Query gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 249 No_of_seqs 134 out of 1509 Neff 6.2 Searched_HMMs 23785 Date Mon May 30 10:25:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780368.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1efp_B ETF, protein (electron 100.0 0 0 525.5 26.7 248 1-249 1-252 (252) 2 1efv_B Electron transfer flavo 100.0 0 0 521.4 29.7 248 1-248 4-255 (255) 3 1o97_C Electron transferring f 100.0 0 0 513.0 24.7 245 1-247 1-262 (264) 4 3ih5_A Electron transfer flavo 99.6 1.7E-14 7.3E-19 112.0 13.5 149 33-186 15-180 (217) 5 1o97_D Electron transferring f 99.5 1.4E-12 5.7E-17 99.8 14.1 147 34-185 13-164 (320) 6 3fet_A Electron transfer flavo 99.2 2.1E-10 8.9E-15 85.7 11.5 133 38-186 11-144 (166) 7 1efv_A Electron transfer flavo 98.8 4.7E-07 2E-11 64.2 15.1 142 34-187 14-161 (315) 8 1efp_A ETF, protein (electron 98.4 1.1E-05 4.4E-10 55.5 13.1 133 41-184 16-154 (307) 9 3mt0_A Uncharacterized protein 94.2 0.16 6.9E-06 28.5 7.0 100 35-140 16-124 (290) 10 3dlo_A Universal stress protei 94.0 0.15 6.4E-06 28.7 6.6 100 36-140 35-152 (155) 11 1q77_A Hypothetical protein AQ 93.4 0.26 1.1E-05 27.3 6.9 86 32-121 10-121 (138) 12 3hgm_A Universal stress protei 93.0 0.31 1.3E-05 26.7 6.9 99 35-138 11-143 (147) 13 3olq_A Universal stress protei 92.7 0.21 8.9E-06 27.8 5.7 102 34-139 15-145 (319) 14 2z08_A Universal stress protei 92.5 0.46 1.9E-05 25.7 7.1 99 35-140 11-134 (137) 15 3loq_A Universal stress protei 91.2 0.77 3.2E-05 24.2 7.8 103 32-140 28-158 (294) 16 1mjh_A Protein (ATP-binding do 91.1 0.37 1.5E-05 26.3 5.4 101 35-140 14-155 (162) 17 1jmv_A USPA, universal stress 89.6 0.29 1.2E-05 26.9 3.8 79 35-119 11-112 (141) 18 2dum_A Hypothetical protein PH 89.6 0.47 2E-05 25.6 4.8 100 34-140 13-152 (170) 19 3fg9_A Protein of universal st 87.2 1.5 6.4E-05 22.3 9.8 99 36-138 27-151 (156) 20 2ji4_A Phosphoribosyl pyrophos 87.1 1.5 6.4E-05 22.3 9.2 134 5-142 59-220 (379) 21 3fdx_A Putative filament prote 85.0 1.9 8.2E-05 21.6 7.9 90 37-131 14-128 (143) 22 1dku_A Protein (phosphoribosyl 84.2 2.1 8.9E-05 21.4 9.0 131 5-141 36-195 (317) 23 2pfs_A USP, universal stress p 82.5 2.5 0.0001 21.0 8.8 98 35-138 15-141 (150) 24 3cis_A Uncharacterized protein 80.7 2.8 0.00012 20.6 6.0 100 34-140 27-157 (309) 25 2ixd_A LMBE-related protein; h 79.4 3.1 0.00013 20.3 7.5 77 46-123 24-110 (242) 26 1vl2_A Argininosuccinate synth 73.8 4.4 0.00019 19.3 8.0 96 45-144 30-153 (421) 27 1uan_A Hypothetical protein TT 73.0 4.6 0.0002 19.2 7.0 76 47-123 23-108 (227) 28 2p8u_A Hydroxymethylglutaryl-C 70.4 4.9 0.00021 19.0 4.3 31 109-139 94-124 (478) 29 2dy0_A APRT, adenine phosphori 70.3 5.3 0.00022 18.8 7.1 84 82-169 31-119 (190) 30 2qsj_A DNA-binding response re 69.6 5.5 0.00023 18.7 5.7 68 35-108 58-125 (154) 31 2gm3_A Unknown protein; AT3G01 67.7 6 0.00025 18.5 6.9 96 39-138 27-157 (175) 32 3dah_A Ribose-phosphate pyroph 66.4 6.4 0.00027 18.3 9.9 143 5-152 34-204 (319) 33 2v4w_A Hydroxymethylglutaryl-C 66.4 5.5 0.00023 18.7 3.8 27 111-137 77-103 (460) 34 1l1q_A Adenine phosphoribosylt 65.3 6.7 0.00028 18.2 6.3 87 93-183 34-130 (186) 35 1ex0_A Coagulation factor XIII 63.1 7.3 0.00031 17.9 8.8 67 90-156 251-351 (731) 36 1tq8_A Hypothetical protein RV 61.8 7.7 0.00033 17.8 7.6 99 35-138 26-152 (163) 37 1u9y_A RPPK;, ribose-phosphate 59.7 8.4 0.00035 17.5 7.5 132 5-141 27-183 (284) 38 1iow_A DD-ligase, DDLB, D-ALA\ 58.9 8.7 0.00036 17.5 6.3 28 150-177 174-205 (306) 39 3eul_A Possible nitrate/nitrit 57.4 9.2 0.00039 17.3 7.5 66 35-106 69-134 (152) 40 3beo_A UDP-N-acetylglucosamine 57.3 5.9 0.00025 18.5 2.6 38 100-140 86-123 (375) 41 1xpm_A 3-hydroxy-3-methylgluta 56.7 9.5 0.0004 17.2 4.1 10 110-119 132-141 (396) 42 1kor_A Argininosuccinate synth 55.2 10 0.00042 17.1 8.0 95 47-144 18-140 (400) 43 3a32_A Probable threonyl-tRNA 53.4 11 0.00045 16.9 4.5 66 96-166 358-426 (471) 44 2nz2_A Argininosuccinate synth 52.4 11 0.00046 16.8 8.8 92 47-142 23-142 (413) 45 1ysl_A HMG-COA synthase; thiol 51.2 12 0.00049 16.7 4.0 86 33-120 61-161 (402) 46 1o57_A PUR operon repressor; p 50.8 12 0.00049 16.6 4.7 99 92-196 110-220 (291) 47 3fk5_A 3-oxoacyl-synthase III; 49.9 12 0.00051 16.5 5.0 78 41-118 64-152 (338) 48 1k92_A Argininosuccinate synth 48.4 13 0.00054 16.4 7.8 113 7-139 4-149 (455) 49 3cwc_A Putative glycerate kina 48.4 13 0.00054 16.4 3.9 33 93-125 113-147 (383) 50 3cz5_A Two-component response 47.8 13 0.00055 16.3 6.2 66 35-106 59-124 (153) 51 2gv8_A Monooxygenase; FMO, FAD 47.7 13 0.00055 16.3 4.9 57 139-195 134-191 (447) 52 3jpw_A Glutamate [NMDA] recept 47.7 13 0.00055 16.3 5.4 17 95-111 120-136 (363) 53 1v4v_A UDP-N-acetylglucosamine 47.7 13 0.00055 16.3 3.4 84 53-140 31-119 (376) 54 1to6_A Glycerate kinase; glyce 45.9 13 0.00055 16.3 2.9 35 92-126 107-143 (371) 55 3dzc_A UDP-N-acetylglucosamine 44.7 11 0.00045 16.9 2.3 85 54-141 52-140 (396) 56 2is8_A Molybdopterin biosynthe 43.7 15 0.00063 15.9 8.1 78 57-138 3-91 (164) 57 1y0b_A Xanthine phosphoribosyl 43.7 15 0.00063 15.9 4.8 87 92-183 33-133 (197) 58 1a9x_A Carbamoyl phosphate syn 43.7 9.9 0.00042 17.1 2.0 13 151-163 202-214 (1073) 59 3iaa_A CALG2; glycosyltransfer 42.9 15 0.00065 15.8 10.3 90 42-144 37-148 (416) 60 1g2q_A Adenine phosphoribosylt 42.2 16 0.00067 15.8 7.9 74 106-183 56-135 (187) 61 2vpq_A Acetyl-COA carboxylase; 42.0 16 0.00067 15.7 6.3 12 151-162 194-205 (451) 62 2ywx_A Phosphoribosylaminoimid 41.3 16 0.00069 15.7 4.5 78 59-145 2-83 (157) 63 1q74_A 1D-MYO-inosityl 2-aceta 39.8 17 0.00073 15.5 5.8 80 35-117 12-137 (303) 64 2f82_A HMG-COA synthase; HMGS1 37.7 19 0.00078 15.3 4.9 32 34-65 44-81 (450) 65 3f6c_A Positive transcription 36.8 19 0.00081 15.2 6.5 66 35-106 54-119 (134) 66 3jte_A Response regulator rece 36.2 20 0.00082 15.2 7.0 66 35-106 57-122 (143) 67 3lma_A Stage V sporulation pro 35.8 20 0.00084 15.1 4.3 30 90-119 108-138 (347) 68 1g0d_A Protein-glutamine gamma 35.5 19 0.00078 15.3 2.4 54 91-144 209-297 (695) 69 1zq1_A Glutamyl-tRNA(Gln) amid 35.0 20 0.00086 15.1 7.0 72 71-145 160-238 (438) 70 3idf_A USP-like protein; unive 34.2 21 0.00089 15.0 7.4 31 35-65 10-40 (138) 71 1jlj_A Gephyrin; globular alph 33.5 22 0.00091 14.9 9.6 87 48-138 7-107 (189) 72 2q3z_A Transglutaminase 2; tra 31.8 22 0.00093 14.8 2.3 55 91-145 214-303 (687) 73 2i4l_A Proline-tRNA ligase; al 31.4 23 0.00098 14.7 7.3 69 94-168 380-450 (458) 74 2qr6_A IMP dehydrogenase/GMP r 31.1 24 0.001 14.7 3.6 24 30-53 67-91 (393) 75 3ouz_A Biotin carboxylase; str 30.8 24 0.001 14.6 5.9 12 151-162 199-210 (446) 76 2pt5_A Shikimate kinase, SK; a 30.7 24 0.001 14.6 2.3 11 233-243 152-162 (168) 77 3aek_B Light-independent proto 30.6 24 0.001 14.6 9.2 82 40-140 290-371 (525) 78 2h06_A Ribose-phosphate pyroph 29.7 25 0.001 14.5 8.1 133 5-141 30-191 (326) 79 3b2n_A Uncharacterized protein 29.5 25 0.0011 14.5 7.2 66 35-106 57-122 (133) 80 2x3e_A 3-oxoacyl-[acyl-carrier 29.5 25 0.0011 14.5 3.3 42 78-119 98-142 (331) 81 2obn_A Hypothetical protein; p 29.0 26 0.0011 14.4 4.0 45 94-146 166-210 (349) 82 1vjj_A Protein-glutamine gluta 28.9 26 0.0011 14.4 2.8 66 91-156 209-309 (692) 83 1kgs_A DRRD, DNA binding respo 28.7 26 0.0011 14.4 5.5 42 39-82 58-99 (225) 84 1zuh_A Shikimate kinase; alpha 28.4 26 0.0011 14.4 2.5 14 63-76 13-27 (168) 85 1nyr_A Threonyl-tRNA synthetas 27.6 27 0.0011 14.3 6.2 13 234-246 627-639 (645) 86 3ot5_A UDP-N-acetylglucosamine 27.3 27 0.0012 14.2 6.0 84 55-141 56-143 (403) 87 3dmy_A Protein FDRA; predicted 26.0 29 0.0012 14.1 3.1 42 43-88 27-68 (480) 88 3o38_A Short chain dehydrogena 26.0 29 0.0012 14.1 8.3 73 41-116 35-108 (266) 89 2jba_A Phosphate regulon trans 25.9 29 0.0012 14.1 5.2 64 38-107 57-122 (127) 90 1m1n_A Nitrogenase molybdenum- 25.6 29 0.0012 14.0 8.7 100 42-143 129-252 (491) 91 2qv5_A AGR_C_5032P, uncharacte 25.4 30 0.0012 14.0 4.5 164 30-207 56-247 (261) 92 1ujc_A Phosphohistidine phosph 25.0 30 0.0013 14.0 2.7 84 45-136 34-121 (161) 93 2rfl_A Putative phosphohistidi 24.9 30 0.0013 14.0 2.4 41 95-138 38-80 (173) 94 1mkz_A Molybdenum cofactor bio 24.8 31 0.0013 13.9 7.9 44 93-136 53-96 (172) 95 1zn8_A APRT, adenine phosphori 24.0 32 0.0013 13.8 7.8 75 92-170 34-114 (180) 96 1o4v_A Phosphoribosylaminoimid 23.9 32 0.0013 13.8 8.2 81 59-145 16-100 (183) 97 3kyj_B CHEY6 protein, putative 23.6 18 0.00074 15.5 0.6 27 106-132 57-83 (145) 98 2qni_A AGR_C_517P, uncharacter 23.4 16 0.00067 15.8 0.3 34 100-139 144-179 (219) 99 2hig_A 6-phospho-1-fructokinas 23.4 33 0.0014 13.8 2.9 61 58-119 266-327 (487) 100 2xlt_A Flavin-containing monoo 22.4 34 0.0014 13.6 4.1 53 139-191 127-181 (461) 101 2iyf_A OLED, oleandomycin glyc 22.1 34 0.0014 13.6 9.4 88 42-143 24-132 (430) 102 3hjb_A Glucose-6-phosphate iso 22.0 15 0.00065 15.9 0.0 18 35-52 80-97 (574) 103 2csu_A 457AA long hypothetical 22.0 35 0.0015 13.6 3.6 52 56-107 65-119 (457) 104 3lyh_A Cobalamin (vitamin B12) 21.9 35 0.0015 13.6 6.3 79 38-116 20-101 (126) 105 3cf4_G Acetyl-COA decarbonylas 21.8 35 0.0015 13.6 2.9 45 101-145 27-71 (170) 106 3krt_A Crotonyl COA reductase; 21.7 35 0.0015 13.6 6.1 57 55-115 253-320 (456) 107 3cu5_A Two component transcrip 21.3 36 0.0015 13.5 3.8 19 105-123 45-63 (141) 108 1ati_A Glycyl-tRNA synthetase; 21.0 36 0.0015 13.5 6.9 68 94-167 413-491 (505) 109 2dzd_A Pyruvate carboxylase; b 20.9 36 0.0015 13.4 5.2 37 80-116 49-86 (461) 110 1g5h_A Mitochondrial DNA polym 20.5 37 0.0016 13.4 6.0 71 95-168 354-426 (454) 111 1rqb_A Transcarboxylase 5S sub 20.5 37 0.0016 13.4 9.7 99 39-140 142-249 (539) 112 1xng_A NH(3)-dependent NAD(+) 20.4 37 0.0016 13.4 4.1 11 129-139 72-82 (268) 113 2jky_A Hypoxanthine-guanine ph 20.3 37 0.0016 13.4 2.2 43 97-143 16-58 (213) 114 3ff1_A Glucose-6-phosphate iso 20.1 18 0.00075 15.4 -0.0 31 45-77 68-99 (446) 115 1b0z_A Protein (phosphoglucose 20.1 20 0.00086 15.1 0.3 31 46-78 65-96 (445) No 1 >1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Probab=100.00 E-value=0 Score=525.50 Aligned_cols=248 Identities=50% Similarity=0.819 Sum_probs=239.9 Q ss_pred CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC Q ss_conf 96999860303887605980788816324877332601368999999998559985289999714101588888785077 Q gi|254780368|r 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGA 80 (249) Q Consensus 1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGa 80 (249) |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|++|+++||||++++++||+|||||+ T Consensus 1 MkI~V~vK~VpD~~~~~~i~~~~~~~~~~~~~~~inp~D~~AlE~Al~lke~~~g~~V~v~s~G~~~~~~~lr~alamGa 80 (252) T 1efp_B 1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGA 80 (252) T ss_dssp CEEEEECCEEECTTSCCCBCTTSSCBCCTTCCEEECHHHHHHHHHHHHHHTTTSCSEEEEEEEESGGGHHHHHHHHHHTC T ss_pred CEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCC T ss_conf 97999999677888636883899878224683246854699999999975427980999999663787999998862379 Q ss_pred CCCEEEECC----CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE Q ss_conf 762376336----5478899999999986126864999961135888612899999985796133244334328659999 Q gi|254780368|r 81 DRGILIESN----ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT 156 (249) Q Consensus 81 D~ai~i~d~----~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~ 156 (249) |+++++.++ +++|+++||++||.++++.+|||||||+||+|+++||||+++|++|||||+|+|.+++++++.++++ T Consensus 81 d~a~~i~~~~~~~~~~d~~~ta~~la~~~~~~~~DLIl~G~~s~D~~~g~vg~~lAe~Lg~P~vt~v~~ie~~~~~~~v~ 160 (252) T 1efp_B 81 DRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVT 160 (252) T ss_dssp SEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEEEEECSSEEEEE T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEEECCEEEEE T ss_conf 82699992453466778999999999998741999999983256678884216889762898135789999829979999 Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCCCCCEEEEEEECCCCCCCCEEECCHH Q ss_conf 83589679999639889998435565454698889988521661204989076666845799951788524745537999 Q gi|254780368|r 157 REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236 (249) Q Consensus 157 r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~g~~~e~~~ 236 (249) |+.++|+|++++++|||+||+.++|+||||||++||+|+|||+++|+++|+|++..|++++.++++|+.|++++++++++ T Consensus 161 r~~e~g~e~ve~~lPavitv~~~~n~PR~pslk~im~A~kk~i~~~~~~dlg~~~~~~~~~~~~~~p~~r~~~~~~~~~~ 240 (252) T 1efp_B 161 REVDGGLQTIAVSLPAVVTADLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVD 240 (252) T ss_dssp EEETTEEEEEEEESSEEEEECTTSCCCCCCCHHHHHHHTTSCEEEEEGGGGTCCCCCSEEEEEEECCCCCCCCEECSSHH T ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEECCHHHCCCCCCCCEEEEEEECCCCCCCCEECCCHH T ss_conf 99689489999459779996568787767898899986158841717999498878855999984799884885868999 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999861769 Q gi|254780368|r 237 KLIEILKSKHDLL 249 (249) Q Consensus 237 eLv~~L~~e~~vi 249 (249) ||+++|| |++|| T Consensus 241 elv~~L~-e~gvI 252 (252) T 1efp_B 241 ELVGKLK-EAGVI 252 (252) T ss_dssp HHHTTC------- T ss_pred HHHHHHH-HCCCC T ss_conf 9999998-86899 No 2 >1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Probab=100.00 E-value=0 Score=521.37 Aligned_cols=248 Identities=44% Similarity=0.732 Sum_probs=240.3 Q ss_pred CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCC Q ss_conf 96999860303887605980788816324877332601368999999998559985289999714101588888785077 Q gi|254780368|r 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGA 80 (249) Q Consensus 1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGa 80 (249) |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|++|+++||||+.