
Q gi|254780368|r    5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESL---QLREKGIATEVIVVSI-------------GSCKV   68 (249)
Q Consensus         5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al---~lke~~~g~~V~~lsv-------------G~~~~   68 (249)
                      +.+++-||-+..+++..+-.+=+-=-+....+| +++-+|.-+   -+|+. +..+++++-=             |.+-+
T Consensus        27 ~~~~~F~dGE~~v~i~~~vrg~~v~iv~s~~~~-nd~l~ell~~~~alr~~-ga~~itlViPYl~YaRQDR~~~~ge~is  104 (284)
T 1u9y_A           27 VEYKRFPDNEIYVRIVDEINDDEAVIINTQKNQ-NDAIVETILLCDALRDE-GVKKITLVAPYLAYARQDKKFNPGEAIS  104 (284)
T ss_dssp             EEEEECTTCCEEEEECSCCCSSEEEEECCCSSH-HHHHHHHHHHHHHHHTT-TCCEEEEECSSCTTCSCSSCSSTTBCCH
T ss_pred             EEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             488988999789973677789869999279983-36599999999999871-8873899952232010465458987358


Q ss_pred             HHHHHHHHHHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCC
Q ss_conf             5888887850777623763365----4-----788999999999861268649999611358886128999999857961
Q gi|254780368|r   69 EEVLKNSLAMGADRGILIESNE----T-----LEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQ  139 (249)
Q Consensus        69 ~~~Lr~alAmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~  139 (249)
                      ...+-+.+++|+|+.+.+.-..    +     .+-......++.++++...+.++.   |.|.+...-.-.+|..||.|+
T Consensus       105 ak~~a~ll~~g~d~vvt~D~H~~~~~~~f~~~~~~l~~~~~l~~~~~~~~~~~vvv---sPD~g~~kra~~~a~~l~~~~  181 (284)
T 1u9y_A          105 IRALAKIYSNIVDKLITINPHETHIKDFFTIPFIYGDAVPKLAEYVKDKLNDPIVL---APDKGALEFAKTASKILNAEY  181 (284)
T ss_dssp             HHHHHHHHHHHCSEEEEESCSCGGGGGGCSSCEEEECCHHHHHHHHTTTCSSCEEE---ESSGGGHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHHHCCCCE
T ss_conf             99999998745684489837817875113687124423589999998653686898---479865789999998576632


Q ss_pred             EE
Q ss_conf             33
Q gi|254780368|r  140 AT  141 (249)
Q Consensus       140 vt  141 (249)
                      .-
T Consensus       182 ~~  183 (284)
T 1u9y_A          182 DY  183 (284)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             34


No 38 
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=58.92  E-value=8.7  Score=17.46  Aligned_cols=28  Identities=14%  Similarity=0.270  Sum_probs=14.0

Q ss_pred             CCEEEEEEECCCCEEEEEE----CCCEEEEEE
Q ss_conf             8659999835896799996----398899984
Q gi|254780368|r  150 DNHAIVTREVGHGTMTMET----PLPAVITVD  177 (249)
Q Consensus       150 ~~~~~v~r~~e~g~e~v~~----~lPavisv~  177 (249)
                      +..+.+++-++|-.-++.+    .+|.+.-..
T Consensus       174 ~~~~lvEefi~G~E~~v~v~~~~~~~~~~i~~  205 (306)
T 1iow_A          174 DEEVLIEKWLSGPEFTVAILGEEILPSIRIQP  205 (306)
T ss_dssp             CSEEEEEECCCCCEEEEEEETTEECCCEEEEC
T ss_pred             CHHHHHHHCCCCCEEEEEEECCCCCCEEEEEE
T ss_conf             83566764567977999985576787699963


No 39 
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=57.37  E-value=9.2  Score=17.29  Aligned_cols=66  Identities=18%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             260136899999999855998528999971410158888878507776237633654788999999999861
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK  106 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~  106 (249)
                      ++-.+.+.+|.+-+|+.......|.++|.-  ...+.+.+|+..||+ +|+..   +.++...-.+|..+++
T Consensus        69 l~mp~~~G~el~~~ir~~~~~~~vivlS~~--~~~~~~~~a~~~Ga~-~yl~K---p~~~~~L~~aI~~~~~  134 (152)
T 3eul_A           69 YRMPGMDGAQVAAAVRSYELPTRVLLISAH--DEPAIVYQALQQGAA-GFLLK---DSTRTEIVKAVLDCAK  134 (152)
T ss_dssp             TTCSSSCHHHHHHHHHHTTCSCEEEEEESC--CCHHHHHHHHHTTCS-EEEET---TCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHHHHCCCC-EEEEC---CCCHHHHHHHHHHHHC
T ss_conf             899998999999999975899859999686--999999999986998-99979---9999999999999987


No 40 
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=57.30  E-value=5.9  Score=18.55  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCE
Q ss_conf             99998612686499996113588861289999998579613
Q gi|254780368|r  100 ILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQA  140 (249)
Q Consensus       100 ~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~v  140 (249)
                      -++..+++..||+|+.   -.|.++..-+++.|..+++|.+
T Consensus        86 ~~~~~~~~~kpD~vlv---~GDr~e~la~a~aa~~~~ipi~  123 (375)
T 3beo_A           86 GLDKVMKEAKPDIVLV---HGDTTTTFIASLAAFYNQIPVG  123 (375)
T ss_dssp             HHHHHHHHHCCSEEEE---ETTSHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHCCCCEEEE---ECCCCHHHHHHHHHHHCCCCEE
T ss_conf             9999997479988999---4687247779999998198389


No 41 
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Probab=56.65  E-value=9.5  Score=17.21  Aligned_cols=10  Identities=30%  Similarity=0.504  Sum_probs=5.3

Q ss_pred             CCEEEEEECC
Q ss_conf             6499996113
Q gi|254780368|r  110 PIIVIAGKQT  119 (249)
Q Consensus       110 ~DLIl~G~~S  119 (249)
                      .-||+++.-.
T Consensus       132 ~aLVV~sd~~  141 (396)
T 1xpm_A          132 KVLVIATDTA  141 (396)
T ss_dssp             EEEEEEEEEE
T ss_pred             CEEEEEEEEE
T ss_conf             5057665521


No 42 
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=55.16  E-value=10  Score=17.06  Aligned_cols=95  Identities=27%  Similarity=0.343  Sum_probs=65.8

Q ss_pred             HHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECC------------------CC-------CCHHHHH
Q ss_conf             99985599852899997--1-4101588888785077762376336------------------54-------7889999
Q gi|254780368|r   47 LQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESN------------------ET-------LEPLSIA   98 (249)
Q Consensus        47 l~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~------------------~~-------~D~~~~A   98 (249)
                      ..|+|+ .|.+|+++++  | +.+.+..-++|+..||.+.+.+.-+                  ++       ..-..+|
T Consensus        18 ~wL~e~-~~~eVi~~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~i~ana~Ye~~Y~l~tslaRplia   96 (400)
T 1kor_A           18 KWLKET-YRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIA   96 (400)
T ss_dssp             HHHHHH-HTCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHH
T ss_pred             HHHHHC-CCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             999740-5988999997088667669999999984998899975799999999999997386557876234541064799


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE
Q ss_conf             9999986126864999961135888612899999985796133244
Q gi|254780368|r   99 KILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS  144 (249)
Q Consensus        99 ~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~  144 (249)
                      +.+..++++.+.+.|--|  |+-.++-||-.-++-..=-|.+..+.
T Consensus        97 ~~~v~~A~~~ga~~iaHG--~TGkGNDQvRFe~~~~al~P~l~iia  140 (400)
T 1kor_A           97 KHLVRIAEEEGAEAIAHG--ATGKGNDQVRFELTAYALKPDIKVIA  140 (400)
T ss_dssp             HHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTCEEEC
T ss_pred             HHHHHHHHHCCCEEEECC--CCCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf             999999854497699437--77578723668889997599974850


No 43 
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=53.36  E-value=11  Score=16.87  Aligned_cols=66  Identities=5%  Similarity=-0.069  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH--HHHHCCCCEEEEEE-EEECCCEEEEEEECCCCEEEE
Q ss_conf             999999998612686499996113588861289999--99857961332443-343286599998358967999
Q gi|254780368|r   96 SIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML--AALMRWPQATFVSN-IKIIDNHAIVTREVGHGTMTM  166 (249)
Q Consensus        96 ~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l--A~~Lg~p~vt~v~~-i~~~~~~~~v~r~~e~g~e~v  166 (249)
                      ..|.-|+..+++.|++..+-     |.+...+|-.+  |+++|+|++.-++. =+++++++++++...+-.++.
T Consensus       358 e~a~~I~~~L~~~girV~~D-----dr~~~~iG~Kir~a~~~g~Py~~IiIG~kEle~~~VtVR~Rd~~~q~~~  426 (471)
T 3a32_A          358 DLASSIAKGLLDKGFRVAVK-----GSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRR  426 (471)
T ss_dssp             HHHHHHHHHHHHTTCEEEEE-----EEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEE-----CCCCCCCCHHHHHHHHCCCCEEEEEECHHHHHCCEEEEEECCCCCCCCE
T ss_conf             99999999999789989998-----8999864689999985799809999834677479899997888542515


No 44 
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=52.41  E-value=11  Score=16.78  Aligned_cols=92  Identities=27%  Similarity=0.325  Sum_probs=63.6

Q ss_pred             HHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECC------------------CC-------CCHHHHH
Q ss_conf             99985599852899997--1-4101588888785077762376336------------------54-------7889999
Q gi|254780368|r   47 LQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESN------------------ET-------LEPLSIA   98 (249)
Q Consensus        47 l~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~------------------~~-------~D~~~~A   98 (249)
                      ..|+|+  |.+|+++++  | +.+.+..-++|+..||.+.+.+.-+                  ++       ..-..+|
T Consensus        23 ~wL~e~--g~eVia~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~i~ana~yeg~Y~l~tslaRplia  100 (413)
T 2nz2_A           23 VWLKEQ--GYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIA  100 (413)
T ss_dssp             HHHHHT--TEEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHH
T ss_pred             HHHHHC--CCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             999974--986999999699878889999999983998899971799999999999997364558873124552187999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEE
Q ss_conf             99999861268649999611358886128999999857961332
Q gi|254780368|r   99 KILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATF  142 (249)
Q Consensus        99 ~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~  142 (249)
                      +.+..++++.+.+.|.-|  ++-.++-||-.-++-..=-|.+..
T Consensus       101 ~~~v~~A~~~ga~~vaHG--~TGkGNDQvRFe~~~~aL~P~~~v  142 (413)
T 2nz2_A          101 RKQVEIAQREGAKYVSHG--ATGKGNDQVRFELSCYSLAPQIKV  142 (413)
T ss_dssp             HHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTCEE
T ss_pred             HHHHHHHHHCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             999999998399798358--776863688899999986999702


No 45 
>1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A*
Probab=51.19  E-value=12  Score=16.66  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             EECCCHHHHHHHHHHHHHHCC----CCCCEEEEEECC---CHHHH----HHHHHHHHCCCCCEEEECC-CCCCHHHHHHH
Q ss_conf             332601368999999998559----985289999714---10158----8888785077762376336-54788999999
Q gi|254780368|r   33 ISMNPFDEIALEESLQLREKG----IATEVIVVSIGS---CKVEE----VLKNSLAMGADRGILIESN-ETLEPLSIAKI  100 (249)
Q Consensus        33 ~~in~~D~~AlE~Al~lke~~----~g~~V~~lsvG~---~~~~~----~Lr~alAmGaD~ai~i~d~-~~~D~~~~A~~  100 (249)
                      +.+.++||.+++.|+.-..+.    .-.++..|-++.   .....    .+-.  .+|....+..-|- ...-.+..|-.
T Consensus        61 r~v~~~~Ed~~tma~~Aa~~~L~~~~~~~Id~li~~T~t~~~~~ps~a~~v~~--~Lgl~~~~~~~Di~~aC~G~~~AL~  138 (402)
T 1ysl_A           61 MAVNPISQDIVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHR--LMGIQPFARSFEIKEAAYGATAGLQ  138 (402)
T ss_dssp             EEECCTTCCHHHHHHHHHHTTCCHHHHHHEEEEEEECSSCSBSSSCHHHHHHH--HTTCCSSCEEEEEESGGGHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCHHHHHHH--HCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             99689999999999999999998589666899999947899778608899998--6298998459883141248999999


Q ss_pred             HHHH-HHC--CCCCEEEEEECCC
Q ss_conf             9998-612--6864999961135
Q gi|254780368|r  101 LREI-VKK--ENPIIVIAGKQTT  120 (249)
Q Consensus       101 La~~-i~~--~~~DLIl~G~~S~  120 (249)
                      +|.. ++.  ...-||+|+..++
T Consensus       139 ~A~~~i~sg~~~~aLVV~sD~~s  161 (402)
T 1ysl_A          139 LAKNHVALHPDKKVLVVAADIAK  161 (402)
T ss_dssp             HHHHHHHHSTTCEEEEEEEEEEC
T ss_pred             HHHHHHHCCCCCEEEEEECCCCC
T ss_conf             99999865888658997401211


No 46 
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=50.80  E-value=12  Score=16.62  Aligned_cols=99  Identities=12%  Similarity=0.149  Sum_probs=57.8

Q ss_pred             CCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEE-CCCEEEEEEECCC--CEEE
Q ss_conf             788---999999999861268649999611358886128999999857961332443343-2865999983589--6799
Q gi|254780368|r   92 LEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKI-IDNHAIVTREVGH--GTMT  165 (249)
Q Consensus        92 ~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~-~~~~~~v~r~~e~--g~e~  165 (249)
                      .||   ...++.||..++..++|+|++    .+...--.+..+|..||.|++-.-.+-.. .+..+........  ..+.
T Consensus       110 ~dP~~l~~lG~~lA~~~~~~~iD~Vvg----v~~~GiplA~~vA~~LgvP~v~~rk~~k~~~~~~i~~~~~s~~~~~~~~  185 (291)
T 1o57_A          110 GKPSVLSKVGKLFASVFAEREIDVVMT----VATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQT  185 (291)
T ss_dssp             TCHHHHHHHHHHHHHHTTTSCCSEEEE----ETTTTHHHHHHHHHHHTCCEEEEBCC-----CCEEEEEEECSSCCSEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEEEE----CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEE
T ss_conf             699999999999999737789979993----1756699999999996999799996047789856999887144764225


Q ss_pred             EEECCC------EEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             996398------8999843556545469888998852
Q gi|254780368|r  166 METPLP------AVITVDLNLNEPRYISLPNIIKARK  196 (249)
Q Consensus       166 v~~~lP------avisv~~~~n~PR~psl~~im~A~k  196 (249)
                      +.+...      -|+-|+.-+..-  -|+++++..-+
T Consensus       186 ~~~~~~~l~~g~rVLIVDDvi~tG--~T~~~~i~llr  220 (291)
T 1o57_A          186 MSLAKRSMKTGSNVLIIDDFMKAG--GTINGMINLLD  220 (291)
T ss_dssp             EEEEGGGSCTTCEEEEEEEEESSS--HHHHHHHHHTG
T ss_pred             EEECCCCCCCCCEEEEEHHHHHCC--HHHHHHHHHHH
T ss_conf             651123357885699842423327--78999999999


No 47 
>3fk5_A 3-oxoacyl-synthase III; bacterial blight, XOO4209, FABH, xanthomonas oryzae PV. oryzae KACC10331, cytoplasm, multifunctional enzyme; 2.05A {Xanthomonas oryzae PV}
Probab=49.89  E-value=12  Score=16.53  Aligned_cols=78  Identities=9%  Similarity=0.034  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHCC--CCCCEEEEEECCC---HHHH--HHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHH-HHCCCC-
Q ss_conf             8999999998559--9852899997141---0158--888878507776-2376336547889999999998-612686-
Q gi|254780368|r   41 IALEESLQLREKG--IATEVIVVSIGSC---KVEE--VLKNSLAMGADR-GILIESNETLEPLSIAKILREI-VKKENP-  110 (249)
Q Consensus        41 ~AlE~Al~lke~~--~g~~V~~lsvG~~---~~~~--~Lr~alAmGaD~-ai~i~d~~~~D~~~~A~~La~~-i~~~~~-  110 (249)
                      -|+++|.++-++.  .-.+|..|-.+..   ....  +-+-+-.+|..+ +....-..+.-.+..|-.+|.. ++.... 
T Consensus        64 mA~~Aa~~aL~~ag~~~~dId~lI~~s~t~~~~~P~~a~~v~~~LGl~~~~~~~dv~~~C~g~~~aL~~A~~~l~~g~~~  143 (338)
T 3fk5_A           64 AATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEID  143 (338)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEEEECCSSCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999849898999999998214897587499999998189986689861301579999999999887529963


Q ss_pred             -CEEEEEEC
Q ss_conf             -49999611
Q gi|254780368|r  111 -IIVIAGKQ  118 (249)
Q Consensus       111 -DLIl~G~~  118 (249)
                       -||+++..
T Consensus       144 ~~Lvv~~e~  152 (338)
T 3fk5_A          144 YALVVDGET  152 (338)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEECCHH
T ss_conf             699961412


No 48 
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=48.44  E-value=13  Score=16.38  Aligned_cols=113  Identities=15%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             EEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE--CC---CHHHHHHHHHHHHCCC
Q ss_conf             603038876059807888163248773326013689999999985599852899997--14---1015888887850777
Q gi|254780368|r    7 IKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSI--GS---CKVEEVLKNSLAMGAD   81 (249)
Q Consensus         7 vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsv--G~---~~~~~~Lr~alAmGaD   81 (249)
                      +|.+|--. ++-+--+|| ||++           +   ....|+|+  |.+|+++++  |.   ++.+..-++|+..||.
T Consensus         4 ~~~~~~gk-KVvLAySGG-LDTS-----------v---~l~wL~e~--g~eVia~~~DvGQ~~~ed~e~i~~kA~~~GA~   65 (455)
T 1k92_A            4 LKHLPVGQ-RIGIAFSGG-LDTS-----------A---ALLWMRQK--GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAE   65 (455)
T ss_dssp             ECSCCTTS-EEEEECCSS-HHHH-----------H---HHHHHHHT--TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCS
T ss_pred             HHHCCCCC-EEEEEECCC-CHHH-----------H---HHHHHHHC--CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             33199898-899994898-2899-----------9---99999974--98699999979998504179999999971997


Q ss_pred             CCEEEECCC------------C-----------CCH-----HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHH
Q ss_conf             623763365------------4-----------788-----999999999861268649999611358886128999999
Q gi|254780368|r   82 RGILIESNE------------T-----------LEP-----LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAA  133 (249)
Q Consensus        82 ~ai~i~d~~------------~-----------~D~-----~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~  133 (249)
                      +.+.+.-++            +           .-.     ..+|+.+.+++++.+.+.|--|  |+-.++-||=.-++.
T Consensus        66 ~~~viD~r~eF~~~~i~~i~a~a~y~~~~~~~Y~l~tslaRplia~~~v~~A~~~ga~aiaHG--~TGkGNDQvRFe~~~  143 (455)
T 1k92_A           66 NARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG--STYKGNDIERFYRYG  143 (455)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECC--CCTTSSHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC--CCCCCCCHHHHHHHH
T ss_conf             899971899999998999985535541035665476520898899999999998299299547--666765056577789


Q ss_pred             HHCCCC
Q ss_conf             857961
Q gi|254780368|r  134 LMRWPQ  139 (249)
Q Consensus       134 ~Lg~p~  139 (249)
                      ..--|.
T Consensus       144 ~al~P~  149 (455)
T 1k92_A          144 LLTNAE  149 (455)
T ss_dssp             HHHCTT
T ss_pred             HHCCCC
T ss_conf             740998


No 49 
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infectious diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=48.42  E-value=13  Score=16.38  Aligned_cols=33  Identities=18%  Similarity=0.346  Sum_probs=14.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCE
Q ss_conf             88999999999861268649999--6113588861
Q gi|254780368|r   93 EPLSIAKILREIVKKENPIIVIA--GKQTTDNESN  125 (249)
Q Consensus        93 D~~~~A~~La~~i~~~~~DLIl~--G~~S~D~~~g  125 (249)
                      .|+.+...|.+++.+.--.+|+.  |.-+.|++.|
T Consensus       113 tT~G~GelI~~Al~~G~~~iiiglGGSaT~DgG~G  147 (383)
T 3cwc_A          113 TSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAG  147 (383)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEECCSBCCCSTTHH
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf             57549999999997698679994278544147778


No 50 
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=47.80  E-value=13  Score=16.32  Aligned_cols=66  Identities=12%  Similarity=0.236  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             260136899999999855998528999971410158888878507776237633654788999999999861
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK  106 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~  106 (249)
                      +|-.+.+.+|..-+|++......|.++|.-  .......+|+..||+. |+...   .++-....+|..+++
T Consensus        59 i~mP~~~G~e~~~~ir~~~~~~~iivlt~~--~~~~~~~~al~~Ga~~-yl~Kp---~~~~~L~~ai~~v~~  124 (153)
T 3cz5_A           59 LTLPGPGGIEATRHIRQWDGAARILIFTMH--QGSAFALKAFEAGASG-YVTKS---SDPAELVQAIEAILA  124 (153)
T ss_dssp             SCCSSSCHHHHHHHHHHHCTTCCEEEEESC--CSHHHHHHHHHTTCSE-EEETT---SCTTHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEEEE--CCHHHHHHHHHCCCCE-EEECC---CCHHHHHHHHHHHHC
T ss_conf             457998789999999985899968999814--8999999999869983-89689---999999999999984


No 51 
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=47.70  E-value=13  Score=16.31  Aligned_cols=57  Identities=19%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             CEEEEEEEEECCCEEEEEE-ECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             1332443343286599998-35896799996398899984355654546988899885
Q gi|254780368|r  139 QATFVSNIKIIDNHAIVTR-EVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKAR  195 (249)
Q Consensus       139 ~vt~v~~i~~~~~~~~v~r-~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~  195 (249)
                      +-|.|.+++-+++...++. ...++.+..+-..-+|+.++...+.|+.|+++++-.-+
T Consensus       134 ~nt~V~~v~~~~~~w~V~~~~~~~~~~~~~~~fd~VvvatG~~~~P~~P~ipg~~~f~  191 (447)
T 2gv8_A          134 LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYA  191 (447)
T ss_dssp             CSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHH
T ss_pred             CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCCCCCHHHHC
T ss_conf             3469999981489258999960003424799884333588773876778888744530


No 52 
>3jpw_A Glutamate [NMDA] receptor subunit epsilon-2; amino terminal domain, zinc, phenylethanolamine, calcium, cell junction, cell membrane; HET: NAG; 2.80A {Rattus norvegicus} PDB: 3jpy_A*
Probab=47.68  E-value=13  Score=16.31  Aligned_cols=17  Identities=12%  Similarity=0.089  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHCCCCC
Q ss_conf             99999999986126864
Q gi|254780368|r   95 LSIAKILREIVKKENPI  111 (249)
Q Consensus        95 ~~~A~~La~~i~~~~~D  111 (249)
                      ..-++++++.++..+..
T Consensus       120 ~~q~~a~~~ll~~~~W~  136 (363)
T 3jpw_A          120 EQQASVMLNIMEEYDWY  136 (363)
T ss_dssp             HHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHCCCC
T ss_conf             99999999999866772


No 53 
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=47.66  E-value=13  Score=16.31  Aligned_cols=84  Identities=14%  Similarity=0.077  Sum_probs=44.3

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHHH---HHHHHHHCCCCCEEEEEECCCCCCCEEH
Q ss_conf             99852899997141015888887850777623763--365478899999---9999861268649999611358886128
Q gi|254780368|r   53 GIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIE--SNETLEPLSIAK---ILREIVKKENPIIVIAGKQTTDNESNQT  127 (249)
Q Consensus        53 ~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~--d~~~~D~~~~A~---~La~~i~~~~~DLIl~G~~S~D~~~g~v  127 (249)
                      ..+-++..+.-|. ..+.....---.|-..-..+.  .+...-+..+++   .+...+++..||+|++   ..|.++..-
T Consensus        31 ~~~~~~~li~tG~-H~~~~~~~~~~~gi~~d~~~~~~~~~~~~~~~~~~~~~~~~~il~~~kpD~Vlv---~GDr~~~la  106 (376)
T 1v4v_A           31 IPGLKPLVLLTGQ-HREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLV---HGDTLTTFA  106 (376)
T ss_dssp             STTEEEEEEECSS-CHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEE---ESSCHHHHH
T ss_pred             CCCCCEEEEECCC-CHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE---ECCCCHHHH
T ss_conf             8999889998268-856674711340997665678888888899999999999999974059998999---689707999


Q ss_pred             HHHHHHHHCCCCE
Q ss_conf             9999998579613
Q gi|254780368|r  128 GQMLAALMRWPQA  140 (249)
Q Consensus       128 ~~~lA~~Lg~p~v  140 (249)
                      ++..|..+++|.+
T Consensus       107 ~a~aa~~~~ipi~  119 (376)
T 1v4v_A          107 VAWAAFLEGIPVG  119 (376)
T ss_dssp             HHHHHHHTTCCEE
T ss_pred             HHHHHHHCCCCEE
T ss_conf             9999986297479