++++||+|||||| T Consensus 4 M~I~VcvKqVpD~~~~i~~~~~~~~~~~~~~~~vinp~D~~AlE~Al~lke~~~g~~v~v~s~Gp~~a~~~Lr~ala~Ga 83 (255) T 1efv_B 4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGA 83 (255) T ss_dssp CEEEEECCEEECTTSCCCBCTTSSSBCCTTCCEEECHHHHHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTC T ss_pred CEEEEEEEECCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCC T ss_conf 78999988677877625884899958716985445865799999999986517984389999680788999999862689 Q ss_pred CCCEEEECCC----CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE Q ss_conf 7623763365----478899999999986126864999961135888612899999985796133244334328659999 Q gi|254780368|r 81 DRGILIESNE----TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT 156 (249) Q Consensus 81 D~ai~i~d~~----~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~ 156 (249) |+++||+++. ..|+++++++++++++..+|||||||+||+|+++||||+++|++|||||+|+|.++++++++++++ T Consensus 84 D~a~li~d~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~i~v~ 163 (255) T 1efv_B 84 DRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVE 163 (255) T ss_dssp SEEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEEEETTEEEEE T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCEEEEE T ss_conf 80689860421235544999999999986454999999921132689890789999985887053799999979999999 Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCCCCCEEEEEEECCCCCCCCEEECCHH Q ss_conf 83589679999639889998435565454698889988521661204989076666845799951788524745537999 Q gi|254780368|r 157 REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236 (249) Q Consensus 157 r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~g~~~e~~~ 236 (249) |++++|+|++++++|||+||++++|+||||||++||+|+|||+++|+++|+|++..+++++.++++|+++++++++++++ T Consensus 164 r~~e~g~e~ve~~lPavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~~p~~~~~~~~ie~~~ 243 (255) T 1efv_B 164 REIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTE 243 (255) T ss_dssp EEETTEEEEEEEESSEEEEECGGGCCCCCCCHHHHHHTTTSCEEEECHHHHTCCCCCSEEEEEEECCCCCCCCEECSSHH T ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEECHHHCCCCCCCCCEEEEEECCCCCCCCEEEECHH T ss_conf 99589199999559889996178777878886789986159837965899598768972799996399878980976899 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999986176 Q gi|254780368|r 237 KLIEILKSKHDL 248 (249) Q Consensus 237 eLv~~L~~e~~v 248 (249) +|+++|+++++| T Consensus 244 elv~~L~e~g~i 255 (255) T 1efv_B 244 DLVAKLKEIGRI 255 (255) T ss_dssp HHHHHHHHTTCC T ss_pred HHHHHHHHHCCC T ss_conf 999999976679 No 3 >1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Probab=100.00 E-value=0 Score=512.99 Aligned_cols=245 Identities=32% Similarity=0.545 Sum_probs=226.1 Q ss_pred CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCC-CEEEEEECCCHHHHHHHHHHHHC Q ss_conf 96999860303887605980788816324877332601368999999998559985-28999971410158888878507 Q gi|254780368|r 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIAT-EVIVVSIGSCKVEEVLKNSLAMG 79 (249) Q Consensus 1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~-~V~~lsvG~~~~~~~Lr~alAmG 79 (249) |||+||+|||||++++++++++++.+++++++++|||||+||||+||||||+++|. +||++||||++++++||+||||| T Consensus 1 MkI~VcvKqVpD~~~~i~i~~~~~~l~~~~~~~~iNp~D~~AlE~Al~lkE~~g~~~~Vt~ls~Gp~~a~~~Lr~alAmG 80 (264) T 1o97_C 1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKG 80 (264) T ss_dssp CEEEEECCEEEEECTTCCBCTTSSSBCGGGEEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGGGHHHHHHHHHTT T ss_pred CEEEEEEEECCCCCCCEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHC T ss_conf 98999999677787716985899887546885436976799999999998447995699999815088899999999727 Q ss_pred CCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEEC--CCEEEE Q ss_conf 7762376336--547889999999998612686499996113588861289999998579613324433432--865999 Q gi|254780368|r 80 ADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKII--DNHAIV 155 (249) Q Consensus 80 aD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~--~~~~~v 155 (249) ||+++||+|+ +++|+++||++||+++++.+|||||||+||+|+++||||+++|++|||||+|+|.+++++ ++++++ T Consensus 81 aD~av~v~d~~~~~~d~~atA~~LA~~i~~~~~DLIl~G~qs~D~~tgqvg~~lAe~Lg~p~vt~v~~~~~~~~~~~~~v 160 (264) T 1o97_C 81 ADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVI 160 (264) T ss_dssp CSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEEEECCTTCSEEEE T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCCEEEE T ss_conf 97269996057778789999999999997439999999143469998834289999819981567888887179955999 Q ss_pred EEECCCC-EEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCC------CCCEEEEEEECCCCCCC Q ss_conf 9835896-7999963988999843556545469888998852166120498907666------68457999517885247 Q gi|254780368|r 156 TREVGHG-TMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDL------TPRLKVLRFEENRAERK 228 (249) Q Consensus 156 ~r~~e~g-~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~------~~~~~v~~~~~p~~~~~ 228 (249) +|++++| +|++++++|||+||++++|+||||||++||+|+||||++|+++|||++. .+++++.++++|++ ++ T Consensus 161 ~r~~~~g~~e~v~~~lPavitv~~~~n~PR~psl~~im~A~kk~i~~~~~~dl~~~~~~~g~~~s~t~v~~~~~P~~-~~ 239 (264) T 1o97_C 161 RRELEGGMLQEVEINCPAVLTIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEK-GR 239 (264) T ss_dssp EEECGGGCEEEEEEESSCEEEECTTSSCCTTCC----------CCEEECTGGGTCCGGGSSGGGSSSEEEEEECCCC-CC T ss_pred EEECCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECHHHCCCCHHHCCCCCCCEEEEEECCCCC-CC T ss_conf 99917984999987899899962576765679989999973799579559994989888666689768988648988-87 Q ss_pred CEEECC-----HHHHHHHHHHHHC Q ss_conf 455379-----9999999998617 Q gi|254780368|r 229 GLRLYS-----TTKLIEILKSKHD 247 (249) Q Consensus 229 g~~~e~-----~~eLv~~L~~e~~ 247 (249) +.++++ +++|+++|| |+| T Consensus 240 ~~~i~g~~~e~a~~l~~~L~-e~K 262 (264) T 1o97_C 240 ATMIEGTISEQAAKIIQIIN-EFK 262 (264) T ss_dssp CEECCSCHHHHHHHHHHHHH-HC- T ss_pred CEEEECCHHHHHHHHHHHHH-HHH T ss_conf 35981887999999999999-850 No 4 >3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Probab=99.61 E-value=1.7e-14 Score=111.99 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=124.6 Q ss_pred EECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCC Q ss_conf 332601368999999998559985289999714101588888785077762376336--547889999999998612686 Q gi|254780368|r 33 ISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENP 110 (249) Q Consensus 33 ~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~ 110 (249) -.+++...-+|..|.+|+++ .|++|+++.+|+. .++..+++.++|+|+.+++.++ ...++...+.+|++.+++.++ T Consensus 15 g~l~~~slEllt~A~~La~~-~g~~v~av~~G~~-~~~~a~~l~~~Ga~~V~~~~~~~~~~~~~~~~~~~l~~~i~~~~p 92 (217) T 3ih5_A 15 GIVADVSLELLTKGRSLANE-LNCQLEAVVAGTG-LKEIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQP 92 (217) T ss_dssp TEECHHHHHHHHHHHHHHHH-HTCCEEEEEEESC-CTTTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCC T ss_pred CEECHHHHHHHHHHHHHHHH-CCCEEEEEEECCC-HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99988999999999999986-3990999996797-388888775238733899824300022147788899999860498 Q ss_pred CEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCC-----------EEEEEEECCCCE--EEEEE--CCCEEEE Q ss_conf 49999611358886128999999857961332443343286-----------599998358967--99996--3988999 Q gi|254780368|r 111 IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDN-----------HAIVTREVGHGT--MTMET--PLPAVIT 175 (249) Q Consensus 111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~-----------~~~v~r~~e~g~--e~v~~--~lPavis 175 (249) ++||+| .+..+..+.|++|.+||+|++++|++++++++ .+.++|...+|. .++.. ..|.++| T Consensus 93 ~~Vl~~---~t~~gr~laprlAa~L~~~~vsdv~~l~~~~~~~~~~~~~~~~~l~~tr~~~~G~~~~tv~~~~~~p~i~T 169 (217) T 3ih5_A 93 QICLMG---ATVIGRDLGPRVSSALTSGLTADCTSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVNPEHRPQMAT 169 (217) T ss_dssp SEEEEE---CSHHHHHHHHHHHHHTTCCCBCSCSEEEEEEEEETTTTEEEEEEEEEEEESSSSSCEEEECCSSSSSEEEE T ss_pred CEEEEC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCEEEE T ss_conf 689972---77405469999999859981221599982687311012223662269999528848999993599868999 Q ss_pred EECCCCCCCCC Q ss_conf 84355654546 Q gi|254780368|r 176 VDLNLNEPRYI 186 (249) Q Consensus 176 v~~~~n~PR~p 186 (249) +..+..+|--+ T Consensus 170 vr~g~f~~~~~ 180 (217) T 3ih5_A 170 VREGVMKKEIV 180 (217) T ss_dssp ECTTSSCCCCS T ss_pred ECCCCCCCCCC T ss_conf 88884156767 No 5 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Probab=99.48 E-value=1.4e-12 Score=99.80 Aligned_cols=147 Identities=17% Similarity=0.239 Sum_probs=124.8 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCCCE Q ss_conf 326013689999999985599852899997141015888887850777623763365-4788999999999861268649 Q gi|254780368|r 34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNE-TLEPLSIAKILREIVKKENPII 112 (249) Q Consensus 34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~La~~i~~~~~DL 112 (249) .+++...-+|..|.+|+++ .|++|+++.+|. ..++..+++...|+|+.+++.++. ..++...+.+|++.+++.+|++ T Consensus 13 ~l~~~slEll~~A~~La~~-~g~~v~avv~G~-~~~~~a~~l~~~Gad~V~~~~~~~l~~~~~~~a~~l~~~i~~~~p~~ 90 (320) T 1o97_D 13 DLRPVSLELIGAANGLKKS-GEDKVVVAVIGS-QADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSV 90 (320) T ss_dssp EECTHHHHHHHHHHHHCSS-TTCEEEEEEEST-TGGGGHHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHHHHHHHCCSE T ss_pred EECHHHHHHHHHHHHHHHC-CCCCEEEEEECC-CHHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHCCCCE T ss_conf 9989999999999998871-799489999689-70999998755398789996682540354779999999998638988 Q ss_pred EEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCE--EEEEEC--CCEEEEEECCCCCCCC Q ss_conf 999611358886128999999857961332443343286599998358967--999963--9889998435565454 Q gi|254780368|r 113 VIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGT--MTMETP--LPAVITVDLNLNEPRY 185 (249) Q Consensus 113 Il~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~--e~v~~~--lPavisv~~~~n~PR~ 185 (249) ||++.- .....+.+++|.+|+.+++++++.++.+++.+..+|...+|. .+++++ .|.++|+..+.++|-- T Consensus 91 VL~~~T---~~GrdlaprlAarL~~~~vsDv~~l~~~~~~l~~~Rp~~gG~~~a~~~~~~~~~~v~tvr~~~f~~~~ 164 (320) T 1o97_D 91 VLLPHS---VDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLE 164 (320) T ss_dssp EEEECS---HHHHTTHHHHHHTSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEEEEECTTSSCCCC T ss_pred EEEECC---CCCCCHHHHHHHHHCCCEECCCEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCCCCC T ss_conf 999435---45677457889984898251402101368737999840253268986248887257886476544444 No 6 >3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Probab=99.20 E-value=2.1e-10 Score=85.71 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=102.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 13689999999985599852899997141015888887850777623763365478899999999986126864999961 Q gi|254780368|r 38 FDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGK 117 (249) Q Consensus 38 ~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~ 117 (249) .|...+.++..+... .+++.++.+|..+ +.+.|+|+.++..+... ...++..++++++ +||+||+|. T Consensus 11 e~~~~~~~~~t~a~~--~gev~aVvvG~~~-------~~~~Ga~~v~~~~~~~~--~~~~a~~~~~~~~--~~d~Vl~~~ 77 (166) T 3fet_A 11 DDMNFLRQVNTLVAG--KGDMDSVIIGEGD-------AKGLGSKVLYRAKKGTP--FDAVSEGILKIAG--NYDYIAIGS 77 (166) T ss_dssp SSHHHHHHHHHHHGG--GEEEEEEEESCCC-------CTTCCCSEEEEECTTCC--HHHHHHHHHHHHT--TCSEEEEEC T ss_pred CCHHHHHHHHHHHHC--CCCEEEEEECCHH-------HHHCCCEEEEECCCCCH--HHHHHHHHHHHHC--CCCEEEEEC T ss_conf 788799999998750--5966899976616-------54387419999279835--7789999999846--999999916 Q ss_pred CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEEC-CCEEEEEECCCCCCCCC Q ss_conf 1358886128999999857961332443343286599998358967999963-98899984355654546 Q gi|254780368|r 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETP-LPAVITVDLNLNEPRYI 186 (249) Q Consensus 118 ~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~~-lPavisv~~~~n~PR~p 186 (249) +.....++|+||.+|+.|++++|++++.+++.++++|...+|....++. -|.++|+.++.++|... T Consensus 78 ---t~~gr~~a~rlAa~l~~~~vsdv~~l~~~g~~~~~~r~~~gG~~~~~~~~~~~IvtVrpg~f~~~~~ 144 (166) T 3fet_A 78 ---TEVGREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESDARILTVAPGVIEAKDL 144 (166) T ss_dssp ---SHHHHHHHHHHHHHHCCCEEEEEEEEEESSSSEEEEEEEGGGTEEEEEEECCCEEEECTTSSCCCCC T ss_pred ---CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCEEEEECCCCCCCCCC T ss_conf ---8326678999999969973253489986797089998802880899995598099987986247767 No 7 >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Probab=98.78 E-value=4.7e-07 Score=64.21 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=104.6 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH-HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCC Q ss_conf 32601368999999998559985289999714101588888785-077762376336--547889999999998612686 Q gi|254780368|r 34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLA-MGADRGILIESN--ETLEPLSIAKILREIVKKENP 110 (249) Q Consensus 34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alA-mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~ 110 (249) .++|.-.-.|..|-+| |++|+++.+|.. .+..-.+++. .|+|+.|.+.++ +...+...+.++++.+++.+| T Consensus 14 ~l~~~s~Ell~~A~~L-----g~~v~avv~G~~-~~~~a~~l~~~~Gad~V~~~~~~~~~~~~~e~~a~al~~~~~~~~p 87 (315) T 1efv_A 14 SLAPITLNTITAATRL-----GGEVSCLVAGTK-CDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNY 87 (315) T ss_dssp EECTHHHHHHHHHHTT-----TSEEEEEEEESC-CHHHHHHHHHSTTCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHCC T ss_pred EECHHHHHHHHHHHHH-----CCCEEEEEECCC-CHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 9999999999999985-----897489998888-0899999851369878999458202035603457899888751485 Q ss_pred CEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCC--EEEEEE-CCCEEEEEECCCCCCCCCC Q ss_conf 4999961135888612899999985796133244334328659999835896--799996-3988999843556545469 Q gi|254780368|r 111 IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHG--TMTMET-PLPAVITVDLNLNEPRYIS 187 (249) Q Consensus 111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g--~e~v~~-~lPavisv~~~~n~PR~ps 187 (249) ++||+|.