No 54 
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=45.94  E-value=13  Score=16.29  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=18.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCEE
Q ss_conf             788999999999861268649999--61135888612
Q gi|254780368|r   92 LEPLSIAKILREIVKKENPIIVIA--GKQTTDNESNQ  126 (249)
Q Consensus        92 ~D~~~~A~~La~~i~~~~~DLIl~--G~~S~D~~~g~  126 (249)
                      +.|+.+-..|.+++++.--.+|++  |.-+.|++.|.
T Consensus       107 atT~G~GelI~~Al~~G~~~IiiglGGSAT~DgG~G~  143 (371)
T 1to6_A          107 IQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGI  143 (371)
T ss_dssp             CCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHH
T ss_pred             HCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf             4475189999999975998899806886454277899


No 55 
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae}
Probab=44.69  E-value=11  Score=16.89  Aligned_cols=85  Identities=14%  Similarity=0.164  Sum_probs=44.6

Q ss_pred             CCCCEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEEEECCCCCCCEEHHH
Q ss_conf             9852899997141-0158888878507776237633654788999999---99986126864999961135888612899
Q gi|254780368|r   54 IATEVIVVSIGSC-KVEEVLKNSLAMGADRGILIESNETLEPLSIAKI---LREIVKKENPIIVIAGKQTTDNESNQTGQ  129 (249)
Q Consensus        54 ~g~~V~~lsvG~~-~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~---La~~i~~~~~DLIl~G~~S~D~~~g~v~~  129 (249)
                      .+-++..+.-|.- +....+.+.+.+-.|--+.+......-...++.+   ++..+++..||+|+.   -.|.++..-++
T Consensus        52 ~~~~~~li~TGqH~d~~~~~~~~~~i~~d~~~~~~~~~~s~~~~~~~~i~~~~~~~~~~kpD~VlV---~GDr~e~la~a  128 (396)
T 3dzc_A           52 NRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLV---HGDTATTFAAS  128 (396)
T ss_dssp             TTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTSHHHHHHH
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHH
T ss_conf             998779999089988999999854988873221588999899999999999999999719999999---58886225489


Q ss_pred             HHHHHHCCCCEE
Q ss_conf             999985796133
Q gi|254780368|r  130 MLAALMRWPQAT  141 (249)
Q Consensus       130 ~lA~~Lg~p~vt  141 (249)
                      ..|..+++|.+-
T Consensus       129 ~aa~~~~ipi~H  140 (396)
T 3dzc_A          129 LAAYYQQIPVGH  140 (396)
T ss_dssp             HHHHTTTCCEEE
T ss_pred             HHHHHHCCCEEE
T ss_conf             999982997899


No 56 
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structural genomics, NPPSFA; 1.64A {Thermus thermophilus HB8}
Probab=43.73  E-value=15  Score=15.92  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=44.5

Q ss_pred             CEEEEEECCCH--------HHHHHHHHHH-HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE
Q ss_conf             28999971410--------1588888785-077762376336--547889999999998612686499996113588861
Q gi|254780368|r   57 EVIVVSIGSCK--------VEEVLKNSLA-MGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESN  125 (249)
Q Consensus        57 ~V~~lsvG~~~--------~~~~Lr~alA-mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g  125 (249)
                      ++-++|+|.+.        ....|.+.|. .|.    .+...  -.-|.-.+..+|..++.+.++|+|++-=..+-+..-
T Consensus         3 rv~Iitigde~~~G~~~D~ng~~l~~~L~~~G~----~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~~~~D   78 (164)
T 2is8_A            3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPF----EVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRD   78 (164)
T ss_dssp             EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSE----EEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred             EEEEEEECCCCCCCCEECCCHHHHHHHHHHCCC----EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             999999588750467136509999999996899----8989999798889999999999845498689967861389985


Q ss_pred             EHHHHHHHHHCCC
Q ss_conf             2899999985796
Q gi|254780368|r  126 QTGQMLAALMRWP  138 (249)
Q Consensus       126 ~v~~~lA~~Lg~p  138 (249)
                      .++..+++.++..
T Consensus        79 ~t~~ai~~~~~~~   91 (164)
T 2is8_A           79 RTPEATRELLDRE   91 (164)
T ss_dssp             CHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHCCC
T ss_conf             6588899985665


No 57 
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=43.70  E-value=15  Score=15.92  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             CCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEE---EECCCEEE--EEEECCCCE
Q ss_conf             788---9999999998612686499996113588861289999998579613324433---43286599--998358967
Q gi|254780368|r   92 LEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNI---KIIDNHAI--VTREVGHGT  163 (249)
Q Consensus        92 ~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i---~~~~~~~~--v~r~~e~g~  163 (249)
                      .||   ..+++.|++.++..++|.|++ -.   ...=-.+..+|..||.|++- +.+-   ....+.+.  ..+...++.
T Consensus        33 ~dP~~~~~i~~~la~~~~~~~~d~Ivg-~~---~~GiplA~~lA~~L~~p~v~-~Rk~~~~~~~~~~~~~~~~~~~~~~~  107 (197)
T 1y0b_A           33 IDPLLMQRIGDEFASRFAKDGITKIVT-IE---SSGIAPAVMTGLKLGVPVVF-ARKHKSLTLTDNLLTASVYSFTKQTE  107 (197)
T ss_dssp             ECHHHHHHHHHHHHHHTTTTTCCEEEE-ET---TTTHHHHHHHHHHHTCCEEE-EBSSCCSSCCSSEEEEEEEETTTTEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCEEEE-EC---CCHHHHHHHHHHHHCCCEEE-EEECCCCCCCCCEEEEEEEEECCCCE
T ss_conf             379999999999999835899989998-66---21099999999986998799-98507778988469998984045541


Q ss_pred             EEEEECC------CEEEEEECCCCCC
Q ss_conf             9999639------8899984355654
Q gi|254780368|r  164 MTMETPL------PAVITVDLNLNEP  183 (249)
Q Consensus       164 e~v~~~l------Pavisv~~~~n~P  183 (249)
                      .++.+..      --|+-|+.=+.+-
T Consensus       108 ~~~~~~~~~l~~g~rVlIVDDvitTG  133 (197)
T 1y0b_A          108 SQIAVSGTHLSDQDHVLIIDDFLANG  133 (197)
T ss_dssp             EEEEEEGGGCCTTCEEEEEEEEESSC
T ss_pred             EEEEEEHHHCCCCCEEEEEEHHHHCC
T ss_conf             14654045416997999972021328


No 58 
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=43.67  E-value=9.9  Score=17.09  Aligned_cols=13  Identities=0%  Similarity=-0.036  Sum_probs=7.6

Q ss_pred             CEEEEEEECCCCE
Q ss_conf             6599998358967
Q gi|254780368|r  151 NHAIVTREVGHGT  163 (249)
Q Consensus       151 ~~~~v~r~~e~g~  163 (249)
                      +.+.+++.+.+..
T Consensus       202 ~~vliEk~i~g~k  214 (1073)
T 1a9x_A          202 KELLIDESLIGWK  214 (1073)
T ss_dssp             SCEEEEECCTTSE
T ss_pred             CCEEEEEECCCCE
T ss_conf             8679998517855


No 59 
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=42.91  E-value=15  Score=15.84  Aligned_cols=90  Identities=23%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC-C-----------CC----------CHHHHHH
Q ss_conf             999999998559985289999714101588888785077762376336-5-----------47----------8899999
Q gi|254780368|r   42 ALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN-E-----------TL----------EPLSIAK   99 (249)
Q Consensus        42 AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~-~-----------~~----------D~~~~A~   99 (249)
                      +|+.|-.|.++  |-+|+++|-  +...+.+++   .|..- +-+.+. .           ..          .......
T Consensus        37 ~l~la~~L~~r--GH~V~v~t~--~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (416)
T 3iaa_A           37 TLTVVTELVRR--GHRVSYVTA--GGFAEPVRA---AGATV-VPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLR  108 (416)
T ss_dssp             HHHHHHHHHHT--TCEEEEEEC--GGGHHHHHH---TTCEE-EECCCSGGGCCHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCEEEEEEC--CHHHHHHHH---CCCEE-EECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999978--898999968--236778986---79879-97277656533011036543113468999999999999


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE
Q ss_conf             999986126864999961135888612899999985796133244
Q gi|254780368|r  100 ILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS  144 (249)
Q Consensus       100 ~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~  144 (249)
                      .+.+.++...||+|++.     ......+..+|+.+++|++....
T Consensus       109 ~l~~~i~~~~pDvv~~~-----~~~~~~~~~~a~~~~~p~v~~~~  148 (416)
T 3iaa_A          109 ATAEALDGDVPDLVLYD-----DFPFIAGQLLAARWRRPAVRLSA  148 (416)
T ss_dssp             HHHHHHTTSCCSEEEEE-----STTHHHHHHHHHHHTCCEEEEES
T ss_pred             HHHHHHHCCCCCEEEEC-----CCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             99999726898189982-----64302688999970898699814


No 60 
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=42.19  E-value=16  Score=15.77  Aligned_cols=74  Identities=16%  Similarity=0.025  Sum_probs=46.6

Q ss_pred             HCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEECCC------EEEEEECC
Q ss_conf             126864999961135888612899999985796133244334328659999835896799996398------89998435
Q gi|254780368|r  106 KKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLP------AVITVDLN  179 (249)
Q Consensus       106 ~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~~lP------avisv~~~  179 (249)
                      +..++|.|++ -   +...=-.+..+|..||.|++-.-..-.............+.+..++++.-.      -|+-|+.=
T Consensus        56 ~~~~~D~Vvg-~---e~~Gi~la~~lA~~L~~p~v~~RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~i~~G~rVlIVDDv  131 (187)
T 1g2q_A           56 PEVKIDYIVG-L---ESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDI  131 (187)
T ss_dssp             TTSCCCEEEE-E---TTTHHHHHHHHHHHHTCEEEEEEETTCSCSSEEEEEEECSSCEEEEEEETTSSCTTCEEEEEEEE
T ss_pred             CCCCCCEEEE-E---CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECC
T ss_conf             7679879998-3---45753558999998699848997368788640479875156541788861444678679998300


Q ss_pred             CCCC
Q ss_conf             5654
Q gi|254780368|r  180 LNEP  183 (249)
Q Consensus       180 ~n~P  183 (249)
                      +.+-
T Consensus       132 i~TG  135 (187)
T 1g2q_A          132 IATG  135 (187)
T ss_dssp             ESSC
T ss_pred             CCCC
T ss_conf             4037


No 61 
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=41.97  E-value=16  Score=15.75  Aligned_cols=12  Identities=0%  Similarity=-0.117  Sum_probs=6.3

Q ss_pred             CEEEEEEECCCC
Q ss_conf             659999835896
Q gi|254780368|r  151 NHAIVTREVGHG  162 (249)
Q Consensus       151 ~~~~v~r~~e~g  162 (249)
                      +.+.+++-+++.
T Consensus       194 ~~v~iE~~i~~~  205 (451)
T 2vpq_A          194 GGLYMEKFIENF  205 (451)
T ss_dssp             CCEEEEECCCSE
T ss_pred             CCEEEEEECCCC
T ss_conf             838999735997


No 62 
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=41.30  E-value=16  Score=15.68  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=48.8

Q ss_pred             EEEEECCCHHHHHHHHH----HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHH
Q ss_conf             99997141015888887----85077762376336547889999999998612686499996113588861289999998
Q gi|254780368|r   59 IVVSIGSCKVEEVLKNS----LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL  134 (249)
Q Consensus        59 ~~lsvG~~~~~~~Lr~a----lAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~  134 (249)
                      +++-||..+.....+++    -.+|..--+.|... --.|    ..+.++.+..+.+.++++.    |.++++|+.+|..
T Consensus         2 V~IimGS~SD~~v~~~a~~~L~~~gi~~e~~V~SA-HR~p----~~l~~~~~~~~~~viIa~A----G~aaaLpgvvA~~   72 (157)
T 2ywx_A            2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASA-HRTP----ELVEEIVKNSKADVFIAIA----GLAAHLPGVVASL   72 (157)
T ss_dssp             EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT-TTCH----HHHHHHHHHCCCSEEEEEE----ESSCCHHHHHHTT
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCH----HHHHHHHHHCCCCEEEEEC----CCCCCCHHHHHHC
T ss_conf             89998868449999999999998399658866643-0699----9999998634547799943----6521223358870


Q ss_pred             HCCCCEEEEEE
Q ss_conf             57961332443
Q gi|254780368|r  135 MRWPQATFVSN  145 (249)
Q Consensus       135 Lg~p~vt~v~~  145 (249)
                      -.+|.+..=.+
T Consensus        73 t~~PVIgVP~~   83 (157)
T 2ywx_A           73 TTKPVIAVPVD   83 (157)
T ss_dssp             CSSCEEEEEEC
T ss_pred             CCCCCEECCCC
T ss_conf             79975755667


No 63 
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=39.80  E-value=17  Score=15.54  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHH---HHHHHHCCCCCCEEEEEE--CCC----------------------HHHHHHHHHHHHCCCCCEEEE
Q ss_conf             26013689999---999985599852899997--141----------------------015888887850777623763
Q gi|254780368|r   35 MNPFDEIALEE---SLQLREKGIATEVIVVSI--GSC----------------------KVEEVLKNSLAMGADRGILIE   87 (249)
Q Consensus        35 in~~D~~AlE~---Al~lke~~~g~~V~~lsv--G~~----------------------~~~~~Lr~alAmGaD~ai~i~   87 (249)
                      --|-|+. +-.   -.++.++  |.+|+++++  |..                      +..+..+.+-.+|..+..++.
T Consensus        12 aHPDDe~-l~~GGtla~~~~~--G~~v~vv~~T~Ge~G~~~~~~~~~~~~~~~~~l~~~R~~E~~~a~~~lg~~~~~~L~   88 (303)
T 1q74_A           12 AHPDDES-LSNGATIAHYTSR--GAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGVSAPIYLG   88 (303)
T ss_dssp             SSTTHHH-HHHHHHHHHHHHT--TCEEEEEESCCCTTCCCSSSTTGGGSTTTTCCHHHHHHHHHHHHHHHTTCCCCEETT
T ss_pred             ECCCCHH-HHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf             3898068-8899999999976--993899997589765677720002443237889999999999999863565325637


Q ss_pred             CCC-------------------CCCHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             365-------------------478899999999986126864999961
Q gi|254780368|r   88 SNE-------------------TLEPLSIAKILREIVKKENPIIVIAGK  117 (249)
Q Consensus        88 d~~-------------------~~D~~~~A~~La~~i~~~~~DLIl~G~  117 (249)
                      ...                   ..+...+...|...|++..+|+|++-.
T Consensus        89 ~~d~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ir~~~Pdvv~t~~  137 (303)
T 1q74_A           89 GAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRELRPHVVVTYD  137 (303)
T ss_dssp             STTSSBCCCCC----CCSCBGGGSCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             8853233445677655420232069999999999999970898899828


No 64 
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*
Probab=37.69  E-value=19  Score=15.33  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=14.9

Q ss_pred             ECCCHHHH----HHHHHHHHHHCCC--CCCEEEEEECC
Q ss_conf             32601368----9999999985599--85289999714
Q gi|254780368|r   34 SMNPFDEI----ALEESLQLREKGI--ATEVIVVSIGS   65 (249)
Q Consensus        34 ~in~~D~~----AlE~Al~lke~~~--g~~V~~lsvG~   65 (249)
                      .+-+.+|.    |+++|.++-++.+  -.++..|-+|.
T Consensus        44 ~~~~~~Ed~~tmA~~Aa~~lL~~~~i~p~dId~liv~T   81 (450)
T 2f82_A           44 AFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVGS   81 (450)
T ss_dssp             ECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEEC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEE
T ss_conf             97989999999999999999997599989999999993


No 65 
>3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12}
Probab=36.80  E-value=19  Score=15.24  Aligned_cols=66  Identities=14%  Similarity=0.064  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             260136899999999855998528999971410158888878507776237633654788999999999861
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK  106 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~  106 (249)
                      ++-.|.+.+|..-+||+.+....|.++|...  .....++|+..||+. |+...   .++-....++.++.+
T Consensus        54 ~~mP~~~G~e~~~~lr~~~~~~~iivlS~~~--~~~~~~~a~~~Ga~~-yl~Kp---~~~~~L~~ai~~v~~  119 (134)
T 3f6c_A           54 VDIPGVNGIQVLETLRKRQYSGIIIIVSAKN--DHFYGKHCADAGANG-FVSKK---EGMNNIIAAIEAAKN  119 (134)
T ss_dssp             TTCSSSCHHHHHHHHHHTTCCSEEEEEECC-----CTHHHHHHTTCSE-EEEGG---GCTHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHCCCCE-EEECC---CCHHHHHHHHHHHHC
T ss_conf             9999998999999999529998389996789--999999999879989-99798---999999999999987


No 66 
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=36.24  E-value=20  Score=15.18  Aligned_cols=66  Identities=9%  Similarity=0.042  Sum_probs=33.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             260136899999999855998528999971410158888878507776237633654788999999999861
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK  106 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~  106 (249)
                      ++-.+-..+|..-++++......|+++|.-  ...+...+|+..||+. |+.   .+.++-.....+..+++
T Consensus        57 ~~mp~~~G~~l~~~~~~~~~~~pvI~lT~~--~~~~~~~~a~~~Ga~d-yl~---KP~~~~~L~~~i~~~l~  122 (143)
T 3jte_A           57 MKMPKLSGMDILREIKKITPHMAVIILTGH--GDLDNAILAMKEGAFE-YLR---KPVTAQDLSIAINNAIN  122 (143)
T ss_dssp             SCCSSSCHHHHHHHHHHHCTTCEEEEEECT--TCHHHHHHHHHTTCSE-EEE---SSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHHH
T ss_conf             777777889999999987899969999888--9999999999869989-982---89999999999999999


No 67 
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A
Probab=35.79  E-value=20  Score=15.14  Aligned_cols=30  Identities=3%  Similarity=-0.083  Sum_probs=16.5

Q ss_pred             CCCCHHHHHHHHHHHHHC-CCCCEEEEEECC
Q ss_conf             547889999999998612-686499996113
Q gi|254780368|r   90 ETLEPLSIAKILREIVKK-ENPIIVIAGKQT  119 (249)
Q Consensus        90 ~~~D~~~~A~~La~~i~~-~~~DLIl~G~~S  119 (249)
                      ....+...|-.+|...=+ ..+|.+|+|.-|
T Consensus       108 ~ACss~~~Al~~Aa~~I~sG~ad~vLa~~ss  138 (347)
T 3lma_A          108 GACSTSMESIAISSALIDGGFAKRALAATSS  138 (347)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTSCSEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             6555699999999999977999999999654


No 68 
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=35.47  E-value=19  Score=15.32  Aligned_cols=54  Identities=11%  Similarity=0.190  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC
Q ss_conf             478899999999986126864999961135888612---------------------------------89999998579
Q gi|254780368|r   91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW  137 (249)
Q Consensus        91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~  137 (249)
                      -.||.-++++|++++...+.+=||.|..|.|...|.                                 |---+-..|||
T Consensus       209 R~dPV~V~Rv~SAmvNs~DD~GVL~GnWsgdY~~Gt~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgV~~TVlRcLGI  288 (695)
T 1g0d_A          209 RSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQWSKAGVRPVKYGQCWVFAAVACTVLRCLGI  288 (695)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTTCSEEECCSSCCTTSCCGGGCSBSHHHHHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             59955763320454066899817835766777899685313586999999875589612146034467778889986388


Q ss_pred             CC--EEEEE
Q ss_conf             61--33244
Q gi|254780368|r  138 PQ--ATFVS  144 (249)
Q Consensus       138 p~--vt~v~  144 (249)
                      |+  ||+-.
T Consensus       289 P~RvVTNf~  297 (695)
T 1g0d_A          289 PTRPITNFA  297 (695)
T ss_dssp             CEEEEEEEE
T ss_pred             CCEEECCCC
T ss_conf             715641434


No 69 
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=34.99  E-value=20  Score=15.05  Aligned_cols=72  Identities=17%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             HHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHHHCCCCCEEEEEEC------CCCCCCEEHHHHHHHHHCCCCEEEE
Q ss_conf             8888785077762376336547889-99999999861268649999611------3588861289999998579613324
Q gi|254780368|r   71 VLKNSLAMGADRGILIESNETLEPL-SIAKILREIVKKENPIIVIAGKQ------TTDNESNQTGQMLAALMRWPQATFV  143 (249)
Q Consensus        71 ~Lr~alAmGaD~ai~i~d~~~~D~~-~~A~~La~~i~~~~~DLIl~G~~------S~D~~~g~v~~~lA~~Lg~p~vt~v  143 (249)
                      .+++++.-|.+ ++.|.  -|.|+. .||.+|+-.++...-=+||+|.|      |+|+-.....+..+.....+-+..+
T Consensus       160 ~i~~~~~~~~~-GvVVt--HGTDTM~yTA~aLsf~l~~~~kPVVlTGSqrp~d~~ssDa~~NL~~Av~~A~s~~~~v~vv  236 (438)
T 1zq1_A          160 EVAKALNSGDY-GVVVA--HGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMVV  236 (438)
T ss_dssp             HHHHHHHTTCS-EEEEE--CCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEEE
T ss_pred             HHHHHHCCCCC-EEEEE--CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99997436997-39995--7861799999999998628999999969677888878468999999999973747724788


Q ss_pred             EE
Q ss_conf             43
Q gi|254780368|r  144 SN  145 (249)
Q Consensus       144 ~~  145 (249)
                      ..
T Consensus       237 ~~  238 (438)
T 1zq1_A          237 MH  238 (438)
T ss_dssp             EE
T ss_pred             EC
T ss_conf             31


No 70 
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes}
Probab=34.16  E-value=21  Score=14.97  Aligned_cols=31  Identities=13%  Similarity=0.053  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             2601368999999998559985289999714
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGS   65 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~   65 (249)
                      .++....|++.|+.+.-+..+.+++++++-+
T Consensus        10 ~s~~s~~al~~a~~~~~~~~~~~l~l~~v~~   40 (138)
T 3idf_A           10 DTEACERAAQYILDMFGKDADCTLTLIHVKP   40 (138)
T ss_dssp             SSHHHHHHHHHHHHHHTTCTTEEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             9989999999999999855898899998216


No 71 
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=33.49  E-value=22  Score=14.90  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             HHHHCCCCCCEEEEEECCCH--------HHHHHHHHHH----HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf             99855998528999971410--------1588888785----077762376336--547889999999998612686499
Q gi|254780368|r   48 QLREKGIATEVIVVSIGSCK--------VEEVLKNSLA----MGADRGILIESN--ETLEPLSIAKILREIVKKENPIIV  113 (249)
Q Consensus        48 ~lke~~~g~~V~~lsvG~~~--------~~~~Lr~alA----mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLI  113 (249)
                      .+++...--+|-++|+|..-        ....|+..|.    .|.+    +.+.  -.=|...+...|.+++.+.++|+|
T Consensus         7 ~~~~~~~~i~v~IitvsD~~~~g~~~D~sGp~l~~~l~~~~~~G~~----v~~~~ivpDd~~~I~~~l~~~~~~~~~DlV   82 (189)
T 1jlj_A            7 ILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGT----ISAYKIVPDEIEEIKETLIDWCDEKELNLI   82 (189)
T ss_dssp             ------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCE----EEEEEEECSCHHHHHHHHHHHHHTSCCSEE
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCE----EEEEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf             0136897228999996868636886878889999999865028967----989999689789999999998752377689


Q ss_pred             EEEECCCCCCCEEHHHHHHHHHCCC
Q ss_conf             9961135888612899999985796
Q gi|254780368|r  114 IAGKQTTDNESNQTGQMLAALMRWP  138 (249)
Q Consensus       114 l~G~~S~D~~~g~v~~~lA~~Lg~p  138 (249)
                      ++--..+=+..-.+|-.+.+.++..
T Consensus        83 iTTGGtg~~~~D~T~ea~~~~~~~~  107 (189)
T 1jlj_A           83 LTTGGTGFAPRDVTPEATKEVIERE  107 (189)
T ss_dssp             EEESCCSSSTTCCHHHHHHHHCSEE
T ss_pred             EECCCCCCCCCCCCHHHHHHCCCEE
T ss_conf             9767556677885987864215534


No 72 
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=31.84  E-value=22  Score=14.84  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC
Q ss_conf             478899999999986126864999961135888612---------------------------------89999998579
Q gi|254780368|r   91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW  137 (249)
Q Consensus        91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~  137 (249)
                      -.||.-++++|++++...+.+=||.|.-|.|...|.                                 |---+-..|||
T Consensus       214 R~dPV~VsRviSAmvNs~DD~GVL~GnWsgdY~~Gt~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgV~~TVlRcLGI  293 (687)
T 2q3z_A          214 RSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGI  293 (687)
T ss_dssp             TTCHHHHHHHHHHTTTCTTTTSSEEECCSSCCTTSCCTTTCCBSHHHHHHHHHTTTCCEEEECHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEHHHHHHHHHCCCC
T ss_conf             59975874101476467777866863465676788685102585999999987489543421111101211011122688


Q ss_pred             CC--EEEEEE
Q ss_conf             61--332443
Q gi|254780368|r  138 PQ--ATFVSN  145 (249)
Q Consensus       138 p~--vt~v~~  145 (249)
                      |+  ||+-.+
T Consensus       294 P~RvVTNf~S  303 (687)
T 2q3z_A          294 PTRVVTNYNS  303 (687)
T ss_dssp             CEEEEEEEEE
T ss_pred             CCEEECCCCC
T ss_conf             5302335554