-. ...-+.++||.+|+.++++.+.+++.++. ..|...+| ..++++ ..|.++++..+..+|.-+. T Consensus 88 ~~VL~~~T~---~GrdlaprLAarL~~g~vsdv~~l~~~~~---~~r~~~~g~~~~~~~~~~~~~~~tvr~~~f~~~~~~ 161 (315) T 1efv_A 88 THICAGASA---FGKNLLPRVAAKLEVAPISDIIAIKSPDT---FVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATS 161 (315) T ss_dssp SEEEEESSH---HHHHHHHHHHHHHTCCCEEEECEEEETTE---EEEEETTTTEEEEEEECCSSEEEEECGGGSCCCCSS T ss_pred CEEEECCCH---HHHHHHHHHHHHCCCCCEEEEEEEECCCE---EEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC T ss_conf 489963774---36678999999809971516899945995---999997453179996247614887415643454455 No 8 >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 Probab=98.39 E-value=1.1e-05 Score=55.49 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=93.9 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHH-CCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 89999999985599852899997141015888887850-77762376336--5478899999999986126864999961 Q gi|254780368|r 41 IALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAM-GADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGK 117 (249) Q Consensus 41 ~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAm-GaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~ 117 (249) .+..+++-...+ . ++|+++.+|.. .+..-.++... |+|+.+.+.++ +..++...+.+++..+++..+ +|+|. T Consensus 16 ~st~Ell~aAr~-l-gdv~alv~G~~-~~~~a~~l~~~~GadkV~~~d~~~l~~y~~e~~a~~l~~~~~~~~~--vL~~~ 90 (307) T 1efp_A 16 DATAKAVAAVKA-L-GDVTVLCAGAS-AKAAAEEAAKIAGVAKVLVAEDALYGHRLAEPTAALIVGLAGDYSH--IAAPA 90 (307) T ss_dssp HHHHHHHHHHGG-G-SCEEEEEEETT-CHHHHHHHHTSTTEEEEEEEECGGGTTCCHHHHHHHHHHHHTTCSE--EEEES T ss_pred HHHHHHHHHHHH-H-CCCEEEEECCC-CHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE--EEEEC T ss_conf 899999999984-0-98179998899-5799999863569878999567200124413689998753034565--99814 Q ss_pred CCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCC--EEEEEE-CCCEEEEEECCCCCCC Q ss_conf 135888612899999985796133244334328659999835896--799996-3988999843556545 Q gi|254780368|r 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHG--TMTMET-PLPAVITVDLNLNEPR 184 (249) Q Consensus 118 ~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g--~e~v~~-~lPavisv~~~~n~PR 184 (249) .....-+.|++|.+|+.++++.+++++.++ .. +|...+| ..++.. ..|.++++..+...|. T Consensus 91 ---T~~GrdlaprlAarl~~gl~ad~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~tv~~~~f~~~ 154 (307) T 1efp_A 91 ---TTDAKNVMPRVAALLDVMVLSDVSAILDAD-TF--ERPIYAGNAIQVVKSKDAKKVFTIRTASFDAA 154 (307) T ss_dssp ---SHHHHHHHHHHHHHTTCCEEEEESEECSSS-EE--EEEEGGGTEEEEEEECSSSEEEEECGGGSCCC T ss_pred ---CCCHHHHHHHHHHHHCCCCCCCCCEEECCC-EE--EEEEECCCEEEEEECCCCCCEEEEECCCCCCC T ss_conf ---742125778999985788545530785398-38--99997461599998268860799725766665 No 9 >3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Probab=94.16 E-value=0.16 Score=28.53 Aligned_cols=100 Identities=8% Similarity=-0.009 Sum_probs=63.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC-HHHHHHH----HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC Q ss_conf 26013689999999985599852899997141-0158888----878507776237633654788999999999861268 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSC-KVEEVLK----NSLAMGADRGILIESNETLEPLSIAKILREIVKKEN 109 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~-~~~~~Lr----~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~ 109 (249) -++..+.||+.|++|..+ .+.+++++++-+. +.+..|. .+...|.+--+.+. ...++ +..|...++..+ T Consensus 16 ~s~~~~~al~~A~~lA~~-~~a~l~~l~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~---~~~I~~~a~~~~ 89 (290) T 3mt0_A 16 PDQLEGLALKRAQLIAGV-TQSHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQA--WKDSL---HQTIIAEQQAEG 89 (290) T ss_dssp SSCSCCHHHHHHHHHHHH-HCCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEE--CSSSH---HHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHH-HCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE--CCCCH---HHHHHHHHHHCC T ss_conf 987799999999999998-599799999804489999999999999964995589984--17987---999999999659 Q ss_pred CCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE Q ss_conf 6499996113588----861289999998579613 Q gi|254780368|r 110 PIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA 140 (249) Q Consensus 110 ~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v 140 (249) +|||++|.+..+. ..|.+...+......|-+ T Consensus 90 ~dlvv~g~~~~~~~~~~~~gs~~~~ll~~~~~pvl 124 (290) T 3mt0_A 90 CGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVL 124 (290) T ss_dssp CSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEE T ss_pred CCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCE T ss_conf 97336446778865567778589999985899802 No 10 >3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} Probab=94.02 E-value=0.15 Score=28.74 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=62.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH----------HHHHHHHHH----HHCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 60136899999999855998528999971410----------158888878----5077762376336547889999999 Q gi|254780368|r 36 NPFDEIALEESLQLREKGIATEVIVVSIGSCK----------VEEVLKNSL----AMGADRGILIESNETLEPLSIAKIL 101 (249) Q Consensus 36 n~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~----------~~~~Lr~al----AmGaD~ai~i~d~~~~D~~~~A~~L 101 (249) ++.-+.||+.|+++... .|.+++++.+=|.. .++.+.++. ..|.+--+.+.-..+ ++ +..| T Consensus 35 S~~s~~al~~A~~~A~~-~~~~l~lvhv~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g-~~---~~~I 109 (155) T 3dlo_A 35 SDRAERVLRFAAEEARL-RGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGK-EP---PDDI 109 (155) T ss_dssp SHHHHHHHHHHHHHHHH-HTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSS-CH---HHHH T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CH---HHHH T ss_conf 98999999999999998-3996999997438877766789999999999999999849994899999578-98---9999 Q ss_pred HHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE Q ss_conf 9986126864999961135888----61289999998579613 Q gi|254780368|r 102 REIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA 140 (249) Q Consensus 102 a~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v 140 (249) .+++++.++|||++|.+.-.+- -|.+...+......|.+ T Consensus 110 ~~~a~~~~adLIV~G~~~~~~~~~~~lGS~~~~vlr~a~~pVl 152 (155) T 3dlo_A 110 VDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVI 152 (155) T ss_dssp HHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEE T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEE T ss_conf 9999872998998568999975446057699999857899999 No 11 >1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Probab=93.37 E-value=0.26 Score=27.28 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=52.2 Q ss_pred CEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------------HHHHHHHHHHHCCCCCEEE Q ss_conf 733260136899999999855998528999971410-------------------------1588888785077762376 Q gi|254780368|r 32 KISMNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------------VEEVLKNSLAMGADRGILI 86 (249) Q Consensus 32 ~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------------~~~~Lr~alAmGaD~ai~i 86 (249) +.-.+++.+.||+.|..+... .+.+++++++=++. +.+.|++.+.--......+ T Consensus 10 ~~D~s~~s~~al~~A~~la~~-~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~ 88 (138) T 1q77_A 10 LTDAYSDCEKAITYAVNFSEK-LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLTGSTEIP 88 (138) T ss_dssp EESTTCCCHHHHHHHHHHHTT-TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHHSCCCCC T ss_pred EECCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 980998999999999998877-3984599997246211321012357764188999999999999999999842356227 Q ss_pred ECC-CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 336-54788999999999861268649999611358 Q gi|254780368|r 87 ESN-ETLEPLSIAKILREIVKKENPIIVIAGKQTTD 121 (249) Q Consensus 87 ~d~-~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D 121 (249) ... ...|+ +..|-+++++.++|||++|.+... T Consensus 89 ~~~v~~G~~---~~~I~~~a~e~~~DlIVmG~~~~~ 121 (138) T 1q77_A 89 GVEYRIGPL---SEEVKKFVEGKGYELVVWACYPSA 121 (138) T ss_dssp CEEEECSCH---HHHHHHHHTTSCCSEEEECSCCGG T ss_pred EEECCCCCH---HHHHHHHHHHCCCCEEEECCCCCC T ss_conf 873136998---999999999749999999289985 No 12 >3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Probab=93.02 E-value=0.31 Score=26.74 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=58.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------------HHHHHHHHHHHCCCCC-----E Q ss_conf 260136899999999855998528999971410-------------------------1588888785077762-----3 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------------VEEVLKNSLAMGADRG-----I 84 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------------~~~~Lr~alAmGaD~a-----i 84 (249) .+++.++||+.|+++... .+.+++++.+-+.. ..+.++.+...-.+.. + T Consensus 11 ~S~~s~~al~~A~~la~~-~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (147) T 3hgm_A 11 GSKGAVKALEKGVGLQQL-TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKV 89 (147) T ss_dssp SBHHHHHHHHHHHHHHHH-HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGE T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 999999999999999987-2998999998637765544323245244544799999999999999999999828997469 Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----EEHHHHHHHHHCCC Q ss_conf 7633654788999999999861268649999611358886----12899999985796 Q gi|254780368|r 85 LIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNES----NQTGQMLAALMRWP 138 (249) Q Consensus 85 ~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~----g~v~~~lA~~Lg~p 138 (249) ...-..| + .+..|.+++++.++|||++|.+.-.+-. |.+...+......| T Consensus 90 ~~~v~~g-~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~~~~l~~~~~~P 143 (147) T 3hgm_A 90 RAFVKGG-R---PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCP 143 (147) T ss_dssp EEEEEES-C---HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSC T ss_pred EEEEECC-C---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 9999637-7---8998877520358888997179998654562275999999728999 No 13 >3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Probab=92.74 E-value=0.21 Score=27.81 Aligned_cols=102 Identities=15% Similarity=0.053 Sum_probs=58.6 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC-----------HH------------HHHHHHHHHHCCCCCEEEECC- Q ss_conf 326013689999999985599852899997141-----------01------------588888785077762376336- Q gi|254780368|r 34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSC-----------KV------------EEVLKNSLAMGADRGILIESN- 89 (249) Q Consensus 34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~-----------~~------------~~~Lr~alAmGaD~ai~i~d~- 89 (249) -.++.++.||+.|.+|..+ .+.+++++.+-+. .. ...+++.+....+..+.+... T Consensus 15 D~s~~~~~al~~A~~lA~~-~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 93 (319) T 3olq_A 15 DPNQDDQPALRRAVYIVQR-NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQIDIKV 93 (319) T ss_dssp CTTCSCCHHHHHHHHHHHH-HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHH-HCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 6988899999999999998-099799999974687533344570156899999999999999999987775499558999 Q ss_pred -CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCC Q ss_conf -5478899999999986126864999961135888----6128999999857961 Q gi|254780368|r 90 -ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQ 139 (249) Q Consensus 90 -~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~ 139 (249) ...++. ..|...++..++|||++|.+..++- .|.+.-.+......|- T Consensus 94 ~~~~~~~---~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gS~~~~ll~~~~~PV 145 (319) T 3olq_A 94 IWHNRPY---EAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPV 145 (319) T ss_dssp EECSCHH---HHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCE T ss_pred EECCCHH---HHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHCCCCE T ss_conf 9868858---999999996598889741568763123304407899997379978 No 14 >2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Probab=92.45 E-value=0.46 Score=25.69 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=60.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------HHHHHHHHHHHCCC--CCEEEECCCCCC Q ss_conf 260136899999999855998528999971410-------------------15888887850777--623763365478 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------VEEVLKNSLAMGAD--RGILIESNETLE 93 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------~~~~Lr~alAmGaD--~ai~i~d~~~~D 93 (249) .++..+.|++.|.++... .+++++++++=++. +.+.|.+....... .-.++. .+ + T Consensus 11 ~s~~s~~al~~a~~la~~-~~~~i~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~g-~ 86 (137) T 2z08_A 11 GSEHARRAAEVAKAEAEA-HGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLL--EG-V 86 (137) T ss_dssp SSHHHHHHHHHHHHHHHH-HTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGEEEE--ES-S T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CC-C T ss_conf 998999999999999998-3998999998425664467510689999999999999999998569970799998--26-6 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE Q ss_conf 89999999998612686499996113588----861289999998579613 Q gi|254780368|r 94 PLSIAKILREIVKKENPIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA 140 (249) Q Consensus 94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v 140 (249) .+..|-..++..++|||++|.+.-.+ -.|.+...+......|-+ T Consensus 87 ---~~~~I~~~a~~~~~dliV~G~~~~s~~~~~~~Gs~~~~vl~~~~~pVl 134 (137) T 2z08_A 87 ---PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVL 134 (137) T ss_dssp ---HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEE T ss_pred ---HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEE T ss_conf ---489899876635688899945899876555037399999970699899 No 15 >3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Probab=91.22 E-value=0.77 Score=24.22 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=57.0 Q ss_pred CEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCC---------------------HHHHHHHHHHHHCCCCCEEEECC- Q ss_conf 73326013689999999985599852899997141---------------------01588888785077762376336- Q gi|254780368|r 32 KISMNPFDEIALEESLQLREKGIATEVIVVSIGSC---------------------KVEEVLKNSLAMGADRGILIESN- 89 (249) Q Consensus 32 ~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~---------------------~~~~~Lr~alAmGaD~ai~i~d~- 89 (249) +.-.++...+|++.|..|..+ .+.+++++.+-+. .+++.|.+...+-....+.+.-. T Consensus 28 p~D~S~~s~~al~~A~~la~~-~~~~i~llhvi~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~ 106 (294) T 3loq_A 28 PTDLSENSFKVLEYLGDFKKV-GVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIK 106 (294) T ss_dssp ECCSCTGGGGGGGGHHHHHHT-TCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECS T ss_pred EECCCHHHHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 968998999999999999987-6998999999888654444454566889999999999999999865543498569999 Q ss_pred --CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCEEHHHHHHHHHCCCCE Q ss_conf --547889999999998612686499996113588----861289999998579613 Q gi|254780368|r 90 --ETLEPLSIAKILREIVKKENPIIVIAGKQTTDN----ESNQTGQMLAALMRWPQA 140 (249) Q Consensus 90 --~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~----~~g~v~~~lA~~Lg~p~v 140 (249) ...++... |.+. ..++|||++|.+.... -.|.+.-.+....+.|.+ T Consensus 107 ~~~~G~~~~~---i~~~--~~~~DLIVmG~~g~~~~~~~~~GS~~~~vl~~~~~Pvl 158 (294) T 3loq_A 107 PFPAGDPVVE---IIKA--SENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVY 158 (294) T ss_dssp SCCEECHHHH---HHHH--HTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEE T ss_pred EEECCCHHHH---HHHH--HHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEE T ss_conf 9844988999---9999--74699999877788985103369814778873789779 No 16 >1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Probab=91.15 E-value=0.37 Score=26.30 Aligned_cols=101 Identities=22% Similarity=0.195 Sum_probs=60.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-----------------------HHHHHHHHH------------HHC Q ss_conf 260136899999999855998528999971410-----------------------158888878------------507 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-----------------------VEEVLKNSL------------AMG 79 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-----------------------~~~~Lr~al------------AmG 79 (249) .++..+.|++.|..+..+ .+.+++++++=+.. ....+++.+ ..- T Consensus 14 ~S~~s~~al~~a~~~A~~-~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 92 (162) T 1mjh_A 14 FSETAEIALKHVKAFKTL-KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162) T ss_dssp SCHHHHHHHHHHHHTCCS-SCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998999999999999874-4996999998425655544332222453322201778899999999999999999999988 Q ss_pred CCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE Q ss_conf 7762376336--5478899999999986126864999961135888----61289999998579613 Q gi|254780368|r 80 ADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA 140 (249) Q Consensus 80 aD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v 140 (249) -+..+.+... .| + .+..|.+++++.++|||++|.+...+- -|.+.-.+......|-+ T Consensus 93 ~~~~v~~~~~~~~G-~---~~~~I~~~a~~~~~DlIVvG~~~~~~~~~~~~GS~s~~l~~~a~~PVl 155 (162) T 1mjh_A 93 EDVGFKVKDIIVVG-I---PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVL 155 (162) T ss_dssp HHTTCEEEEEEEEE-C---HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEE T ss_pred HHCCCEEEEEEEEC-C---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCEE T ss_conf 76597699999936-7---899999873356589899847899865546107499999960899999 No 17 >1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Probab=89.60 E-value=0.29 Score=26.91 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=47.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH------------------HHHHHHHHHHCCCCC-----EEEECCCC Q ss_conf 2601368999999998559985289999714101------------------588888785077762-----37633654 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKV------------------EEVLKNSLAMGADRG-----ILIESNET 91 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~------------------~~~Lr~alAmGaD~a-----i~i~d~~~ 91 (249) -++..+.|++.|.++..+ .+++++++++=+... .+.+++.++-..++. ..+. ..+ T Consensus 11 ~s~~s~~al~~A~~la~~-~~a~l~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (141) T 1jmv_A 11 LSEESPILLKKAVGIAKR-HDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLS-GSG 88 (141) T ss_dssp CSTTHHHHHHHHHHHHHH-HTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEE-EEE T ss_pred CCHHHHHHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EEC T ss_conf 998999999999999987-499489999984103332233455579999999999999999999871776289999-606 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 7889999999998612686499996113 Q gi|254780368|r 92 LEPLSIAKILREIVKKENPIIVIAGKQT 119 (249) Q Consensus 92 ~D~~~~A~~La~~i~~~~~DLIl~G~~S 119 (249) ..+..|...+++.++|||+.|.+. T Consensus 89 ----~~~~~i~~~~~~~~~dliVvG~~~ 112 (141) T 1jmv_A 89 ----DLGQVLSDAIEQYDVDLLVTGHHQ 112 (141) T ss_dssp ----CHHHHHHHHHHHTTCCEEEEEECC T ss_pred ----CHHHHHHHHHHHCCCCEEEEECCC T ss_conf ----747889999872788889993289 No 18 >2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3} Probab=89.56 E-value=0.47 Score=25.62 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=59.1 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH----------------------HHHHH--------HHHHHH----- Q ss_conf 3260136899999999855998528999971410----------------------15888--------887850----- Q gi|254780368|r 34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCK----------------------VEEVL--------KNSLAM----- 78 (249) Q Consensus 34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~----------------------~~~~L--------r~alAm----- 78 (249) -.++..++|++.|+++... .+.+++++.+=++. ..+.+ ++.... T Consensus 13 D~S~~s~~a~~~a~~la~~-~~a~l~llhVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (170) T 2dum_A 13 DFSEGAYRAVEVFEKRNKM-EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAF 91 (170) T ss_dssp CSSHHHHHHHHHHHHHCCS-CCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 4998999999999999876-399799999963753233345433345410233799999999999999999999888757 Q ss_pred -CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCCCE Q ss_conf -777623763365478899999999986126864999961135888----61289999998579613 Q gi|254780368|r 79 -GADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWPQA 140 (249) Q Consensus 79 -GaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p~v 140 (249) +.+--+++. .| ++ +..|.+.+++.++|||++|.+.-..- -|.+...+......|.+ T Consensus 92 ~~~~v~~~i~--~G-~~---~~~I~~~a~~~~~DliVmG~~g~~~~~~~l~GS~~~~vl~~~~~pVL 152 (170) T 2dum_A 92 RAKNVRTIIR--FG-IP---WDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVL 152 (170) T ss_dssp TCSEEEEEEE--EE-CH---HHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEE T ss_pred CCCCEEEEEE--EC-CH---HHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHCCCCEE T ss_conf 9975799998--26-67---88520120256567899805899966445037599999970999999 No 19 >3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Probab=87.17 E-value=1.5 Score=22.33 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=57.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-------------------HHHHHHH----HHHHCCCCCEEEECCCCC Q ss_conf 60136899999999855998528999971410-------------------1588888----785077762376336547 Q gi|254780368|r 36 NPFDEIALEESLQLREKGIATEVIVVSIGSCK-------------------VEEVLKN----SLAMGADRGILIESNETL 92 (249) Q Consensus 36 n~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-------------------~~~~Lr~----alAmGaD~ai~i~d~~~~ 92 (249) +++...|++.|+++..+ .+.+++++.+=+.. .++.++. +...|......+....+ T Consensus 27 s~~s~~al~~A~~lA~~-~~a~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g- 104 (156) T 3fg9_A 27 NTSSERAFRYATTLAHD-YDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGG- 104 (156) T ss_dssp CHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECS- T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC- T ss_conf 99999999999999876-3888999986314322530113877999999999999999999887606764048998427- Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC---EEHHHHHHHHHCCC Q ss_conf 88999999999861268649999611358886---12899999985796 Q gi|254780368|r 93 EPLSIAKILREIVKKENPIIVIAGKQTTDNES---NQTGQMLAALMRWP 138 (249) Q Consensus 93 D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~---g~v~~~lA~~Lg~p 138 (249) ++.. .++..+++..++|||++|.+...+-. |.+...+......| T Consensus 105 ~~~~--~il~~~a~~~~~DLiV~G~~~~~~~~~~lGs~~~~v~~~a~~p 151 (156) T 3fg9_A 105 DVDD--VILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPIS 151 (156) T ss_dssp CHHH--HHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSE T ss_pred CCHH--HHHHCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 8237--5410237772998999817899860000375999999619999 No 20 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=87.07 E-value=1.5 Score=22.30 Aligned_cols=134 Identities=18% Similarity=0.165 Sum_probs=81.6 Q ss_pred EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE-------------ECCCHH Q ss_conf 986030388760598078881632487733260136899999---9998559985289999-------------714101 Q gi|254780368|r 5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS-------------IGSCKV 68 (249) Q Consensus 5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls-------------vG~~~~ 68 (249) +.+++-||-+..+++...-.+-+-=-+...-+|-+++-+|.- --+|+. +..+||++. -|+..+ T Consensus 59 ~~~~~FpDGE~~v~i~e~Vrg~dV~iiqs~~~~~nd~lmELll~i~Alr~~-gA~~ItlViPYl~YsRQDr~~~~~~i~a 137 (379) T 2ji4_A 59 VQVYQEPNRETRVQIQESVRGKDVFIIQTVSKDVNTTIMELLIMVYACKTS-CAKSIIGVIPYFPYSKQCKMRKRGSIVS 137 (379) T ss_dssp EEEEECTTSCEEEEECSCCTTCEEEEECCCCSCHHHHHHHHHHHHHHHHHT-TCSEEEEECSSCSSCCC-------CCHH T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-HCCEEEEEECCCCCCCCCCCCCCCCCHH T ss_conf 388987999789987987689838999689998158999999999999874-0564799933553340540003564068 Q ss_pred HHHHHHHHHHCCCCCEEEECC----CC-C----CHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCEEHHHHHHHHHC Q ss_conf 588888785077762376336----54-7----88999999999861268---649999611358886128999999857 Q gi|254780368|r 69 EEVLKNSLAMGADRGILIESN----ET-L----EPLSIAKILREIVKKEN---PIIVIAGKQTTDNESNQTGQMLAALMR 136 (249) Q Consensus 69 ~~~Lr~alAmGaD~ai~i~d~----~~-~----D~~~~A~~La~~i~~~~---~DLIl~G~~S~D~~~g~v~~~lA~~Lg 136 (249) ....+...++|+|+.+.+.-. .+ + +.......++.++++.. -+.|+. |.|.++..-.-.+|+.|+ T Consensus 138 ~~va~~L~~~gvd~vitvDlH~~~i~~ff~~p~~~l~~~~~~~~~~~~~~~~~~~~VvV---sPD~Ga~kRa~~~a~~L~ 214 (379) T 2ji4_A 138 KLLASMMCKAGLTHLITMDLHQKEIQGFFNIPVDNLRASPFLLQYIQEEIPDYRNAVIV---AKSPASAKRAQSFAERLR 214 (379) T ss_dssp HHHHHHHHHTTCCEEEEESCSSGGGGGGSSSCEEEECCHHHHHHHHHHHSTTGGGEEEE---ESSGGGHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE---CCCCCHHHHHHHHHHHHC T ss_conf 89987887528763224532767763277899775323076899999851565676464---389778999999999859 Q ss_pred CCCEEE Q ss_conf 961332 Q gi|254780368|r 137 WPQATF 142 (249) Q Consensus 137 ~p~vt~ 142 (249) .|+... T Consensus 215 ~~~~~~ 220 (379) T 2ji4_A 215 LGIAVI 220 (379) T ss_dssp CEEEEE T ss_pred CCEEEE T ss_conf 996899 No 21 >3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Probab=84.96 E-value=1.9 Score=21.63 Aligned_cols=90 Identities=14% Similarity=0.017 Sum_probs=50.8 Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH-----------------------HHHHHHHHHHCCCCCEEEE--CCCC Q ss_conf 01368999999998559985289999714101-----------------------5888887850777623763--3654 Q gi|254780368|r 37 PFDEIALEESLQLREKGIATEVIVVSIGSCKV-----------------------EEVLKNSLAMGADRGILIE--SNET 91 (249) Q Consensus 37 ~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~-----------------------~~~Lr~alAmGaD~ai~i~--d~~~ 91 (249) .+-+.|++.|.+|... .+.++.++.+-+... .+.+++....-......+. ...| T Consensus 14 ~~s~~al~~A~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 92 (143) T 3fdx_A 14 EFTERIISHVESEARI-DDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEG 92 (143) T ss_dssp SCCTTHHHHHHHHHHH-HTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEES T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 8999999999999987-599899999526754444433342101079999999999999999987057995599999628 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH Q ss_conf 7889999999998612686499996113588861289999 Q gi|254780368|r 92 LEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML 131 (249) Q Consensus 92 ~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l 131 (249) + .+..|...+++.++|||++|.+.........|.-. T Consensus 93 -~---~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~GS~~ 128 (143) T 3fdx_A 93 -S---PKDKILALAKSLPADLVIIASHRPDITTYLLGSNA 128 (143) T ss_dssp -C---HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHH T ss_pred -C---HHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCHH T ss_conf -8---78999999987345458973578887766608599 No 22 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=84.17 E-value=2.1 Score=21.40 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=80.7 Q ss_pred EEEEEECCCCCCEEECCCCC--EEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE--ECC-----------C Q ss_conf 98603038876059807888--1632487733260136899999---9998559985289999--714-----------1 Q gi|254780368|r 5 VPIKGVINYNTKVRIKNDYS--GIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS--IGS-----------C 66 (249) Q Consensus 5 V~vK~VpD~~~~i~i~~~~~--~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls--vG~-----------~ 66 (249) +.