No 73 
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=31.44  E-value=23  Score=14.69  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH--HHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEE
Q ss_conf             89999999998612686499996113588861289999--9985796133244334328659999835896799996
Q gi|254780368|r   94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML--AALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMET  168 (249)
Q Consensus        94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l--A~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~  168 (249)
                      ....|.-|+.-+++.|++..+=     |. ..-.|-..  |..+|+|+.--|-.=+++++.++++....+-.+++.+
T Consensus       380 ~~~~A~~l~~~L~~~gi~V~~D-----dr-~~~~G~k~~~ad~iG~P~~IiVG~~ele~g~Vtvr~R~t~eq~~v~i  450 (458)
T 2i4l_A          380 TDAACDQLYRELSAKGVDVLYD-----DT-DQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLAL  450 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEE-----CS-SCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEET
T ss_pred             HHHHHHHHHHHHHHCCCEEEEE-----CC-CCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEH
T ss_conf             9999999999999789999998-----99-99988999999976999899991883668999999998995688669


No 74 
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, GMP reductase domain, structural genomics; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=31.12  E-value=24  Score=14.65  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=14.0

Q ss_pred             CCCEECCCHHHHH-HHHHHHHHHCC
Q ss_conf             8773326013689-99999998559
Q gi|254780368|r   30 NTKISMNPFDEIA-LEESLQLREKG   53 (249)
Q Consensus        30 ~~~~~in~~D~~A-lE~Al~lke~~   53 (249)
                      .+|.+..|.|-.+ -|.|..+.+.+
T Consensus        67 ~iPIi~ApMd~Vt~~~mAiA~a~~G   91 (393)
T 2qr6_A           67 DLPFMNHPSDALASPEFVIEMGKQG   91 (393)
T ss_dssp             SSSEEECCCTTTCCHHHHHHHHHTT
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHCC
T ss_conf             8847988876567899999999779


No 75 
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp}
Probab=30.85  E-value=24  Score=14.62  Aligned_cols=12  Identities=0%  Similarity=0.055  Sum_probs=6.5

Q ss_pred             CEEEEEEECCCC
Q ss_conf             659999835896
Q gi|254780368|r  151 NHAIVTREVGHG  162 (249)
Q Consensus       151 ~~~~v~r~~e~g  162 (249)
                      +.+.+++-+++.
T Consensus       199 ~~vlvEk~l~g~  210 (446)
T 3ouz_A          199 GTMYMEKYIQNP  210 (446)
T ss_dssp             CCEEEEECCSSC
T ss_pred             CCEEEEEECCCC
T ss_conf             878999825998


No 76 
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=30.74  E-value=24  Score=14.61  Aligned_cols=11  Identities=9%  Similarity=0.117  Sum_probs=6.3

Q ss_pred             CCHHHHHHHHH
Q ss_conf             79999999999
Q gi|254780368|r  233 YSTTKLIEILK  243 (249)
Q Consensus       233 e~~~eLv~~L~  243 (249)
                      +-++++++.|+
T Consensus       152 eiv~~Il~~L~  162 (168)
T 2pt5_A          152 EVVKEILLSLE  162 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 77 
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=30.64  E-value=24  Score=14.60  Aligned_cols=82  Identities=15%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             68999999998559985289999714101588888785077762376336547889999999998612686499996113
Q gi|254780368|r   40 EIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQT  119 (249)
Q Consensus        40 ~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S  119 (249)
                      .+++-.+--|.+. .|-+|+.+..-.......+|.....-.+++ ++.+    |.+.    +.+.+++.++||||.    
T Consensus       290 ~~~~~l~~fl~~E-lG~~vv~~gt~~~~~~~~~r~~~~~~~~e~-~~~~----D~~e----ie~~i~~~~pdliiG----  355 (525)
T 3aek_B          290 THVIAAARIAAKE-VGFEVVGMGCYNREMARPLRTAAAEYGLEA-LITD----DYLE----VEKAIEAAAPELILG----  355 (525)
T ss_dssp             HHHHHHHHHHHHT-TCCEEEEEEESCGGGHHHHHHHHHHTTCCC-EECS----CHHH----HHHHHHHHCCSEEEE----
T ss_pred             HHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHCCCEE-EECC----CHHH----HHHHHHHCCCCEEEE----
T ss_conf             6799999999996-698799934786115799997655329747-9659----9999----999986469999997----


Q ss_pred             CCCCCEEHHHHHHHHHCCCCE
Q ss_conf             588861289999998579613
Q gi|254780368|r  120 TDNESNQTGQMLAALMRWPQA  140 (249)
Q Consensus       120 ~D~~~g~v~~~lA~~Lg~p~v  140 (249)
                           ++.+-.+|..||+||+
T Consensus       356 -----ss~er~iA~klgiP~~  371 (525)
T 3aek_B          356 -----TQMERNIAKKLGLPCA  371 (525)
T ss_dssp             -----CHHHHHHHHHHTCCEE
T ss_pred             -----CCHHHHHHHHHCCCEE
T ss_conf             -----8178999998499989


No 78 
>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A
Probab=29.74  E-value=25  Score=14.50  Aligned_cols=133  Identities=17%  Similarity=0.144  Sum_probs=76.6

Q ss_pred             EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHH---HHHCCCCCCEEEEE--ECCCH-----------H
Q ss_conf             98603038876059807888163248773326013689999999---98559985289999--71410-----------1
Q gi|254780368|r    5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQ---LREKGIATEVIVVS--IGSCK-----------V   68 (249)
Q Consensus         5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~---lke~~~g~~V~~ls--vG~~~-----------~   68 (249)
                      +.+|+-||-+..+++..+-.+=+-=-+....+|.+++-+|.-+-   +|+. +..+|+++.  +|..+           +
T Consensus        30 ~~~~~F~dGE~~v~i~e~vrg~dV~iiqs~~~~~nd~lmelll~i~alr~~-~A~~It~ViPYl~YaRQDr~~~~ge~is  108 (326)
T 2h06_A           30 VVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIA-SASRVTAVIPCFPYARQDKKDKSRAPIS  108 (326)
T ss_dssp             EEEEECSSSCEEEEECSCCBTCEEEEECCCCSCHHHHHHHHHHHHHHHHTT-TBSEEEEEESSCTTTTCCSCSSSSCCCH
T ss_pred             EEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCCCEE
T ss_conf             288988999778887998789858999589999466899999988888756-8872899987313431331337988653


Q ss_pred             HHHHHHHH-HHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCEEHHHHHHHHH
Q ss_conf             58888878-50777623763365----4-----788999999999861268---64999961135888612899999985
Q gi|254780368|r   69 EEVLKNSL-AMGADRGILIESNE----T-----LEPLSIAKILREIVKKEN---PIIVIAGKQTTDNESNQTGQMLAALM  135 (249)
Q Consensus        69 ~~~Lr~al-AmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~---~DLIl~G~~S~D~~~g~v~~~lA~~L  135 (249)
                      ...+-+.| ++|+|+.+.++-..    +     .+.......+..++....   .++++.   |.|.++-.-.-.+|..|
T Consensus       109 ak~va~lL~~~G~d~vit~DlH~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv---sPD~Ga~kra~~~a~~l  185 (326)
T 2h06_A          109 AKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIV---SPDAGGAKRVTSIADRL  185 (326)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCSSGGGGGGCSSCEEEECSHHHHHHHHHTTCTTGGGCEEE---ESSGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE---CCCCCHHHHHHHHHHHH
T ss_conf             999999998708997999648879984215898653215403456788742576677698---67955799999999982


Q ss_pred             CCCCEE
Q ss_conf             796133
Q gi|254780368|r  136 RWPQAT  141 (249)
Q Consensus       136 g~p~vt  141 (249)
                      |.|+..
T Consensus       186 ~~~~~~  191 (326)
T 2h06_A          186 NVDFAL  191 (326)
T ss_dssp             TCEEEE
T ss_pred             CCCEEE
T ss_conf             897434


No 79 
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=29.53  E-value=25  Score=14.48  Aligned_cols=66  Identities=14%  Similarity=0.214  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             260136899999999855998528999971410158888878507776237633654788999999999861
Q gi|254780368|r   35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK  106 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~  106 (249)
                      +|-.+...+|..-+||+......|.++|.  ....+..++++..||+. |+..   ..++-..-.+|.++.+
T Consensus        57 i~mP~~~G~e~~~~ir~~~~~~~vI~lT~--~~~~~~~~~a~~~Ga~~-yl~K---p~~~~~L~~~I~~v~~  122 (133)
T 3b2n_A           57 IEMPGMTGLEVLAEIRKKHLNIKVIIVTT--FKRPGYFEKAVVNDVDA-YVLK---ERSIEELVETINKVNN  122 (133)
T ss_dssp             SSCSSSCHHHHHHHHHHTTCSCEEEEEES--CCCHHHHHHHHHTTCSE-EEET---TSCHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHCCCCE-EEEC---CCCHHHHHHHHHHHHH
T ss_conf             77899988999999998689996899967--89999999999879978-9979---9999999999999997


No 80 
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}
Probab=29.48  E-value=25  Score=14.47  Aligned_cols=42  Identities=2%  Similarity=0.009  Sum_probs=16.6

Q ss_pred             HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEEEECC
Q ss_conf             07776237633654788999999999861268---6499996113
Q gi|254780368|r   78 MGADRGILIESNETLEPLSIAKILREIVKKEN---PIIVIAGKQT  119 (249)
Q Consensus        78 mGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~---~DLIl~G~~S  119 (249)
                      +|...+.-..-..+.-.+..+-.+|...-..+   .-||+++...
T Consensus        98 lgl~~~~~~di~~~C~g~~~al~~A~~~~~~g~~~~~Lvv~~e~~  142 (331)
T 2x3e_A           98 LGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTF  142 (331)
T ss_dssp             TTCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECG
T ss_pred             HCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             557984101177567889999998751653488766999983144


No 81 
>2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413}
Probab=29.03  E-value=26  Score=14.43  Aligned_cols=45  Identities=18%  Similarity=0.030  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEE
Q ss_conf             89999999998612686499996113588861289999998579613324433
Q gi|254780368|r   94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNI  146 (249)
Q Consensus        94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i  146 (249)
                      -..|+..|.+++++.|++.-|.+       |||+|-+++.. |+|.=+.+.++
T Consensus       166 K~tTal~l~~~l~~~G~~a~fia-------TGQTGili~g~-Gv~iDav~~DF  210 (349)
T 2obn_A          166 KMSTSLELHWAAKLRGWRSKFLA-------TGQTGVMLEGD-GVALDAVRVDF  210 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEC-------CSHHHHHHHSC-SCCGGGSBHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEE-------CCCEEEEECCC-CEECCCHHHHH
T ss_conf             78999999999997799746997-------27605652267-40105306777


No 82 
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=28.95  E-value=26  Score=14.42  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC
Q ss_conf             478899999999986126864999961135888612---------------------------------89999998579
Q gi|254780368|r   91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW  137 (249)
Q Consensus        91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~  137 (249)
                      -.||.-++++|++++...+.+=||.|.-|.|...|.                                 |---+-..|||
T Consensus       209 R~dPv~V~Rv~SamvNs~dd~GVL~GnWsg~y~~G~~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgv~~TvlR~LGI  288 (692)
T 1vjj_A          209 RNDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWNGSVEILKNWKKSGLSPVRYGQCWVFAGTLNTALRSLGI  288 (692)
T ss_dssp             GGCHHHHHHHHHHHTBCTTTTCSEEECCSSCCTTSCCGGGCCBSHHHHHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEEEHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             59966873320444066888866852465776788785212585999999997399644300344667778888874478


Q ss_pred             CC--EEEEEEEEECCCEEEEE
Q ss_conf             61--33244334328659999
Q gi|254780368|r  138 PQ--ATFVSNIKIIDNHAIVT  156 (249)
Q Consensus       138 p~--vt~v~~i~~~~~~~~v~  156 (249)
                      |+  ||+-.+-.=.++.+++.
T Consensus       289 P~R~VTnf~SAHDtd~nLtiD  309 (692)
T 1vjj_A          289 PSRVITNFNSAHDTDRNLSVD  309 (692)
T ss_dssp             CEEEEEEEEEEECSSSSSEEE
T ss_pred             CEEEECCCCCCCCCCCCCEEE
T ss_conf             626752556734588871344


No 83 
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=28.71  E-value=26  Score=14.39  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf             36899999999855998528999971410158888878507776
Q gi|254780368|r   39 DEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADR   82 (249)
Q Consensus        39 D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~   82 (249)
                      +...++..-++++......|.++|.  ....+....++..|||.
T Consensus        58 ~~~g~~~~~~ir~~~~~~pii~ls~--~~~~~~~~~~l~~Gadd   99 (225)
T 1kgs_A           58 VHDGWEILKSMRESGVNTPVLMLTA--LSDVEYRVKGLNMGADD   99 (225)
T ss_dssp             SSCHHHHHHHHHHTTCCCCEEEEES--SCHHHHHHHTCCCCCSE
T ss_pred             CCCCCCHHHHHHCCCCCCCEEECCC--CCCHHHHHHHHHCCCCE
T ss_conf             5431010122111345675320233--44167899999779985