+++-||-+..+++..+-. .+- -+...-+|-|++-+|.- --+|+. +...|+++. ++- + T Consensus 36 ~~~~~FpDGE~~v~i~~~vrg~~V~--ivqs~~~~~nd~l~eLll~~~a~r~~-gA~~I~~ViPYl~YsRQDr~~~~ge~ 112 (317) T 1dku_A 36 CSVTRFSDGEVQINIEESIRGCDCY--IIQSTSDPVNEHIMELLIMVDALKRA-SAKTINIVIPYYGYARQDRKARSREP 112 (317) T ss_dssp EEEEECTTSCEEEEECSCCTTCEEE--EECCCCSSHHHHHHHHHHHHHHHHHT-TCSEEEEEESSCTTTTCCSCSSTTCC T ss_pred EEEEECCCCCEEEEECCCCCCCEEE--EEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCEECHHCCCCCC T ss_conf 3788889997799878877898699--99678999427799999999999868-99559999366643320000279987 Q ss_pred HHHHHHHHHH-HHCCCCCEEEECC----CC-----CCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCEEHHHHHHHHH Q ss_conf 0158888878-5077762376336----54-----788999999999861268-64999961135888612899999985 Q gi|254780368|r 67 KVEEVLKNSL-AMGADRGILIESN----ET-----LEPLSIAKILREIVKKEN-PIIVIAGKQTTDNESNQTGQMLAALM 135 (249) Q Consensus 67 ~~~~~Lr~al-AmGaD~ai~i~d~----~~-----~D~~~~A~~La~~i~~~~-~DLIl~G~~S~D~~~g~v~~~lA~~L 135 (249) -+...+=+.| ++|+|+.+.+.-. .+ .+.......++++++..+ .+.++. |.|.++.+-.-.+|+.| T Consensus 113 isak~va~lL~~~g~d~vit~DlH~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~vvV---aPD~Ga~~ra~~~A~~l 189 (317) T 1dku_A 113 ITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKNLEDIVIV---SPDHGGVTRARKLADRL 189 (317) T ss_dssp CHHHHHHHHHHHHTCCEEEEESCSSGGGGGGCSSCEEEECSHHHHHHHHHTTTCCSEEEE---ESSGGGHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEE---CCCCCHHHHHHHHHHHC T ss_conf 059999988762499779996368487750435774100021467777764075555477---89943799999999982 Q ss_pred CCCCEE Q ss_conf 796133 Q gi|254780368|r 136 RWPQAT 141 (249) Q Consensus 136 g~p~vt 141 (249) |.|+.. T Consensus 190 ~~~~~~ 195 (317) T 1dku_A 190 KAPIAI 195 (317) T ss_dssp TCCEEE T ss_pred CCCEEE T ss_conf 999899 No 23 >2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718} Probab=82.46 E-value=2.5 Score=20.97 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=54.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH-----------------HHHHH--------HH-HHHHCCCCCEEEEC Q ss_conf 260136899999999855998528999971410-----------------15888--------88-78507776237633 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK-----------------VEEVL--------KN-SLAMGADRGILIES 88 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~-----------------~~~~L--------r~-alAmGaD~ai~i~d 88 (249) .++.+..||+.|+.|... .+.+++++++=+.. ..+.+ .+ +-..|......+. T Consensus 15 ~s~~s~~al~~A~~lA~~-~~a~l~~lhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 92 (150) T 2pfs_A 15 FSSEDSQVVQKVRNLASQ-IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWL- 92 (150) T ss_dssp CCTTHHHHHHHHHHHHHH-HTCEEEEEEEEC----------CCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEE- T ss_pred CCHHHHHHHHHHHHHHHH-HCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE- T ss_conf 998999999999999998-199788668985144554444445542379999999999999999989854997527999- Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC---EEHHHHHHHHHCCC Q ss_conf 654788999999999861268649999611358886---12899999985796 Q gi|254780368|r 89 NETLEPLSIAKILREIVKKENPIIVIAGKQTTDNES---NQTGQMLAALMRWP 138 (249) Q Consensus 89 ~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~---g~v~~~lA~~Lg~p 138 (249) ..+ + .+..|...+++.++|||++|.+.-.+-. |.+.-.+......| T Consensus 93 ~~g-~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~lGS~~~~v~~~s~~p 141 (150) T 2pfs_A 93 VWG-E---PREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCD 141 (150) T ss_dssp EES-C---HHHHHHHHHHHTTCSEEEEEEC----------CHHHHHHHHCSSE T ss_pred EEC-C---HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 818-8---899999999863876798727999965265177899998536989 No 24 >3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Probab=80.67 E-value=2.8 Score=20.57 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=54.0 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH--------------------HHHHHHHHHH----CCCC---CEEE Q ss_conf 32601368999999998559985289999714101--------------------5888887850----7776---2376 Q gi|254780368|r 34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKV--------------------EEVLKNSLAM----GADR---GILI 86 (249) Q Consensus 34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~--------------------~~~Lr~alAm----GaD~---ai~i 86 (249) --++.-++|+|.|++|... .|.+++++.+=++.. +..+++++.. +... .+.. T Consensus 27 DgS~~s~~Al~~Aa~lA~~-~ga~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (309) T 3cis_A 27 DDSPAAQVAVRWAARDAEL-RKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHS 105 (309) T ss_dssp CSSHHHHHHHHHHHHHHHH-HTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCSCEEE T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 9998899999999999998-699799999985654344455676456799999999999999999998623248963999 Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC----CCCEEHHHHHHHHHCCCCE Q ss_conf 33654788999999999861268649999611358----8861289999998579613 Q gi|254780368|r 87 ESNETLEPLSIAKILREIVKKENPIIVIAGKQTTD----NESNQTGQMLAALMRWPQA 140 (249) Q Consensus 87 ~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D----~~~g~v~~~lA~~Lg~p~v 140 (249) .-..+ ++. ..|....+ ++|||++|.+... .-.|.+.-.+...-..|.+ T Consensus 106 ~v~~G-~~~---~~i~~~A~--~adlIVmG~~g~~~~~~~llGS~~~~vl~~~~~PVl 157 (309) T 3cis_A 106 EIVPA-AAV---PTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVV 157 (309) T ss_dssp EEESS-CHH---HHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEE T ss_pred EEEEC-CHH---HHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCEE T ss_conf 99856-989---99999855--899899925778753344236732888874568737 No 25 >2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Probab=79.40 E-value=3.1 Score=20.31 Aligned_cols=77 Identities=12% Similarity=0.146 Sum_probs=45.2 Q ss_pred HHHHHHCCCCCCEEEEEECCC--------HHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 999985599852899997141--------01588888785077762376336--54788999999999861268649999 Q gi|254780368|r 46 SLQLREKGIATEVIVVSIGSC--------KVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIA 115 (249) Q Consensus 46 Al~lke~~~g~~V~~lsvG~~--------~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~ 115 (249) -.++++++....++++|-|.. +.++..+-+-.+|++.-+.+.-. ...+.....+.|...|++..||+||+ T Consensus 24 lak~~~~G~~V~vv~lT~G~~~~~~~~~~R~~E~~~A~~~LGv~~~~~l~~~D~~~~~~~e~~~~l~~~i~~~~Pd~V~t 103 (242) T 2ixd_A 24 IAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGVKTRLNLAMPDRGLYMKEEYIREIVKVIRTYKPKLVFA 103 (242) T ss_dssp HHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTCCEEEEEEECTTCCCCCHHHHHHHHHHHHHHCCSEEEE T ss_pred HHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEC T ss_conf 99999779919999973897786641677999999999863975033167885444669999999999975405447874 Q ss_pred EECCCCCC Q ss_conf 61135888 Q gi|254780368|r 116 GKQTTDNE 123 (249) Q Consensus 116 G~~S~D~~ 123 (249) -. ..|.. T Consensus 104 ~~-~~D~h 110 (242) T 2ixd_A 104 PY-YEDRH 110 (242) T ss_dssp EC-SCSSS T ss_pred CC-CCCCC T ss_conf 68-88878 No 26 >1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 Probab=73.84 E-value=4.4 Score=19.34 Aligned_cols=96 Identities=25% Similarity=0.198 Sum_probs=66.3 Q ss_pred HHHHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECCC------------------C--C-----CHHH Q ss_conf 9999985599852899997--1-41015888887850777623763365------------------4--7-----8899 Q gi|254780368|r 45 ESLQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESNE------------------T--L-----EPLS 96 (249) Q Consensus 45 ~Al~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~~------------------~--~-----D~~~ 96 (249) .+..|+|+ |.+|+++++ | +.+.+..-++|+..||.+.+.+..++ + . .-.. T Consensus 30 ~l~~L~e~--g~eVi~~~~d~Gq~ed~~~~~~kA~~~GA~~~~v~D~r~ef~~~~i~p~I~ana~ye~~Y~l~tslaRpl 107 (421) T 1vl2_A 30 ILKWLCEK--GFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPL 107 (421) T ss_dssp HHHHHHHT--TCEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHHHHHH T ss_pred HHHHHHHC--CCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH T ss_conf 99999877--9979999997997677899999999849968999860999999999999966887678653421111589 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE Q ss_conf 999999986126864999961135888612899999985796133244 Q gi|254780368|r 97 IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS 144 (249) Q Consensus 97 ~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~ 144 (249) +|+.+..+.++.+.|.|.-| ++-.++-||-.-++-..=.|.+..+. T Consensus 108 ia~~~v~~A~~~ga~~iaHG--~TGkGNDQvRFe~~~~aL~p~~~iia 153 (421) T 1vl2_A 108 IAKRQVEIAEKEGAQYVAHG--ATGKGNDQVRFELTYAALNPNLKVIS 153 (421) T ss_dssp HHHHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTSEEEC T ss_pred HHHHHHHHHHHHCCCEEECC--CCCCCCCCCHHHHHHHHHCCCCCCCC T ss_conf 99999999997087488336--52477754107777987289763158 No 27 >1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Probab=72.96 E-value=4.6 Score=19.20 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=44.2 Q ss_pred HHHHHCCCCCCEEEEEECCC--------HHHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 99985599852899997141--------01588888785077762376336--547889999999998612686499996 Q gi|254780368|r 47 LQLREKGIATEVIVVSIGSC--------KVEEVLKNSLAMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAG 116 (249) Q Consensus 47 l~lke~~~g~~V~~lsvG~~--------~~~~~Lr~alAmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G 116 (249) .++++++....|..+|-|.. +.++..+-+-.+|++....+.-+ .-.+.......|.+.+++..||+|++= T Consensus 23 ak~~~~G~~V~vv~~T~G~~g~~~~~~~R~~E~~~a~~~lG~~~~~~L~~~d~~l~~~~~~~~~l~~~i~~~~PdiV~t~ 102 (227) T 1uan_A 23 ARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGLDFRGNLGFPDGGLADVPEQRLKLAQALRRLRPRVVFAP 102 (227) T ss_dssp HHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTCSEEEEEEECTTCCCCCHHHHHHHHHHHHHHCEEEEEEE T ss_pred HHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEECC T ss_conf 99998699099999738977889889999999987776415440125655786544688899899999984399689807 Q ss_pred ECCCCCC Q ss_conf 1135888 Q gi|254780368|r 117 KQTTDNE 123 (249) Q Consensus 117 ~~S~D~~ 123 (249) ...|.. T Consensus 103 -~~~d~H 108 (227) T 1uan_A 103 -LEADRH 108 (227) T ss_dssp -CSCCSS T ss_pred -CCCCCC T ss_conf -988887 No 28 >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Probab=70.44 E-value=4.9 Score=19.03 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=22.4 Q ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHCCCC Q ss_conf 8649999611358886128999999857961 Q gi|254780368|r 109 NPIIVIAGKQTTDNESNQTGQMLAALMRWPQ 139 (249) Q Consensus 109 ~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~ 139 (249) ..|+|++|..|.|..+-.+..++...||++. T Consensus 94 ~Id~li~aT~s~~~~~ps~a~~v~~~Lg~~~ 124 (478) T 2p8u_A 94 CIGRLEVGTETIIDKSKSVKTNLMQLFEESG 124 (478) T ss_dssp GEEEEEEECSCCSCSSSCHHHHHGGGTTTTT T ss_pred HCCEEEEEECCCCCCCCCHHHHHHHHHCCCC T ss_conf 9999999916888778758999998723567 No 29 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Probab=70.26 E-value=5.3 Score=18.82 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=53.2 Q ss_pred CCEEEECCC--CCCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE Q ss_conf 623763365--4788---99999999986126864999961135888612899999985796133244334328659999 Q gi|254780368|r 82 RGILIESNE--TLEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT 156 (249) Q Consensus 82 ~ai~i~d~~--~~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~ 156 (249) ++|...|=. -.|| ..+.+.+++.++..++|.|+| - +...=.+++.+|..||.|.+---..-..-+...... T Consensus 31 ~Gi~f~Di~~il~dP~~~~~v~~~la~~~~~~~~D~Iv~-~---e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~ 106 (190) T 2dy0_A 31 PGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVG-T---EARGFLFGAPVALGLGVGFVPVRKPGKLPRETISET 106 (190) T ss_dssp TTCCEEETHHHHHCHHHHHHHHHHHHHHHTTTTCCEEEE-E---TTHHHHHHHHHHHHHTCEEEEEBSTTCCCSCEEEEE T ss_pred CCCEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE-C---CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEE T ss_conf 995799698276699999999999999840689999997-3---534312068999975998698755798888606899 Q ss_pred EECCCCEEEEEEC Q ss_conf 8358967999963 Q gi|254780368|r 157 REVGHGTMTMETP 169 (249) Q Consensus 157 r~~e~g~e~v~~~ 169 (249) ...+.+..+.++. T Consensus 107 ~~~~~~~~~~~i~ 119 (190) T 2dy0_A 107 YDLEYGTDQLEIH 119 (190) T ss_dssp EEETTEEEEEEEE T ss_pred EEEECCEEEEEEE T ss_conf 9886037888986 No 30 >2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} Probab=69.64 E-value=5.5 Score=18.73 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=47.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC Q ss_conf 26013689999999985599852899997141015888887850777623763365478899999999986126 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKE 108 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~ 108 (249) +|-.|.+.+|..-+||+......|.++|. ....+..++|+..||+. |+.. ..++-....+|..+.+.. T Consensus 58 ~~mP~~~G~e~l~~ir~~~p~~~iivlT~--~~~~~~~~~a~~~Ga~g-yl~K---~~~~~~L~~aI~~v~~g~ 125 (154) T 2qsj_A 58 VNLPDAEAIDGLVRLKRFDPSNAVALISG--ETDHELIRAALEAGADG-FIPK---SADPQVLIHAVSLILEGE 125 (154) T ss_dssp C------CHHHHHHHHHHCTTSEEEEC-------CHHHHHHHHTTCCB-BCCT---TSCHHHHHHHHHHHHTTC T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEE--ECCHHHHHHHHHCCCCE-EEEC---CCCHHHHHHHHHHHHCCC T ss_conf 88899888999999998788997999980--28999999999859988-9979---999999999999998799 No 31 >2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Probab=67.69 E-value=6 Score=18.48 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=50.3 Q ss_pred HHHHHHHHHHHHHCCCCC--CEEEEEECCCH---------------------------HHHHHHHHHHHCCCCCEEEECC Q ss_conf 368999999998559985--28999971410---------------------------1588888785077762376336 Q gi|254780368|r 39 DEIALEESLQLREKGIAT--EVIVVSIGSCK---------------------------VEEVLKNSLAMGADRGILIESN 89 (249) Q Consensus 39 D~~AlE~Al~lke~~~g~--~V~~lsvG~~~---------------------------~~~~Lr~alAmGaD~ai~i~d~ 89 (249) -..|++-|++..-+.++. .+.++..-+.. +.+.|+.+.....+..+.+... T Consensus 27 S~~Al~wAl~~~~~~~~~~~~l~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~ 106 (175) T 2gm3_A 27 CKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW 106 (175) T ss_dssp HHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHHHHHHHHHHHHHHHHTCEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999986699825999999446665333444544578889999999999999999999999999749826889 Q ss_pred --CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCC Q ss_conf --5478899999999986126864999961135888----612899999985796 Q gi|254780368|r 90 --ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWP 138 (249) Q Consensus 90 --~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p 138 (249) .+ ++ +..|.+++++.++|||++|.+...+- .|.+.-.+...-..| T Consensus 107 ~~~G-~~---~~~I~~~a~~~~~dlIVmG~~g~~~~~~~~lGSvs~~v~~~a~cP 157 (175) T 2gm3_A 107 IKTG-DP---KDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECP 157 (175) T ss_dssp EEES-CH---HHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSC T ss_pred EEEC-CH---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 8534-64---277899999728988996289998666662287999998177988 No 32 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=66.45 E-value=6.4 Score=18.32 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=81.6 Q ss_pred EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHH---HHHHHCCCCCCEEEEE--ECC------------CH Q ss_conf 986030388760598078881632487733260136899999---9998559985289999--714------------10 Q gi|254780368|r 5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEES---LQLREKGIATEVIVVS--IGS------------CK 67 (249) Q Consensus 5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~A---l~lke~~~g~~V~~ls--vG~------------~~ 67 (249) +.+++-||-+..+++..+-.+-+-=-+....+|-|++-+|.- --+|+. +..+|+++. ++. +- T Consensus 34 ~~~~~FpDGE~~vri~~~vrg~dV~iiqs~~~~~nd~lmeLll~~~a~r~~-gA~~itlViPYl~YsRQDr~~~~g~~~i 112 (319) T 3dah_A 34 AMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRA-SAGRITAAIPYFGYARQDRRPRSARVAI 112 (319) T ss_dssp EEEEECTTSCEEEEECSCCBTCEEEEECCCCSSHHHHHHHHHHHHHHHHHT-TBSEEEEEESSCTTTTCCSCCTTCCCCC T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHCCCCCCCCCCH T ss_conf 488988999788877897679808999379968637899999999999874-9772588714662322032346774306 Q ss_pred HHHHHHHHH-HHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCEEHHHHHHHHHC Q ss_conf 158888878-50777623763365----4-----788999999999861268-649999611358886128999999857 Q gi|254780368|r 68 VEEVLKNSL-AMGADRGILIESNE----T-----LEPLSIAKILREIVKKEN-PIIVIAGKQTTDNESNQTGQMLAALMR 136 (249) Q Consensus 68 ~~~~Lr~al-AmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~-~DLIl~G~~S~D~~~g~v~~~lA~~Lg 136 (249) +...+-+.| ++|+|+.+.++-.. + .+.+.....++.++.+.+ .+.++. |.|.++-.-.-.+|..|| T Consensus 113 sa~~va~ll~~~g~d~vitvDlH~~~i~~~f~~pv~~l~~~~~~~~~~~~~~~~~~vvv---sPD~Ga~kra~~~A~~l~ 189 (319) T 3dah_A 113 SAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQNYPDLLVV---SPDVGGVVRARALAKQLN 189 (319) T ss_dssp HHHHHHHHHHHHTCCEEEEESCSCGGGGGGCSSCEEEECCHHHHHHHHHTTCCTTEEEE---CCSSTTHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHCCCCCEEE---CCCCCHHHHHHHHHHHCC T ss_conf 79999844400588559995778487841669970333125788899997479873898---568856999999898649 Q ss_pred CCCEEEEEEEEECCCE Q ss_conf 9613324433432865 Q gi|254780368|r 137 WPQATFVSNIKIIDNH 152 (249) Q Consensus 137 ~p~vt~v~~i~~~~~~ 152 (249) .|++. ..+-...++. T Consensus 190 ~~~~~-~~K~R~~~~~ 204 (319) T 3dah_A 190 CDLAI-IDKRRPKANV 204 (319) T ss_dssp CEEEC----------- T ss_pred CCEEE-EEEEECCCCC T ss_conf 98899-9999189993 No 33 >2v4w_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.7A {Homo sapiens} PDB: 2wya_A* Probab=66.41 E-value=5.5 Score=18.75 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=10.4 Q ss_pred CEEEEEECCCCCCCEEHHHHHHHHHCC Q ss_conf 499996113588861289999998579 Q gi|254780368|r 111 IIVIAGKQTTDNESNQTGQMLAALMRW 137 (249) Q Consensus 111 DLIl~G~~S~D~~~g~v~~~lA~~Lg~ 137 (249) |+|++|..|.|..+-.+...+...||. T Consensus 77 d~Li~aT~s~~d~~ps~a~~v~~~Lg~ 103 (460) T 2v4w_A 77 GRLEVGTETIIDKSKAVKTVLMELFQD 103 (460) T ss_dssp EEEEEECSCCSCSSSCHHHHHGGGTGG T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCC T ss_conf 999999379887777779999998458 No 34 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=65.29 E-value=6.7 Score=18.18 Aligned_cols=87 Identities=15% Similarity=0.080 Sum_probs=52.6 Q ss_pred CHHH---HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCE-EEEEE Q ss_conf 8899---9999999861268649999611358886128999999857961332443343286599998358967-99996 Q gi|254780368|r 93 EPLS---IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGT-MTMET 168 (249) Q Consensus 93 D~~~---~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~-e~v~~ 168 (249) ||.. .+..+++-.+..++|+|++ - +...=-.+..+|..||.|++-.-..-...+..+......+.|. .++++ T Consensus 34 ~P~~~~~l~~~la~~~~~~~~d~Vvg-i---e~~Gi~lA~~lA~~Lg~p~v~~rk~~~~~~~~~~~~~~~~~~~~~~iei 109 (186) T 1l1q_A 34 TPAALDAVRKEVTAHYKDVPITKVVG-I---ESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEV 109 (186) T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEE-E---SGGGHHHHHHHHHHHTCEEEEEEETTSSCSSEEEEEEEETTEEEEEEEE T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEE-E---CCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEE T ss_conf 99999999999999706699979998-4---5544477899999819987877613788850599998615776607998 Q ss_pred CCCE------EEEEECCCCCC Q ss_conf 3988------99984355654 Q gi|254780368|r 169 PLPA------VITVDLNLNEP 183 (249) Q Consensus 169 ~lPa------visv~~~~n~P 183 (249) +.++ |+-|+.=+.+- T Consensus 110 ~~~~l~~G~rVLIVDDvl~TG 130 (186) T 1l1q_A 110 QKRQLGPHDVVLLHDDVLATG 130 (186) T ss_dssp EGGGCCTTCCEEEEEEEESSS T ss_pred ECCCCCCCCEEEEEEEHHHHC T ss_conf 712037899899995343316 No 35 >1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Probab=63.08 E-value=7.3 Score=17.92 Aligned_cols=67 Identities=10% Similarity=0.056 Sum_probs=46.4 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE--------------------------------HHHHHHHHHCC Q ss_conf 5478899999999986126864999961135888612--------------------------------89999998579 Q gi|254780368|r 90 ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ--------------------------------TGQMLAALMRW 137 (249) Q Consensus 90 ~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~--------------------------------v~~~lA~~Lg~ 137 (249) .-.||.-++++|++++...+.+=||.|.-|.|...|. |---+-..||| T Consensus 251 ~R~dPv~VsRv~SAmVNs~DD~GVL~G~Wsg~y~~Gt~P~~W~GSv~IL~q~~~~~~pVkYGQCWVFAgV~~TvlRcLGI 330 (731) T 1ex0_A 251 GRGNPIKVSRVGSAMVNAKDDEGVLVGSFDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFLRCLGI 330 (731) T ss_dssp GTTCHHHHHHHHHHHHBCSTTCSSEEECCSSCCTTSCCGGGCCBSHHHHHHHHHHTSCEEEECHHHHHHHHHHHHHHHTC T ss_pred HCCCCCEEHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 76994001223577635678884263676677778858544458399999998669962112035678777776622688 Q ss_pred CC--EEEEEEEEECCCEEEEE Q ss_conf 61--33244334328659999 Q gi|254780368|r 138 PQ--ATFVSNIKIIDNHAIVT 156 (249) Q Consensus 138 p~--vt~v~~i~~~~~~~~v~ 156 (249) |+ ||+-.+-.=.++.+++. T Consensus 331 P~R~VTNf~SAHDtd~nLtiD 351 (731) T 1ex0_A 331 PARIVTNYFSAHDNDANLQMD 351 (731) T ss_dssp CEEEEEEEEECCSCTTBCEEE T ss_pred CCEEECCCCCCCCCCCCCCEE T ss_conf 640133556445588873011 No 36 >1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.26.2.4 Probab=61.80 E-value=7.7 Score=17.77 Aligned_cols=99 Identities=12% Similarity=0.112 Sum_probs=54.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH---------------------HHHHHHHHHHHCCCCCE-EEEC--CC Q ss_conf 260136899999999855998528999971410---------------------15888887850777623-7633--65 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCK---------------------VEEVLKNSLAMGADRGI-LIES--NE 90 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~---------------------~~~~Lr~alAmGaD~ai-~i~d--~~ 90 (249) .++....|++.|+++..+ .+..++++.+-+.. .++.++.+.....+... .+.. .. T Consensus 26 ~S~~s~~a~~~a~~lA~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~ 104 (163) T 1tq8_A 26 GSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV 104 (163) T ss_dssp SSHHHHHHHHHHHHHHTT-TSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC T ss_pred CCHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 998999999999999854-8988999998224554444555551778999999999999999999997699719999982 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC----CEEHHHHHHHHHCCC Q ss_conf 478899999999986126864999961135888----612899999985796 Q gi|254780368|r 91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNE----SNQTGQMLAALMRWP 138 (249) Q Consensus 91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~----~g~v~~~lA~~Lg~p 138 (249) + ++ ...|...+++.++|||++|.+.-++- -|.+.-.|......| T Consensus 105 G-~~---~~~i~~~a~~~~~dliV~G~~~~~~l~~~~~Gs~~~~ll~~s~~P 152 (163) T 1tq8_A 105 G-AP---VDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVD 152 (163) T ss_dssp S-SH---HHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCE T ss_pred C-CH---HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCC T ss_conf 7-83---888999987425446754479998665574287999999708998 No 37 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=59.73 E-value=8.4 Score=17.54 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=77.7 Q ss_pred EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHH---HHHHCCCCCCEEEEEE-------------CCCHH Q ss_conf 9860303887605980788816324877332601368999999---9985599852899997-------------14101 Q gi|254780368|r 5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESL---QLREKGIATEVIVVSI-------------GSCKV 68 (249) Q Consensus 5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al---~lke~~~g~~V~~lsv-------------G~~~~ 68 (249) +.+++-||-+..+++..+-.+=+-=-+....+| +++-+|.-+ -+|+. +..+++++-= |.+-+ T Consensus 27 ~~~~~F~dGE~~v~i~~~vrg~~v~iv~s~~~~-nd~l~ell~~~~alr~~-ga~~itlViPYl~YaRQDR~~~~ge~is 104 (284) T 1u9y_A 27 VEYKRFPDNEIYVRIVDEINDDEAVIINTQKNQ-NDAIVETILLCDALRDE-GVKKITLVAPYLAYARQDKKFNPGEAIS 104 (284) T ss_dssp EEEEECTTCCEEEEECSCCCSSEEEEECCCSSH-HHHHHHHHHHHHHHHTT-TCCEEEEECSSCTTCSCSSCSSTTBCCH T ss_pred EEEEECCCCCEEEEECCCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCCCHH T ss_conf 488988999789973677789869999279983-36599999999999871-8873899952232010465458987358 Q ss_pred HHHHHHHHHHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCC Q ss_conf 5888887850777623763365----4-----788999999999861268649999611358886128999999857961 Q gi|254780368|r 69 EEVLKNSLAMGADRGILIESNE----T-----LEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQ 139 (249) Q Consensus 69 ~~~Lr~alAmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~ 139 (249) ...+-+.+++|+|+.+.+.-.. + .+-......++.++++...+.++. |.|.+...-.-.+|..||.|+ T Consensus 105 ak~~a~ll~~g~d~vvt~D~H~~~~~~~f~~~~~~l~~~~~l~~~~~~~~~~~vvv---sPD~g~~kra~~~a~~l~~~~ 181 (284) T 1u9y_A 105 IRALAKIYSNIVDKLITINPHETHIKDFFTIPFIYGDAVPKLAEYVKDKLNDPIVL---APDKGALEFAKTASKILNAEY 181 (284) T ss_dssp HHHHHHHHHHHCSEEEEESCSCGGGGGGCSSCEEEECCHHHHHHHHTTTCSSCEEE---ESSGGGHHHHHHHHHHHTCCE T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHHHCCCCE T ss_conf 99999998745684489837817875113687124423589999998653686898---479865789999998576632 Q ss_pred EE Q ss_conf 33 Q gi|254780368|r 140 AT 141 (249) Q Consensus 140 vt 141 (249) .- T Consensus 182 ~~ 183 (284) T 1u9y_A 182 DY 183 (284) T ss_dssp EE T ss_pred EE T ss_conf 34 No 38 >1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* Probab=58.92 E-value=8.7 Score=17.46 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=14.0 Q ss_pred CCEEEEEEECCCCEEEEEE----CCCEEEEEE Q ss_conf 8659999835896799996----398899984 Q gi|254780368|r 150 DNHAIVTREVGHGTMTMET----PLPAVITVD 177 (249) Q Consensus 150 ~~~~~v~r~~e~g~e~v~~----~lPavisv~ 177 (249) +..+.+++-++|-.-++.+ .+|.+.-.. T Consensus 174 ~~~~lvEefi~G~E~~v~v~~~~~~~~~~i~~ 205 (306) T 1iow_A 174 DEEVLIEKWLSGPEFTVAILGEEILPSIRIQP 205 (306) T ss_dssp CSEEEEEECCCCCEEEEEEETTEECCCEEEEC T ss_pred CHHHHHHHCCCCCEEEEEEECCCCCCEEEEEE T ss_conf 83566764567977999985576787699963 No 39 >3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Probab=57.37 E-value=9.2 Score=17.29 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=31.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 260136899999999855998528999971410158888878507776237633654788999999999861 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK 106 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~ 106 (249) ++-.+.+.+|.+-+|+.......|.++|.- ...+.+.+|+..||+ +|+.. +.++...-.+|..+++ T Consensus 69 l~mp~~~G~el~~~ir~~~~~~~vivlS~~--~~~~~~~~a~~~Ga~-~yl~K---p~~~~~L~~aI~~~~~ 134 (152) T 3eul_A 69 YRMPGMDGAQVAAAVRSYELPTRVLLISAH--DEPAIVYQALQQGAA-GFLLK---DSTRTEIVKAVLDCAK 134 (152) T ss_dssp TTCSSSCHHHHHHHHHHTTCSCEEEEEESC--CCHHHHHHHHHTTCS-EEEET---TCCHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHHHHCCCC-EEEEC---CCCHHHHHHHHHHHHC T ss_conf 899998999999999975899859999686--999999999986998-99979---9999999999999987 No 40 >3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Probab=57.30 E-value=5.9 Score=18.55 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.4 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCE Q ss_conf 99998612686499996113588861289999998579613 Q gi|254780368|r 100 ILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQA 140 (249) Q Consensus 100 ~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~v 140 (249) -++..+++..||+|+. -.|.++..-+++.|..+++|.