No 84 
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=28.39  E-value=26  Score=14.35  Aligned_cols=14  Identities=29%  Similarity=0.304  Sum_probs=5.7

Q ss_pred             ECCCHHHHH-HHHHH
Q ss_conf             714101588-88878
Q gi|254780368|r   63 IGSCKVEEV-LKNSL   76 (249)
Q Consensus        63 vG~~~~~~~-Lr~al   76 (249)
                      +|++.+..+ +=+.|
T Consensus        13 iG~~GsGKSTvak~L   27 (168)
T 1zuh_A           13 IGFMGSGKSSLAQEL   27 (168)
T ss_dssp             ESCTTSSHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHH
T ss_conf             899999899999999


No 85 
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=27.57  E-value=27  Score=14.26  Aligned_cols=13  Identities=15%  Similarity=0.059  Sum_probs=8.4

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9999999999861
Q gi|254780368|r  234 STTKLIEILKSKH  246 (249)
Q Consensus       234 ~~~eLv~~L~~e~  246 (249)
                      ..+++++.|++|.
T Consensus       627 ~ldeli~~l~~ei  639 (645)
T 1nyr_A          627 EKDEFIWNLVDEI  639 (645)
T ss_dssp             EHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHH
T ss_conf             2999999999999


No 86 
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=27.34  E-value=27  Score=14.24  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=46.7

Q ss_pred             CCCEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEEEECCCCCCCEEHHHH
Q ss_conf             852899997141-0158888878507776237633654788999999---999861268649999611358886128999
Q gi|254780368|r   55 ATEVIVVSIGSC-KVEEVLKNSLAMGADRGILIESNETLEPLSIAKI---LREIVKKENPIIVIAGKQTTDNESNQTGQM  130 (249)
Q Consensus        55 g~~V~~lsvG~~-~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~---La~~i~~~~~DLIl~G~~S~D~~~g~v~~~  130 (249)
                      .-++.++.-|.- +......+-+.+-.|-.+.+......-...++.+   ++..+++..||+|+.   -.|.++..-+.+
T Consensus        56 ~~~~~li~TGqH~d~~~~~~~~~~i~~d~~l~i~~~~~~~~~~~~~~i~~~~~~~~~~kPD~vlV---~GDr~~~la~al  132 (403)
T 3ot5_A           56 TFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLV---HGDTTTSFAAGL  132 (403)
T ss_dssp             TEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTCHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE---ECCCCHHHHHHH
T ss_conf             88879999079978999999861999883343488999999999999999999999739999999---688804899999


Q ss_pred             HHHHHCCCCEE
Q ss_conf             99985796133
Q gi|254780368|r  131 LAALMRWPQAT  141 (249)
Q Consensus       131 lA~~Lg~p~vt  141 (249)
                      .|.++++|.+-
T Consensus       133 aa~~~~Ipi~H  143 (403)
T 3ot5_A          133 ATFYQQKMLGH  143 (403)
T ss_dssp             HHHHTTCEEEE
T ss_pred             HHHHHCCCEEE
T ss_conf             99981997899


No 87 
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12}
Probab=25.98  E-value=29  Score=14.08  Aligned_cols=42  Identities=10%  Similarity=0.159  Sum_probs=28.4

Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             9999999855998528999971410158888878507776237633
Q gi|254780368|r   43 LEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIES   88 (249)
Q Consensus        43 lE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d   88 (249)
                      ++.|++..   .+..+.++++-+..+-+.+++|+..|.. ++.+++
T Consensus        27 ~~~a~~~~---p~~dlavI~VP~~~v~~~~~ea~~~Gv~-~vi~s~   68 (480)
T 3dmy_A           27 WDSACQKL---PDANLALISVAGEYAAELANQALDRNLN-VMMFSD   68 (480)
T ss_dssp             HHHHHHHS---TTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCC
T ss_pred             HHHHHHCC---CCCCEEEEEECHHHHHHHHHHHHHCCCC-EEEECC
T ss_conf             99997337---9999899970889999999999977996-999849


No 88 
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=25.96  E-value=29  Score=14.08  Aligned_cols=73  Identities=10%  Similarity=0.152  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEE
Q ss_conf             899999999855998528999971410158888878507776237633654788999999999861268-6499996
Q gi|254780368|r   41 IALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKEN-PIIVIAG  116 (249)
Q Consensus        41 ~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~-~DLIl~G  116 (249)
                      .....|.+|.++  |..|.+...-....++...+.-..|..+++.+..|- .|.-.+.+.+..+.++.+ .|+++.-
T Consensus        35 IG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~~g~iDilVnn  108 (266)
T 3o38_A           35 IGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDV-TSTEAVDALITQTVEKAGRLDVLVNN  108 (266)
T ss_dssp             HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCT-TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             999999999987--998999979889999999999851798489999158-99999999999999980998599989


No 89 
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=25.91  E-value=29  Score=14.07  Aligned_cols=64  Identities=16%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC
Q ss_conf             13689999999985599--85289999714101588888785077762376336547889999999998612
Q gi|254780368|r   38 FDEIALEESLQLREKGI--ATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKK  107 (249)
Q Consensus        38 ~D~~AlE~Al~lke~~~--g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~  107 (249)
                      .|..++|..-++|....  ...+.++|-  ....+...+++..|++. ++.   ...++......+...+++
T Consensus        57 p~~~G~~l~~~ir~~~~~~~~piI~ls~--~~~~~~~~~a~~~Ga~d-yl~---KP~~~~~L~~~i~~~l~r  122 (127)
T 2jba_A           57 PGGSGIQFIKHLRRESMTRDIPVVMLTA--RGEEEDRVRGLETGADD-CIT---KPFSPKELVARIKAVMRR  122 (127)
T ss_dssp             TTEEHHHHHHHHHTSTTTTTSCEEEEEE--TTHHHHHHTTCCCSCSE-EEE---ESCCHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEC--CCCHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHHHH
T ss_conf             9962899999998478779990999989--89999999999849858-771---999999999999999815


No 90 
>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A*
Probab=25.62  E-value=29  Score=14.04  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=47.3

Q ss_pred             HHHHHHH-HHHCCCCCC-EEEEEECCC-----HHHHHHHHHHH-HCCCCCEEEECCCCC-CHH----HHH-HHHHH-HHH
Q ss_conf             9999999-985599852-899997141-----01588888785-077762376336547-889----999-99999-861
Q gi|254780368|r   42 ALEESLQ-LREKGIATE-VIVVSIGSC-----KVEEVLKNSLA-MGADRGILIESNETL-EPL----SIA-KILRE-IVK  106 (249)
Q Consensus        42 AlE~Al~-lke~~~g~~-V~~lsvG~~-----~~~~~Lr~alA-mGaD~ai~i~d~~~~-D~~----~~A-~~La~-~i~  106 (249)
                      -|+++++ +.+....-+ +.++|=.+.     +.+...|++-. .| ...+.+...... .++    ..| ..|.. .+.
T Consensus       129 kL~~aI~e~~~~~~~p~~I~V~sTC~~~lIGDDi~av~~~~~~~~g-~pVi~v~t~GF~g~s~~~G~~~a~~al~~~~~~  207 (491)
T 1m1n_A          129 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELS-KTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLG  207 (491)
T ss_dssp             HHHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCHHHHHHHHHHHHT-CCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             9999999999847999889997787798853799999999888739-838999789867763048999999999998500


Q ss_pred             C---------CCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE
Q ss_conf             2---------686499996113588861289999998579613324
Q gi|254780368|r  107 K---------ENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV  143 (249)
Q Consensus       107 ~---------~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v  143 (249)
                      +         ..+++-+.|.....++...+-.++. .+|+..++..
T Consensus       208 ~~~~~~~~~~~~~~VNiiG~~~~~gd~~ei~~lL~-~~Gi~v~~~~  252 (491)
T 1m1n_A          208 KRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE-EMGLRCVAQW  252 (491)
T ss_dssp             TTTTCCCSCCCTTEEEEEEECCBTTTTHHHHHHHH-HTTCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHH-HCCCCEEEEC
T ss_conf             45766666777873000587787557999999999-7599759987


No 91 
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=25.44  E-value=30  Score=14.02  Aligned_cols=164  Identities=13%  Similarity=0.043  Sum_probs=84.3

Q ss_pred             CCCEECCCHHHHHHHHHHHHHHCCCCCCE-EEEEECC-------------------CHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf             87733260136899999999855998528-9999714-------------------101588888785077762376336
Q gi|254780368|r   30 NTKISMNPFDEIALEESLQLREKGIATEV-IVVSIGS-------------------CKVEEVLKNSLAMGADRGILIESN   89 (249)
Q Consensus        30 ~~~~~in~~D~~AlE~Al~lke~~~g~~V-~~lsvG~-------------------~~~~~~Lr~alAmGaD~ai~i~d~   89 (249)
                      .+.+.+.||..++-+.|...++++  -|| .-+-|=|                   .+....|+.+|+.-. .++=+...
T Consensus        56 pvT~Ai~P~~~~~~~~a~~ar~~G--~EvllhlPMep~~~~~~~~gp~~L~~~~~~~~i~~~l~~~l~~vP-~avGvnNh  132 (261)
T 2qv5_A           56 EVTLGFAASGNSLQRWMQDARREG--HEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKIT-NYTGVMNY  132 (261)
T ss_dssp             TSEEEEETTCSSHHHHHHHHHHHT--CCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCC-CCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECC
T ss_conf             737998789977799999999779--879997666766888788885545667889999999999998698-62998346


Q ss_pred             C----CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEE
Q ss_conf             5----478899999999986126864999961135888612899999985796133244334328659999835896799
Q gi|254780368|r   90 E----TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMT  165 (249)
Q Consensus        90 ~----~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~  165 (249)
                      -    ..|.-.- +.+-+.+++.|  |.|.-..++   ...+...+|..+|+|+...=..|+-+.+.-.+.|.+..-...
T Consensus       133 mGS~~t~~~~~m-~~v~~~l~~~g--L~fvDS~T~---~~Sva~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~  206 (261)
T 2qv5_A          133 LGGRFLAEQSAL-EPVMRDIGKRG--LLFLDDGSS---AQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERI  206 (261)
T ss_dssp             ECTTGGGCHHHH-HHHHHHHHHTT--CEEEECSCC---TTCCHHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHH
T ss_pred             CCCHHHCCHHHH-HHHHHHHHHCC--CEEEECCCC---CCCHHHHHHHHCCCCEEEECEECCCCCCHHHHHHHHHHHHHH
T ss_conf             552012698999-99999998779--889946998---774899999975998654024258999999999999999999


Q ss_pred             EEECCCEEEEEECCCCCCCCCCHHHHHHH----HHCCCCEECHHHH
Q ss_conf             99639889998435565454698889988----5216612049890
Q gi|254780368|r  166 METPLPAVITVDLNLNEPRYISLPNIIKA----RKKRIEKKKATDF  207 (249)
Q Consensus       166 v~~~lPavisv~~~~n~PR~psl~~im~A----~kk~i~~~~~~dl  207 (249)
                      -+-..-| |.+.    .||--++..+.+-    +.+.|+.+.+++|
T Consensus       207 A~~~G~a-I~Ig----hp~p~Tl~~L~~w~~~l~~~gi~lVpvS~L  247 (261)
T 2qv5_A          207 ARRNGQA-IGVA----SAFDESIAAISKWSREAGGRGIEIVGVSAL  247 (261)
T ss_dssp             HHHHSEE-EEEE----ECCHHHHHHHHHHHHHGGGGTEEECCHHHH
T ss_pred             HHHCCCE-EEEE----CCCHHHHHHHHHHHHHHHHCCEEEEEHHHH
T ss_conf             9875958-9997----899899999999716777688699988997


No 92 
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=25.03  E-value=30  Score=13.97  Aligned_cols=84  Identities=11%  Similarity=0.125  Sum_probs=40.7

Q ss_pred             HHHHHHHCCCCCCEEEEEECC-CHHHHHHHHHH-HHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             999998559985289999714-10158888878-5077762376336--5478899999999986126864999961135
Q gi|254780368|r   45 ESLQLREKGIATEVIVVSIGS-CKVEEVLKNSL-AMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTT  120 (249)
Q Consensus        45 ~Al~lke~~~g~~V~~lsvG~-~~~~~~Lr~al-AmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~  120 (249)
                      .+-.|++.  +..+..+-..| .++.++..-.. ++|....+.+.++  ...++......|.....+..-.++++|.+  
T Consensus        34 l~~~L~~~--~~~~d~v~sSp~~Ra~qTae~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~vlvVgH~--  109 (161)
T 1ujc_A           34 MANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHL--  109 (161)
T ss_dssp             HHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCCEECGGGSTTCCHHHHHHHHHHHHHHTCCEEEEEECT--
T ss_pred             HHHHHHHC--CCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC--
T ss_conf             99999856--99989898588578999999999983998321035423789999999999997410479769999569--