+ T Consensus 86 ~~~~~~~~~kpD~vlv---~GDr~e~la~a~aa~~~~ipi~ 123 (375) T 3beo_A 86 GLDKVMKEAKPDIVLV---HGDTTTTFIASLAAFYNQIPVG 123 (375) T ss_dssp HHHHHHHHHCCSEEEE---ETTSHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHCCCCEEEE---ECCCCHHHHHHHHHHHCCCCEE T ss_conf 9999997479988999---4687247779999998198389 No 41 >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Probab=56.65 E-value=9.5 Score=17.21 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=5.3 Q ss_pred CCEEEEEECC Q ss_conf 6499996113 Q gi|254780368|r 110 PIIVIAGKQT 119 (249) Q Consensus 110 ~DLIl~G~~S 119 (249) .-||+++.-. T Consensus 132 ~aLVV~sd~~ 141 (396) T 1xpm_A 132 KVLVIATDTA 141 (396) T ss_dssp EEEEEEEEEE T ss_pred CEEEEEEEEE T ss_conf 5057665521 No 42 >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* Probab=55.16 E-value=10 Score=17.06 Aligned_cols=95 Identities=27% Similarity=0.343 Sum_probs=65.8 Q ss_pred HHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECC------------------CC-------CCHHHHH Q ss_conf 99985599852899997--1-4101588888785077762376336------------------54-------7889999 Q gi|254780368|r 47 LQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESN------------------ET-------LEPLSIA 98 (249) Q Consensus 47 l~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~------------------~~-------~D~~~~A 98 (249) ..|+|+ .|.+|+++++ | +.+.+..-++|+..||.+.+.+.-+ ++ ..-..+| T Consensus 18 ~wL~e~-~~~eVi~~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~i~ana~Ye~~Y~l~tslaRplia 96 (400) T 1kor_A 18 KWLKET-YRAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIA 96 (400) T ss_dssp HHHHHH-HTCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHH T ss_pred HHHHHC-CCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH T ss_conf 999740-5988999997088667669999999984998899975799999999999997386557876234541064799 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE Q ss_conf 9999986126864999961135888612899999985796133244 Q gi|254780368|r 99 KILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS 144 (249) Q Consensus 99 ~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~ 144 (249) +.+..++++.+.+.|--| |+-.++-||-.-++-..=-|.+..+. T Consensus 97 ~~~v~~A~~~ga~~iaHG--~TGkGNDQvRFe~~~~al~P~l~iia 140 (400) T 1kor_A 97 KHLVRIAEEEGAEAIAHG--ATGKGNDQVRFELTAYALKPDIKVIA 140 (400) T ss_dssp HHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTCEEEC T ss_pred HHHHHHHHHCCCEEEECC--CCCCCCCHHHHHHHHHHHCCCCEEEC T ss_conf 999999854497699437--77578723668889997599974850 No 43 >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Probab=53.36 E-value=11 Score=16.87 Aligned_cols=66 Identities=5% Similarity=-0.069 Sum_probs=34.5 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH--HHHHCCCCEEEEEE-EEECCCEEEEEEECCCCEEEE Q ss_conf 999999998612686499996113588861289999--99857961332443-343286599998358967999 Q gi|254780368|r 96 SIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML--AALMRWPQATFVSN-IKIIDNHAIVTREVGHGTMTM 166 (249) Q Consensus 96 ~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l--A~~Lg~p~vt~v~~-i~~~~~~~~v~r~~e~g~e~v 166 (249) ..|.-|+..+++.|++..+- |.+...+|-.+ |+++|+|++.-++. =+++++++++++...+-.++. T Consensus 358 e~a~~I~~~L~~~girV~~D-----dr~~~~iG~Kir~a~~~g~Py~~IiIG~kEle~~~VtVR~Rd~~~q~~~ 426 (471) T 3a32_A 358 DLASSIAKGLLDKGFRVAVK-----GSSKTGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESMKRR 426 (471) T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEETTTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTTEEE T ss_pred HHHHHHHHHHHHCCCEEEEE-----CCCCCCCCHHHHHHHHCCCCEEEEEECHHHHHCCEEEEEECCCCCCCCE T ss_conf 99999999999789989998-----8999864689999985799809999834677479899997888542515 No 44 >2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, structural genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} Probab=52.41 E-value=11 Score=16.78 Aligned_cols=92 Identities=27% Similarity=0.325 Sum_probs=63.6 Q ss_pred HHHHHCCCCCCEEEEEE--C-CCHHHHHHHHHHHHCCCCCEEEECC------------------CC-------CCHHHHH Q ss_conf 99985599852899997--1-4101588888785077762376336------------------54-------7889999 Q gi|254780368|r 47 LQLREKGIATEVIVVSI--G-SCKVEEVLKNSLAMGADRGILIESN------------------ET-------LEPLSIA 98 (249) Q Consensus 47 l~lke~~~g~~V~~lsv--G-~~~~~~~Lr~alAmGaD~ai~i~d~------------------~~-------~D~~~~A 98 (249) ..|+|+ |.+|+++++ | +.+.+..-++|+..||.+.+.+.-+ ++ ..-..+| T Consensus 23 ~wL~e~--g~eVia~~~d~Gq~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~i~ana~yeg~Y~l~tslaRplia 100 (413) T 2nz2_A 23 VWLKEQ--GYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIA 100 (413) T ss_dssp HHHHHT--TEEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHH T ss_pred HHHHHC--CCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 999974--986999999699878889999999983998899971799999999999997364558873124552187999 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEE Q ss_conf 99999861268649999611358886128999999857961332 Q gi|254780368|r 99 KILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATF 142 (249) Q Consensus 99 ~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~ 142 (249) +.+..++++.+.+.|.-| ++-.++-||-.-++-..=-|.+.. T Consensus 101 ~~~v~~A~~~ga~~vaHG--~TGkGNDQvRFe~~~~aL~P~~~v 142 (413) T 2nz2_A 101 RKQVEIAQREGAKYVSHG--ATGKGNDQVRFELSCYSLAPQIKV 142 (413) T ss_dssp HHHHHHHHHHTCSEEECC--CCTTSSHHHHHHHHHHHHCTTCEE T ss_pred HHHHHHHHHCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCCC T ss_conf 999999998399798358--776863688899999986999702 No 45 >1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A* Probab=51.19 E-value=12 Score=16.66 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=36.7 Q ss_pred EECCCHHHHHHHHHHHHHHCC----CCCCEEEEEECC---CHHHH----HHHHHHHHCCCCCEEEECC-CCCCHHHHHHH Q ss_conf 332601368999999998559----985289999714---10158----8888785077762376336-54788999999 Q gi|254780368|r 33 ISMNPFDEIALEESLQLREKG----IATEVIVVSIGS---CKVEE----VLKNSLAMGADRGILIESN-ETLEPLSIAKI 100 (249) Q Consensus 33 ~~in~~D~~AlE~Al~lke~~----~g~~V~~lsvG~---~~~~~----~Lr~alAmGaD~ai~i~d~-~~~D~~~~A~~ 100 (249) +.+.++||.+++.|+.-..+. .-.++..|-++. ..... .+-. .+|....+..-|- ...-.+..|-. T Consensus 61 r~v~~~~Ed~~tma~~Aa~~~L~~~~~~~Id~li~~T~t~~~~~ps~a~~v~~--~Lgl~~~~~~~Di~~aC~G~~~AL~ 138 (402) T 1ysl_A 61 MAVNPISQDIVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHR--LMGIQPFARSFEIKEAAYGATAGLQ 138 (402) T ss_dssp EEECCTTCCHHHHHHHHHHTTCCHHHHHHEEEEEEECSSCSBSSSCHHHHHHH--HTTCCSSCEEEEEESGGGHHHHHHH T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCHHHHHHH--HCCCCCCCEEEECCCCCHHHHHHHH T ss_conf 99689999999999999999998589666899999947899778608899998--6298998459883141248999999 Q ss_pred HHHH-HHC--CCCCEEEEEECCC Q ss_conf 9998-612--6864999961135 Q gi|254780368|r 101 LREI-VKK--ENPIIVIAGKQTT 120 (249) Q Consensus 101 La~~-i~~--~~~DLIl~G~~S~ 120 (249) +|.. ++. ...-||+|+..++ T Consensus 139 ~A~~~i~sg~~~~aLVV~sD~~s 161 (402) T 1ysl_A 139 LAKNHVALHPDKKVLVVAADIAK 161 (402) T ss_dssp HHHHHHHHSTTCEEEEEEEEEEC T ss_pred HHHHHHHCCCCCEEEEEECCCCC T ss_conf 99999865888658997401211 No 46 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Probab=50.80 E-value=12 Score=16.62 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=57.8 Q ss_pred CCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEE-CCCEEEEEEECCC--CEEE Q ss_conf 788---999999999861268649999611358886128999999857961332443343-2865999983589--6799 Q gi|254780368|r 92 LEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKI-IDNHAIVTREVGH--GTMT 165 (249) Q Consensus 92 ~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~-~~~~~~v~r~~e~--g~e~ 165 (249) .|| ...++.||..++..++|+|++ .+...--.+..+|..||.|++-.-.+-.. .+..+........ ..+. T Consensus 110 ~dP~~l~~lG~~lA~~~~~~~iD~Vvg----v~~~GiplA~~vA~~LgvP~v~~rk~~k~~~~~~i~~~~~s~~~~~~~~ 185 (291) T 1o57_A 110 GKPSVLSKVGKLFASVFAEREIDVVMT----VATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRIQT 185 (291) T ss_dssp TCHHHHHHHHHHHHHHTTTSCCSEEEE----ETTTTHHHHHHHHHHHTCCEEEEBCC-----CCEEEEEEECSSCCSEEE T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEE----CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCCEE T ss_conf 699999999999999737789979993----1756699999999996999799996047789856999887144764225 Q ss_pred EEECCC------EEEEEECCCCCCCCCCHHHHHHHHH Q ss_conf 996398------8999843556545469888998852 Q gi|254780368|r 166 METPLP------AVITVDLNLNEPRYISLPNIIKARK 196 (249) Q Consensus 166 v~~~lP------avisv~~~~n~PR~psl~~im~A~k 196 (249) +.+... -|+-|+.-+..- -|+++++..-+ T Consensus 186 ~~~~~~~l~~g~rVLIVDDvi~tG--~T~~~~i~llr 220 (291) T 1o57_A 186 MSLAKRSMKTGSNVLIIDDFMKAG--GTINGMINLLD 220 (291) T ss_dssp EEEEGGGSCTTCEEEEEEEEESSS--HHHHHHHHHTG T ss_pred EEECCCCCCCCCEEEEEHHHHHCC--HHHHHHHHHHH T ss_conf 651123357885699842423327--78999999999 No 47 >3fk5_A 3-oxoacyl-synthase III; bacterial blight, XOO4209, FABH, xanthomonas oryzae PV. oryzae KACC10331, cytoplasm, multifunctional enzyme; 2.05A {Xanthomonas oryzae PV} Probab=49.89 E-value=12 Score=16.53 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCC--CCCCEEEEEECCC---HHHH--HHHHHHHHCCCC-CEEEECCCCCCHHHHHHHHHHH-HHCCCC- Q ss_conf 8999999998559--9852899997141---0158--888878507776-2376336547889999999998-612686- Q gi|254780368|r 41 IALEESLQLREKG--IATEVIVVSIGSC---KVEE--VLKNSLAMGADR-GILIESNETLEPLSIAKILREI-VKKENP- 110 (249) Q Consensus 41 ~AlE~Al~lke~~--~g~~V~~lsvG~~---~~~~--~Lr~alAmGaD~-ai~i~d~~~~D~~~~A~~La~~-i~~~~~- 110 (249) -|+++|.++-++. .-.+|..|-.+.. .... +-+-+-.+|..+ +....-..+.-.+..|-.+|.. ++.... T Consensus 64 mA~~Aa~~aL~~ag~~~~dId~lI~~s~t~~~~~P~~a~~v~~~LGl~~~~~~~dv~~~C~g~~~aL~~A~~~l~~g~~~ 143 (338) T 3fk5_A 64 AATQAARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVANACLAFINGMDIAARMLERGEID 143 (338) T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEECCSSCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHHHHHHHHHHHHTTSCS T ss_pred HHHHHHHHHHHHCCCCHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999999849898999999998214897587499999998189986689861301579999999999887529963 Q ss_pred -CEEEEEEC Q ss_conf -49999611 Q gi|254780368|r 111 -IIVIAGKQ 118 (249) Q Consensus 111 -DLIl~G~~ 118 (249) -||+++.. T Consensus 144 ~~Lvv~~e~ 152 (338) T 3fk5_A 144 YALVVDGET 152 (338) T ss_dssp EEEEEEEEC T ss_pred EEEEECCHH T ss_conf 699961412 No 48 >1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* Probab=48.44 E-value=13 Score=16.38 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=68.0 Q ss_pred EEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEE--CC---CHHHHHHHHHHHHCCC Q ss_conf 603038876059807888163248773326013689999999985599852899997--14---1015888887850777 Q gi|254780368|r 7 IKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSI--GS---CKVEEVLKNSLAMGAD 81 (249) Q Consensus 7 vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsv--G~---~~~~~~Lr~alAmGaD 81 (249) +|.+|--. ++-+--+|| ||++ + ....|+|+ |.+|+++++ |. ++.+..-++|+..||. T Consensus 4 ~~~~~~gk-KVvLAySGG-LDTS-----------v---~l~wL~e~--g~eVia~~~DvGQ~~~ed~e~i~~kA~~~GA~ 65 (455) T 1k92_A 4 LKHLPVGQ-RIGIAFSGG-LDTS-----------A---ALLWMRQK--GAVPYAYTANLGQPDEEDYDAIPRRAMEYGAE 65 (455) T ss_dssp ECSCCTTS-EEEEECCSS-HHHH-----------H---HHHHHHHT--TCEEEEEEEECCCTTCSCTTHHHHHHHHHTCS T ss_pred HHHCCCCC-EEEEEECCC-CHHH-----------H---HHHHHHHC--CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 33199898-899994898-2899-----------9---99999974--98699999979998504179999999971997 Q ss_pred CCEEEECCC------------C-----------CCH-----HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHH Q ss_conf 623763365------------4-----------788-----999999999861268649999611358886128999999 Q gi|254780368|r 82 RGILIESNE------------T-----------LEP-----LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAA 133 (249) Q Consensus 82 ~ai~i~d~~------------~-----------~D~-----~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~ 133 (249) +.+.+.-++ + .-. ..+|+.+.+++++.+.+.|--| |+-.++-||=.-++. T Consensus 66 ~~~viD~r~eF~~~~i~~i~a~a~y~~~~~~~Y~l~tslaRplia~~~v~~A~~~ga~aiaHG--~TGkGNDQvRFe~~~ 143 (455) T 1k92_A 66 NARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG--STYKGNDIERFYRYG 143 (455) T ss_dssp EEEEEECHHHHHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECC--CCTTSSHHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC--CCCCCCCHHHHHHHH T ss_conf 899971899999998999985535541035665476520898899999999998299299547--666765056577789 Q ss_pred HHCCCC Q ss_conf 857961 Q gi|254780368|r 134 LMRWPQ 139 (249) Q Consensus 134 ~Lg~p~ 139 (249) ..--|. T Consensus 144 ~al~P~ 149 (455) T 1k92_A 144 LLTNAE 149 (455) T ss_dssp HHHCTT T ss_pred HHCCCC T ss_conf 740998 No 49 >3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infectious diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2} Probab=48.42 E-value=13 Score=16.38 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=14.9 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCE Q ss_conf 88999999999861268649999--6113588861 Q gi|254780368|r 93 EPLSIAKILREIVKKENPIIVIA--GKQTTDNESN 125 (249) Q Consensus 93 D~~~~A~~La~~i~~~~~DLIl~--G~~S~D~~~g 125 (249) .|+.+...|.+++.+.--.+|+. |.-+.|++.| T Consensus 113 tT~G~GelI~~Al~~G~~~iiiglGGSaT~DgG~G 147 (383) T 3cwc_A 113 TSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAG 147 (383) T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSBCCCSTTHH T ss_pred CCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH T ss_conf 57549999999997698679994278544147778 No 50 >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Probab=47.80 E-value=13 Score=16.32 Aligned_cols=66 Identities=12% Similarity=0.236 Sum_probs=34.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 260136899999999855998528999971410158888878507776237633654788999999999861 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK 106 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~ 106 (249) +|-.+.+.+|..-+|++......|.++|.- .......+|+..||+. |+... .