Q ss_pred             CCCCEEHHHHHHHHHC
Q ss_conf             8886128999999857
Q gi|254780368|r  121 DNESNQTGQMLAALMR  136 (249)
Q Consensus       121 D~~~g~v~~~lA~~Lg  136 (249)
                          ..++.++..+++
T Consensus       110 ----p~l~~l~~~l~~  121 (161)
T 1ujc_A          110 ----PLVGYLVAELCP  121 (161)
T ss_dssp             ----THHHHHHHHHST
T ss_pred             ----CHHHHHHHHHHC
T ss_conf             ----569999999828


No 93 
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.94  E-value=30  Score=13.96  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHCC--CCCEEEEEECCCCCCCEEHHHHHHHHHCCC
Q ss_conf             99999999986126--864999961135888612899999985796
Q gi|254780368|r   95 LSIAKILREIVKKE--NPIIVIAGKQTTDNESNQTGQMLAALMRWP  138 (249)
Q Consensus        95 ~~~A~~La~~i~~~--~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p  138 (249)
                      ..-|+.+++.+++.  .||.|+|   |.-..+-|+...++..++.+
T Consensus        38 ~~qa~~~~~~l~~~~~~~d~i~~---Sp~~Ra~qTa~~i~~~~~~~   80 (173)
T 2rfl_A           38 FAEAEIIADLAADRRYRPDLILS---STAARCRQTTQAWQRAFNEG   80 (173)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEE---CSSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEE---CCCHHHHHHHHHHHHHCCCC
T ss_conf             99999999999965999788995---63457788768888633568


No 94 
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.79  E-value=31  Score=13.94  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=28.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHC
Q ss_conf             88999999999861268649999611358886128999999857
Q gi|254780368|r   93 EPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMR  136 (249)
Q Consensus        93 D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg  136 (249)
                      |.......+..++...++|+|+++-.++-+..-.++-.+.+..+
T Consensus        53 d~~~~~~~l~~~~~~~~~dlIiTtGGtg~g~~D~t~ea~~~~~~   96 (172)
T 1mkz_A           53 NRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD   96 (172)
T ss_dssp             CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCHHHHHHHHH
T ss_conf             57999999999876256761585253134777667999988666


No 95 
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=23.96  E-value=32  Score=13.84  Aligned_cols=75  Identities=15%  Similarity=0.080  Sum_probs=48.4

Q ss_pred             CCHHHHHH---HHHHHHHC---CCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEE
Q ss_conf             78899999---99998612---6864999961135888612899999985796133244334328659999835896799
Q gi|254780368|r   92 LEPLSIAK---ILREIVKK---ENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMT  165 (249)
Q Consensus        92 ~D~~~~A~---~La~~i~~---~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~  165 (249)
                      .||.....   .++..++.   .++|.|++ -   +...=..++.+|..||.|++-.=.+-..-+..+......+.|..+
T Consensus        34 ~dp~~~~~~~~~l~~~~~~~~~~~~D~Ivg-i---e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~~~~~~~  109 (180)
T 1zn8_A           34 KDPASFRAAIGLLARHLKATHGGRIDYIAG-L---DSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAE  109 (180)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHTTCCCEEEE-E---TTTHHHHHHHHHHHHTCEEEEEEETTCCCSSEEEEEEEETTEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-E---CCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEECCCC
T ss_conf             199999999999999998745678889998-2---566436016889972998289996687888617999986645640


Q ss_pred             EEECC
Q ss_conf             99639
Q gi|254780368|r  166 METPL  170 (249)
Q Consensus       166 v~~~l  170 (249)
                      .++..
T Consensus       110 ~~~~~  114 (180)
T 1zn8_A          110 LEIQK  114 (180)
T ss_dssp             EEEET
T ss_pred             EEEEC
T ss_conf             68850


No 96 
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=23.89  E-value=32  Score=13.83  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=48.7

Q ss_pred             EEEEECCCHHHHHHHHH----HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHH
Q ss_conf             99997141015888887----85077762376336547889999999998612686499996113588861289999998
Q gi|254780368|r   59 IVVSIGSCKVEEVLKNS----LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL  134 (249)
Q Consensus        59 ~~lsvG~~~~~~~Lr~a----lAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~  134 (249)
                      +++-||..+.....+++    =.+|..--++|.. +-..+.-+-+.+ ...++.++++|++|.    +.++++|+.+|.+
T Consensus        16 V~Ii~GS~SD~~~~~~a~~~L~~~Gi~~e~~V~S-aHR~p~~l~~~~-~~~~~~~~~ViIa~A----G~aaaLpgvvA~~   89 (183)
T 1o4v_A           16 VGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVS-AHRTPDRMFEYA-KNAEERGIEVIIAGA----GGAAHLPGMVASI   89 (183)
T ss_dssp             EEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECC-TTTCHHHHHHHH-HHTTTTTCCEEEEEE----ESSCCHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEH-HHHCHHHHHHHH-HHHHHCCCEEEEEEC----CCCCCCCCEEEEE
T ss_conf             9999685743999999999999829917998743-750938899999-999977985999964----6766887548873


Q ss_pred             HCCCCEEEEEE
Q ss_conf             57961332443
Q gi|254780368|r  135 MRWPQATFVSN  145 (249)
Q Consensus       135 Lg~p~vt~v~~  145 (249)
                      -.+|-+..=..
T Consensus        90 t~~PVIgVP~~  100 (183)
T 1o4v_A           90 THLPVIGVPVK  100 (183)
T ss_dssp             CSSCEEEEEEC
T ss_pred             CCCEEEEECCC
T ss_conf             26117861157


No 97 
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=23.63  E-value=18  Score=15.48  Aligned_cols=27  Identities=4%  Similarity=-0.059  Sum_probs=12.9

Q ss_pred             HCCCCCEEEEEECCCCCCCEEHHHHHH
Q ss_conf             126864999961135888612899999
Q gi|254780368|r  106 KKENPIIVIAGKQTTDNESNQTGQMLA  132 (249)
Q Consensus       106 ~~~~~DLIl~G~~S~D~~~g~v~~~lA  132 (249)
                      ++..||+|++..+=.|.+.-.+--.+-
T Consensus        57 ~~~~~DliilD~~MP~~dG~e~~~~ir   83 (145)
T 3kyj_B           57 AQPNVDLILLDIEMPVMDGMEFLRHAK   83 (145)
T ss_dssp             HCTTCCEEEECTTSCCCTTCHHHHHHH
T ss_pred             HCCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf             369998999878999999999999998


No 98 
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI-2, protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=23.44  E-value=16  Score=15.78  Aligned_cols=34  Identities=6%  Similarity=0.145  Sum_probs=17.7

Q ss_pred             HHHHHHHCCC--CCEEEEEECCCCCCCEEHHHHHHHHHCCCC
Q ss_conf             9999861268--649999611358886128999999857961
Q gi|254780368|r  100 ILREIVKKEN--PIIVIAGKQTTDNESNQTGQMLAALMRWPQ  139 (249)
Q Consensus       100 ~La~~i~~~~--~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~  139 (249)
                      ++...+++..  -++++.+-      .|..-.+++.+||+|.
T Consensus       144 ~l~~i~~~~~~~~~vlVVsH------Ggvi~~l~~~llg~p~  179 (219)
T 2qni_A          144 AVKAVLDRHDARQPIAFVGH------GGVGTLLKCHIEGRGI  179 (219)
T ss_dssp             HHHHHHHTCCTTSCEEEEEC------HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHCCCCCEEEEEC------HHHHHHHHHHHCCCCH
T ss_conf             99999998427986899977------7999999999819895


No 99 
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=23.36  E-value=33  Score=13.77  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=37.9

Q ss_pred             E-EEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             8-9999714101588888785077762376336547889999999998612686499996113
Q gi|254780368|r   58 V-IVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQT  119 (249)
Q Consensus        58 V-~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S  119 (249)
                      + .+=.||-..---+|-.+||-|.-..+++.. ...+.-.....+...+++.++.+|+.....
T Consensus       266 v~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE-~~~~~~~i~~~i~~~~~~~~~~vIVVaEG~  327 (487)
T 2hig_A          266 VGVVKLMGRDSGFIAAQAAVASAQANICLVPE-NPISEQEVMSLLERRFCHSRSCVIIVAEGF  327 (487)
T ss_dssp             EEEEEECCSSCCHHHHHHHHHHTCCSEEECTT-SCCCHHHHHHHHHHHTTSCSEEEEEEETTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCCCEEECCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             07999668765489999998628873897788-889999999999998723797549970452


No 100
>2xlt_A Flavin-containing monooxygenase; oxidoreductase, trimethyaminuria; HET: FAD NA0 EPE; 2.20A {Methylophaga aminisulfidivorans} PDB: 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xlr_A* 2xls_A*
Probab=22.42  E-value=34  Score=13.65  Aligned_cols=53  Identities=11%  Similarity=0.076  Sum_probs=32.6

Q ss_pred             CEEEEEEEEEC--CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHH
Q ss_conf             13324433432--865999983589679999639889998435565454698889
Q gi|254780368|r  139 QATFVSNIKII--DNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNI  191 (249)
Q Consensus       139 ~vt~v~~i~~~--~~~~~v~r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~i  191 (249)
                      +-+.|.+++..  ++.++++-......+......-+|+.+....+.|++|.++++
T Consensus       127 f~t~V~~V~~~~~~~~w~v~~~~~~~~~~~~~~fD~VvVatG~~~~P~iP~i~G~  181 (461)
T 2xlt_A          127 FNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGF  181 (461)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSEECCCCCBTT
T ss_pred             CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             0678999998489977999983122212579999899966005897778898887


No 101
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=22.10  E-value=34  Score=13.61  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--------CC--CC-----------HHHHHHH
Q ss_conf             999999998559985289999714101588888785077762376336--------54--78-----------8999999
Q gi|254780368|r   42 ALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--------ET--LE-----------PLSIAKI  100 (249)
Q Consensus        42 AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--------~~--~D-----------~~~~A~~  100 (249)
                      +++.|-+|.+.  |-+|+.++-.  ...+.++   +.|.. -+.+...        ..  ..           .+.....
T Consensus        24 ~l~la~~L~~~--GH~V~~~t~~--~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   95 (430)
T 2iyf_A           24 SLEVIRELVAR--GHRVTYAIPP--VFADKVA---ATGPR-PVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQ   95 (430)
T ss_dssp             GHHHHHHHHHT--TCEEEEEECG--GGHHHHH---TTSCE-EEECCCCSCCTTSCGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCEEEEEECC--HHHHHHH---HCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999978--8989999782--1677788---66987-887167787432351345667899999999999999999


Q ss_pred             HHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE
Q ss_conf             9998612686499996113588861289999998579613324
Q gi|254780368|r  101 LREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV  143 (249)
Q Consensus       101 La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v  143 (249)
                      +.+.++...||+|++-.      ....+..+|+.+|+|++...
T Consensus        96 l~~~~~~~~pD~vi~~~------~~~~~~~~a~~~~iP~v~~~  132 (430)
T 2iyf_A           96 LADAYADDIPDLVLHDI------TSYPARVLARRWGVPAVSLS  132 (430)
T ss_dssp             HHHHHTTSCCSEEEEET------TCHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHCCCCEEEEECC------CCHHHHHHHHHCCCCEEEEE
T ss_conf             99998604983999757------30269999998199989995


No 102
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae}
Probab=22.05  E-value=15  Score=15.86  Aligned_cols=18  Identities=11%  Similarity=0.200  Sum_probs=7.8

Q ss_pred             CCCHHHHHHHHHHHHHHC
Q ss_conf             260136899999999855
Q gi|254780368|r   35 MNPFDEIALEESLQLREK   52 (249)
Q Consensus        35 in~~D~~AlE~Al~lke~   52 (249)
                      -|..|+-.++.-+.|.++
T Consensus        80 k~~i~~~~l~~L~~La~~   97 (574)
T 3hjb_A           80 KNLVNAETMQHLFALAKE   97 (574)
T ss_dssp             SSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
T ss_conf             995899999999999997


No 103
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.02  E-value=35  Score=13.60  Aligned_cols=52  Identities=17%  Similarity=0.176  Sum_probs=34.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC-CCCC--HHHHHHHHHHHHHC
Q ss_conf             5289999714101588888785077762376336-5478--89999999998612
Q gi|254780368|r   56 TEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN-ETLE--PLSIAKILREIVKK  107 (249)
Q Consensus        56 ~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~-~~~D--~~~~A~~La~~i~~  107 (249)
                      -.+.++++.++.+.+.+++|...|+.-++.++.- ...+  .....+.|.+..++
T Consensus        65 ~Dlavi~vp~~~v~~~~~e~~~~gv~~~vi~s~Gf~e~~~~g~~~~~~l~~~a~~  119 (457)
T 2csu_A           65 IDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK  119 (457)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8989999577888999999997599889971666653222124689999998875


No 104
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=21.94  E-value=35  Score=13.59  Aligned_cols=79  Identities=6%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--CCC-CHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             1368999999998559985289999714101588888785077762376336--547-8899999999986126864999
Q gi|254780368|r   38 FDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--ETL-EPLSIAKILREIVKKENPIIVI  114 (249)
Q Consensus        38 ~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--~~~-D~~~~A~~La~~i~~~~~DLIl  114 (249)
                      +.+.-.+.+-+++++....++--+.++++...++++++.+.|+++.+.+---  .+. -...+...+..+-++.+.++.+
T Consensus        20 ~~~~~~~la~~l~~~~~~v~~~fle~~~P~l~~~l~~l~~~g~~~vvvvP~fl~~G~h~~~dip~~~~~~~~~~~~~i~~   99 (126)
T 3lyh_A           20 WCETFEKLAEPTVESIENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLRKDVPAMIERLEAEHGVTIRL   99 (126)
T ss_dssp             HHHHHHHHHHHHHHHSTTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999999999996589847999826899999999999976998799998132566114656999999999846966998


Q ss_pred             EE
Q ss_conf             96
Q gi|254780368|r  115 AG  116 (249)
Q Consensus       115 ~G  116 (249)
                      +.
T Consensus       100 ~~  101 (126)
T 3lyh_A          100 AE  101 (126)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             78


No 105
>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri}
Probab=21.84  E-value=35  Score=13.57  Aligned_cols=45  Identities=18%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             HHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEE
Q ss_conf             999861268649999611358886128999999857961332443
Q gi|254780368|r  101 LREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSN  145 (249)
Q Consensus       101 La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~  145 (249)
                      +++.+++-.-=+|+.|......+....--.+++.+++|.++-...
T Consensus        27 ~~~li~~akrP~ii~G~g~~~~~~~~~l~~~~~~~~iPv~tt~~~   71 (170)
T 3cf4_G           27 AAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSS   71 (170)
T ss_dssp             HHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTT
T ss_pred             HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf             999999668989994665250669999999999859998987000


No 106
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor}
Probab=21.69  E-value=35  Score=13.55  Aligned_cols=57  Identities=26%  Similarity=0.234  Sum_probs=24.4

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC--------CCCHHHH---HHHHHHHHHCCCCCEEEE
Q ss_conf             852899997141015888887850777623763365--------4788999---999999861268649999
Q gi|254780368|r   55 ATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNE--------TLEPLSI---AKILREIVKKENPIIVIA  115 (249)
Q Consensus        55 g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~--------~~D~~~~---A~~La~~i~~~~~DLIl~  115 (249)
                      |.+|++++.    ..+.+..+..+|||..+-.....        ..++...   ...+.+.....++|+||-
T Consensus       253 G~~vi~~~~----s~~~~~~~~~lGA~~vid~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  320 (456)
T 3krt_A          253 GANPICVVS----SPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFE  320 (456)
T ss_dssp             TCEEEEEES----SHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred             CCCEEEEEC----CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             991579957----88999999975997999577642000010123440345679999999838998529998


No 107
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.31  E-value=36  Score=13.51  Aligned_cols=19  Identities=11%  Similarity=0.237  Sum_probs=10.4

Q ss_pred             HHCCCCCEEEEEECCCCCC
Q ss_conf             6126864999961135888
Q gi|254780368|r  105 VKKENPIIVIAGKQTTDNE  123 (249)
Q Consensus       105 i~~~~~DLIl~G~~S~D~~  123 (249)
                      +++..||+||+-.+-.+.+
T Consensus        45 ~~~~~pdlillDi~MP~~d   63 (141)
T 3cu5_A           45 ALKHPPNVLLTDVRMPRMD   63 (141)
T ss_dssp             HTTSCCSEEEEESCCSSSC
T ss_pred             HHHCCCCEEEEECCCCCCC
T ss_conf             9867999899736899999


No 108
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=20.97  E-value=36  Score=13.46  Aligned_cols=68  Identities=13%  Similarity=0.071  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHH--HHHHHCCCCEEEE---------EEEEECCCEEEEEEECCCC
Q ss_conf             8999999999861268649999611358886128999--9998579613324---------4334328659999835896
Q gi|254780368|r   94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQM--LAALMRWPQATFV---------SNIKIIDNHAIVTREVGHG  162 (249)
Q Consensus        94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~--lA~~Lg~p~vt~v---------~~i~~~~~~~~v~r~~e~g  162 (249)
                      ....|.-|...+++.|+|.++-     |. +...|-.  =|+++|+|+.=-|         -.-+++++++++++...+-
T Consensus       413 ~~~~A~~ly~~L~~~Gi~vllD-----Dr-~~~~G~Kf~dadliGiP~~ivV~~~~l~~~~g~~~~~~~~V~ir~R~t~~  486 (505)
T 1ati_A          413 ITEYAKRLKARLLALGLGRVLY-----ED-TGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTME  486 (505)
T ss_dssp             HHHHHHHHHHHHHTTCSSCEEE-----CC-CSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEE-----CC-CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             9999999999999789968998-----89-99978988863652999899995761002457543338869999889983


Q ss_pred             EEEEE
Q ss_conf             79999
Q gi|254780368|r  163 TMTME  167 (249)
Q Consensus       163 ~e~v~  167 (249)
                      .+++.
T Consensus       487 ~~~v~  491 (505)
T 1ati_A          487 QIRLH  491 (505)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             68989


No 109
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=20.88  E-value=36  Score=13.45  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=15.6

Q ss_pred             CCCCEEEECC-CCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             7762376336-547889999999998612686499996
Q gi|254780368|r   80 ADRGILIESN-ETLEPLSIAKILREIVKKENPIIVIAG  116 (249)
Q Consensus        80 aD~ai~i~d~-~~~D~~~~A~~La~~i~~~~~DLIl~G  116 (249)
                      ||++|.+... ....++.....|.+++++.++|.|..|
T Consensus        49 AD~~~~i~~~~~~~~sYld~e~Ii~ia~~~~~daIhPg   86 (461)
T 2dzd_A           49 ADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPG   86 (461)
T ss_dssp             SSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECC
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf             99999918988733222699999999999786999858


No 110
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=20.47  E-value=37  Score=13.39  Aligned_cols=71  Identities=7%  Similarity=-0.029  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHH--HHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEE
Q ss_conf             99999999986126864999961135888612899999--985796133244334328659999835896799996
Q gi|254780368|r   95 LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLA--ALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMET  168 (249)
Q Consensus        95 ~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA--~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~  168 (249)
                      ...|+-|...+++.+.+..+   ...|..++.+|-..+  ..+|+|+.--|..=+++++++++++....-.+++.+
T Consensus       354 ~e~a~~l~~~L~~~~i~v~~---~~~d~~~~SiGkr~~~~d~iGiP~~i~v~~~~le~~~VtiR~Rdt~~q~~v~i  426 (454)
T 1g5h_A          354 RQVCQGLLNELLENGISVWP---GYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHI  426 (454)
T ss_dssp             HHHHHHHHHHHHHTTCCEEE---GGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEET
T ss_pred             HHHHHHHHHHHHHCCCEEEE---CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEH
T ss_conf             99999999999976986773---03556566873999988871899899988885028968999879883588899


No 111
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=20.46  E-value=37  Score=13.39  Aligned_cols=99  Identities=16%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEE-EE--ECC----CHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCC
Q ss_conf             3689999999985599852899-99--714----1015888887850777623763365-47889999999998612686
Q gi|254780368|r   39 DEIALEESLQLREKGIATEVIV-VS--IGS----CKVEEVLKNSLAMGADRGILIESNE-TLEPLSIAKILREIVKKENP  110 (249)
Q Consensus        39 D~~AlE~Al~lke~~~g~~V~~-ls--vG~----~~~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~La~~i~~~~~  110 (249)
                      |...++.+.....+. |..+.+ ++  .++    ....+..+.+..+|+|+ |.+.|-. .+.|..+...+....+..+.
T Consensus       142 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~Gad~-I~l~Dt~G~~~P~~v~~lv~~lk~~~~~  219 (539)
T 1rqb_A          142 DPRNMAHAMAAVKKA-GKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADS-IALKDMAALLKPQPAYDIIKAIKDTYGQ  219 (539)
T ss_dssp             CTHHHHHHHHHHHHT-TCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSE-EEEEETTCCCCHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             999889999999976-99568999955788778999999999987259878-9955866665899999999999986586


Q ss_pred             CEEEEEECCC-CCCCEEHHHHHHHHHCCCCE
Q ss_conf             4999961135-88861289999998579613
Q gi|254780368|r  111 IIVIAGKQTT-DNESNQTGQMLAALMRWPQA  140 (249)
Q Consensus       111 DLIl~G~~S~-D~~~g~v~~~lA~~Lg~p~v  140 (249)
                      ++.+ +-++- |.+.+.--.+-|-..|.-.+
T Consensus       220 ~~~i-~~H~Hnt~Gla~An~laAieaGad~v  249 (539)
T 1rqb_A          220 KTQI-NLHCHSTTGVTEVSLMKAIEAGVDVV  249 (539)
T ss_dssp             TCCE-EEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred             CCCE-EEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf             4432-56634887629999999998599999


No 112
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=20.39  E-value=37  Score=13.38  Aligned_cols=11  Identities=18%  Similarity=0.126  Sum_probs=4.0

Q ss_pred             HHHHHHHCCCC
Q ss_conf             99999857961
Q gi|254780368|r  129 QMLAALMRWPQ  139 (249)
Q Consensus       129 ~~lA~~Lg~p~  139 (249)
                      ..+|+.||+++
T Consensus        72 ~~~a~~Lgi~~   82 (268)
T 1xng_A           72 LNLCEKFSIPY   82 (268)
T ss_dssp             HHHHHHHTCCE
T ss_pred             HHHHHHHHHCC
T ss_conf             99999833023


No 113
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A*
Probab=20.29  E-value=37  Score=13.37  Aligned_cols=43  Identities=16%  Similarity=0.304  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE
Q ss_conf             99999998612686499996113588861289999998579613324
Q gi|254780368|r   97 IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV  143 (249)
Q Consensus        97 ~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v  143 (249)
                      ..+-||.-++...||+|++ -   -.+.--.+.+++..||.|....+
T Consensus        16 ~~~~La~~I~~~~pD~IVg-I---~rGG~i~A~~ls~~L~~~~~~~i   58 (213)
T 2jky_A           16 LCQVSAERIKNFKPDLIIA-I---GGGGFIPARILRTFLKEPGVPTI   58 (213)
T ss_dssp             HHHTTHHHHHHHCCSEEEE-C---SGGGHHHHHHHHHHHCCTTSCCC
T ss_pred             HHHHHHHHHHCCCCCEEEE-E---CCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999975889999999-8---98889999999998523136765


No 114
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Probab=20.10  E-value=18  Score=15.44  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=15.1

Q ss_pred             HHHHHHHCCCCCCEEEEEECCCHHH-HHHHHHHH
Q ss_conf             9999985599852899997141015-88888785
Q gi|254780368|r   45 ESLQLREKGIATEVIVVSIGSCKVE-EVLKNSLA   77 (249)
Q Consensus        45 ~Al~lke~~~g~~V~~lsvG~~~~~-~~Lr~alA   77 (249)
                      .|-++++.  ...|+++.+|+.... .++-++|.
T Consensus        68 ~a~~i~~~--~~~iV~IGIGGS~LGpkal~~aL~   99 (446)
T 3ff1_A           68 ASKRIKEN--SDVLVVIGIGGSYLGARAAIEMLT   99 (446)
T ss_dssp             HHHHHHHH--CSEEEEECCGGGTHHHHHHHHHHS
T ss_pred             HHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHH
T ss_conf             99999827--988999935087899999999999


No 115
>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A
Probab=20.06  E-value=20  Score=15.06  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=16.6

Q ss_pred             HHHHHHCCCCCCEEEEEECCCHHH-HHHHHHHHH
Q ss_conf             999985599852899997141015-888887850
Q gi|254780368|r   46 SLQLREKGIATEVIVVSIGSCKVE-EVLKNSLAM   78 (249)
Q Consensus        46 Al~lke~~~g~~V~~lsvG~~~~~-~~Lr~alAm   78 (249)
                      +-+++..  ...|+++.||+.... .++-++|..
T Consensus        65 ~~~i~~~--~~~iV~IGIGGS~LGp~~~~~al~~   96 (445)
T 1b0z_A           65 AERIRNH--SDALVVIGIGGSYLGARAAIEALSH   96 (445)
T ss_dssp             HHHHHHH--CSEEEEECCGGGTHHHHHHHHHHSC
T ss_pred             HHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf             9999845--9889999250766899999999875


Done!