++-....+|..+++ T Consensus 59 i~mP~~~G~e~~~~ir~~~~~~~iivlt~~--~~~~~~~~al~~Ga~~-yl~Kp---~~~~~L~~ai~~v~~ 124 (153) T 3cz5_A 59 LTLPGPGGIEATRHIRQWDGAARILIFTMH--QGSAFALKAFEAGASG-YVTKS---SDPAELVQAIEAILA 124 (153) T ss_dssp SCCSSSCHHHHHHHHHHHCTTCCEEEEESC--CSHHHHHHHHHTTCSE-EEETT---SCTTHHHHHHHHHTT T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEE--CCHHHHHHHHHCCCCE-EEECC---CCHHHHHHHHHHHHC T ss_conf 457998789999999985899968999814--8999999999869983-89689---999999999999984 No 51 >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structural genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Probab=47.70 E-value=13 Score=16.31 Aligned_cols=57 Identities=19% Similarity=0.105 Sum_probs=37.5 Q ss_pred CEEEEEEEEECCCEEEEEE-ECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 1332443343286599998-35896799996398899984355654546988899885 Q gi|254780368|r 139 QATFVSNIKIIDNHAIVTR-EVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKAR 195 (249) Q Consensus 139 ~vt~v~~i~~~~~~~~v~r-~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~ 195 (249) +-|.|.+++-+++...++. ...++.+..+-..-+|+.++...+.|+.|+++++-.-+ T Consensus 134 ~nt~V~~v~~~~~~w~V~~~~~~~~~~~~~~~fd~VvvatG~~~~P~~P~ipg~~~f~ 191 (447) T 2gv8_A 134 LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYA 191 (447) T ss_dssp CSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHH T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCCCCCCHHHHC T ss_conf 3469999981489258999960003424799884333588773876778888744530 No 52 >3jpw_A Glutamate [NMDA] receptor subunit epsilon-2; amino terminal domain, zinc, phenylethanolamine, calcium, cell junction, cell membrane; HET: NAG; 2.80A {Rattus norvegicus} PDB: 3jpy_A* Probab=47.68 E-value=13 Score=16.31 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHCCCCC Q ss_conf 99999999986126864 Q gi|254780368|r 95 LSIAKILREIVKKENPI 111 (249) Q Consensus 95 ~~~A~~La~~i~~~~~D 111 (249) ..-++++++.++..+.. T Consensus 120 ~~q~~a~~~ll~~~~W~ 136 (363) T 3jpw_A 120 EQQASVMLNIMEEYDWY 136 (363) T ss_dssp HHHHHHHHHHHHTTTCC T ss_pred HHHHHHHHHHHHHCCCC T ss_conf 99999999999866772 No 53 >1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Probab=47.66 E-value=13 Score=16.31 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=44.3 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHHH---HHHHHHHCCCCCEEEEEECCCCCCCEEH Q ss_conf 99852899997141015888887850777623763--365478899999---9999861268649999611358886128 Q gi|254780368|r 53 GIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIE--SNETLEPLSIAK---ILREIVKKENPIIVIAGKQTTDNESNQT 127 (249) Q Consensus 53 ~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~--d~~~~D~~~~A~---~La~~i~~~~~DLIl~G~~S~D~~~g~v 127 (249) ..+-++..+.-|. ..+.....---.|-..-..+. .+...-+..+++ .+...+++..||+|++ ..|.++..- T Consensus 31 ~~~~~~~li~tG~-H~~~~~~~~~~~gi~~d~~~~~~~~~~~~~~~~~~~~~~~~~il~~~kpD~Vlv---~GDr~~~la 106 (376) T 1v4v_A 31 IPGLKPLVLLTGQ-HREQLRQALSLFGIQEDRNLDVMQERQALPDLAARILPQAARALKEMGADYVLV---HGDTLTTFA 106 (376) T ss_dssp STTEEEEEEECSS-CHHHHHHHHHTTTCCCSEECCCCSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEE---ESSCHHHHH T ss_pred CCCCCEEEEECCC-CHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE---ECCCCHHHH T ss_conf 8999889998268-856674711340997665678888888899999999999999974059998999---689707999 Q ss_pred HHHHHHHHCCCCE Q ss_conf 9999998579613 Q gi|254780368|r 128 GQMLAALMRWPQA 140 (249) Q Consensus 128 ~~~lA~~Lg~p~v 140 (249) ++..|..+++|.+ T Consensus 107 ~a~aa~~~~ipi~ 119 (376) T 1v4v_A 107 VAWAAFLEGIPVG 119 (376) T ss_dssp HHHHHHHTTCCEE T ss_pred HHHHHHHCCCCEE T ss_conf 9999986297479 No 54 >1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1 Probab=45.94 E-value=13 Score=16.29 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=18.4 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCCEE Q ss_conf 788999999999861268649999--61135888612 Q gi|254780368|r 92 LEPLSIAKILREIVKKENPIIVIA--GKQTTDNESNQ 126 (249) Q Consensus 92 ~D~~~~A~~La~~i~~~~~DLIl~--G~~S~D~~~g~ 126 (249) +.|+.+-..|.+++++.--.+|++ |.-+.|++.|. T Consensus 107 atT~G~GelI~~Al~~G~~~IiiglGGSAT~DgG~G~ 143 (371) T 1to6_A 107 IQTRGIGELIRHLISQEIKEIYIGVGGTASNDGGIGI 143 (371) T ss_dssp CCCHHHHHHHHHHHHTTCCEEEEEECSBCCCSTTHHH T ss_pred HCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH T ss_conf 4475189999999975998899806886454277899 No 55 >3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase, center for structural genomics of infectious diseases; 2.35A {Vibrio cholerae} Probab=44.69 E-value=11 Score=16.89 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=44.6 Q ss_pred CCCCEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEEEECCCCCCCEEHHH Q ss_conf 9852899997141-0158888878507776237633654788999999---99986126864999961135888612899 Q gi|254780368|r 54 IATEVIVVSIGSC-KVEEVLKNSLAMGADRGILIESNETLEPLSIAKI---LREIVKKENPIIVIAGKQTTDNESNQTGQ 129 (249) Q Consensus 54 ~g~~V~~lsvG~~-~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~---La~~i~~~~~DLIl~G~~S~D~~~g~v~~ 129 (249) .+-++..+.-|.- +....+.+.+.+-.|--+.+......-...++.+ ++..+++..||+|+. -.|.++..-++ T Consensus 52 ~~~~~~li~TGqH~d~~~~~~~~~~i~~d~~~~~~~~~~s~~~~~~~~i~~~~~~~~~~kpD~VlV---~GDr~e~la~a 128 (396) T 3dzc_A 52 NRFVAKVCVTGQHREMLDQVLELFSITPDFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLV---HGDTATTFAAS 128 (396) T ss_dssp TTEEEEEEECCSSSHHHHHHHHHTTCCCSEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTSHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHH T ss_conf 998779999089988999999854988873221588999899999999999999999719999999---58886225489 Q ss_pred HHHHHHCCCCEE Q ss_conf 999985796133 Q gi|254780368|r 130 MLAALMRWPQAT 141 (249) Q Consensus 130 ~lA~~Lg~p~vt 141 (249) ..|..+++|.+- T Consensus 129 ~aa~~~~ipi~H 140 (396) T 3dzc_A 129 LAAYYQQIPVGH 140 (396) T ss_dssp HHHHTTTCCEEE T ss_pred HHHHHHCCCEEE T ss_conf 999982997899 No 56 >2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structural genomics, NPPSFA; 1.64A {Thermus thermophilus HB8} Probab=43.73 E-value=15 Score=15.92 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=44.5 Q ss_pred CEEEEEECCCH--------HHHHHHHHHH-HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCE Q ss_conf 28999971410--------1588888785-077762376336--547889999999998612686499996113588861 Q gi|254780368|r 57 EVIVVSIGSCK--------VEEVLKNSLA-MGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESN 125 (249) Q Consensus 57 ~V~~lsvG~~~--------~~~~Lr~alA-mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g 125 (249) ++-++|+|.+. ....|.+.|. .|. .+... -.-|.-.+..+|..++.+.++|+|++-=..+-+..- T Consensus 3 rv~Iitigde~~~G~~~D~ng~~l~~~L~~~G~----~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~~~~D 78 (164) T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPF----EVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRD 78 (164) T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSE----EEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC T ss_pred EEEEEEECCCCCCCCEECCCHHHHHHHHHHCCC----EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 999999588750467136509999999996899----8989999798889999999999845498689967861389985 Q ss_pred EHHHHHHHHHCCC Q ss_conf 2899999985796 Q gi|254780368|r 126 QTGQMLAALMRWP 138 (249) Q Consensus 126 ~v~~~lA~~Lg~p 138 (249) .++..+++.++.. T Consensus 79 ~t~~ai~~~~~~~ 91 (164) T 2is8_A 79 RTPEATRELLDRE 91 (164) T ss_dssp CHHHHHHTTCSEE T ss_pred CCHHHHHHHHCCC T ss_conf 6588899985665 No 57 >1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A* Probab=43.70 E-value=15 Score=15.92 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=49.2 Q ss_pred CCH---HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEE---EECCCEEE--EEEECCCCE Q ss_conf 788---9999999998612686499996113588861289999998579613324433---43286599--998358967 Q gi|254780368|r 92 LEP---LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNI---KIIDNHAI--VTREVGHGT 163 (249) Q Consensus 92 ~D~---~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i---~~~~~~~~--v~r~~e~g~ 163 (249) .|| ..+++.|++.++..++|.|++ -. ...=-.+..+|..||.|++- +.+- ....+.+. ..+...++. T Consensus 33 ~dP~~~~~i~~~la~~~~~~~~d~Ivg-~~---~~GiplA~~lA~~L~~p~v~-~Rk~~~~~~~~~~~~~~~~~~~~~~~ 107 (197) T 1y0b_A 33 IDPLLMQRIGDEFASRFAKDGITKIVT-IE---SSGIAPAVMTGLKLGVPVVF-ARKHKSLTLTDNLLTASVYSFTKQTE 107 (197) T ss_dssp ECHHHHHHHHHHHHHHTTTTTCCEEEE-ET---TTTHHHHHHHHHHHTCCEEE-EBSSCCSSCCSSEEEEEEEETTTTEE T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEE-EC---CCHHHHHHHHHHHHCCCEEE-EEECCCCCCCCCEEEEEEEEECCCCE T ss_conf 379999999999999835899989998-66---21099999999986998799-98507778988469998984045541 Q ss_pred EEEEECC------CEEEEEECCCCCC Q ss_conf 9999639------8899984355654 Q gi|254780368|r 164 MTMETPL------PAVITVDLNLNEP 183 (249) Q Consensus 164 e~v~~~l------Pavisv~~~~n~P 183 (249) .++.+.. --|+-|+.=+.+- T Consensus 108 ~~~~~~~~~l~~g~rVlIVDDvitTG 133 (197) T 1y0b_A 108 SQIAVSGTHLSDQDHVLIIDDFLANG 133 (197) T ss_dssp EEEEEEGGGCCTTCEEEEEEEEESSC T ss_pred EEEEEEHHHCCCCCEEEEEEHHHHCC T ss_conf 14654045416997999972021328 No 58 >1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Probab=43.67 E-value=9.9 Score=17.09 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=7.6 Q ss_pred CEEEEEEECCCCE Q ss_conf 6599998358967 Q gi|254780368|r 151 NHAIVTREVGHGT 163 (249) Q Consensus 151 ~~~~v~r~~e~g~ 163 (249) +.+.+++.+.+.. T Consensus 202 ~~vliEk~i~g~k 214 (1073) T 1a9x_A 202 KELLIDESLIGWK 214 (1073) T ss_dssp SCEEEEECCTTSE T ss_pred CCEEEEEECCCCE T ss_conf 8679998517855 No 59 >3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora} Probab=42.91 E-value=15 Score=15.84 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=52.4 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC-C-----------CC----------CHHHHHH Q ss_conf 999999998559985289999714101588888785077762376336-5-----------47----------8899999 Q gi|254780368|r 42 ALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN-E-----------TL----------EPLSIAK 99 (249) Q Consensus 42 AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~-~-----------~~----------D~~~~A~ 99 (249) +|+.|-.|.++ |-+|+++|- +...+.+++ .|..- +-+.+. . .. ....... T Consensus 37 ~l~la~~L~~r--GH~V~v~t~--~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (416) T 3iaa_A 37 TLTVVTELVRR--GHRVSYVTA--GGFAEPVRA---AGATV-VPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLR 108 (416) T ss_dssp HHHHHHHHHHT--TCEEEEEEC--GGGHHHHHH---TTCEE-EECCCSGGGCCHHHHHHSCSSCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHC--CCEEEEEEC--CHHHHHHHH---CCCEE-EECCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999978--898999968--236778986---79879-97277656533011036543113468999999999999 Q ss_pred HHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEE Q ss_conf 999986126864999961135888612899999985796133244 Q gi|254780368|r 100 ILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVS 144 (249) Q Consensus 100 ~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~ 144 (249) .+.+.++...||+|++. ......+..+|+.+++|++.... T Consensus 109 ~l~~~i~~~~pDvv~~~-----~~~~~~~~~~a~~~~~p~v~~~~ 148 (416) T 3iaa_A 109 ATAEALDGDVPDLVLYD-----DFPFIAGQLLAARWRRPAVRLSA 148 (416) T ss_dssp HHHHHHTTSCCSEEEEE-----STTHHHHHHHHHHHTCCEEEEES T ss_pred HHHHHHHCCCCCEEEEC-----CCCCHHHHHHHHHCCCCEEEEEC T ss_conf 99999726898189982-----64302688999970898699814 No 60 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=42.19 E-value=16 Score=15.77 Aligned_cols=74 Identities=16% Similarity=0.025 Sum_probs=46.6 Q ss_pred HCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEECCC------EEEEEECC Q ss_conf 126864999961135888612899999985796133244334328659999835896799996398------89998435 Q gi|254780368|r 106 KKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLP------AVITVDLN 179 (249) Q Consensus 106 ~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~~lP------avisv~~~ 179 (249) +..++|.|++ - +...=-.+..+|..||.|++-.-..-.............+.+..++++.-. -|+-|+.= T Consensus 56 ~~~~~D~Vvg-~---e~~Gi~la~~lA~~L~~p~v~~RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~i~~G~rVlIVDDv 131 (187) T 1g2q_A 56 PEVKIDYIVG-L---ESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDI 131 (187) T ss_dssp TTSCCCEEEE-E---TTTHHHHHHHHHHHHTCEEEEEEETTCSCSSEEEEEEECSSCEEEEEEETTSSCTTCEEEEEEEE T ss_pred CCCCCCEEEE-E---CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECC T ss_conf 7679879998-3---45753558999998699848997368788640479875156541788861444678679998300 Q ss_pred CCCC Q ss_conf 5654 Q gi|254780368|r 180 LNEP 183 (249) Q Consensus 180 ~n~P 183 (249) +.+- T Consensus 132 i~TG 135 (187) T 1g2q_A 132 IATG 135 (187) T ss_dssp ESSC T ss_pred CCCC T ss_conf 4037 No 61 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Probab=41.97 E-value=16 Score=15.75 Aligned_cols=12 Identities=0% Similarity=-0.117 Sum_probs=6.3 Q ss_pred CEEEEEEECCCC Q ss_conf 659999835896 Q gi|254780368|r 151 NHAIVTREVGHG 162 (249) Q Consensus 151 ~~~~v~r~~e~g 162 (249) +.+.+++-+++. T Consensus 194 ~~v~iE~~i~~~ 205 (451) T 2vpq_A 194 GGLYMEKFIENF 205 (451) T ss_dssp CCEEEEECCCSE T ss_pred CCEEEEEECCCC T ss_conf 838999735997 No 62 >2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Probab=41.30 E-value=16 Score=15.68 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=48.8 Q ss_pred EEEEECCCHHHHHHHHH----HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHH Q ss_conf 99997141015888887----85077762376336547889999999998612686499996113588861289999998 Q gi|254780368|r 59 IVVSIGSCKVEEVLKNS----LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL 134 (249) Q Consensus 59 ~~lsvG~~~~~~~Lr~a----lAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~ 134 (249) +++-||..+.....+++ -.+|..--+.|... --.| ..+.++.+..+.+.++++. |.++++|+.+|.. T Consensus 2 V~IimGS~SD~~v~~~a~~~L~~~gi~~e~~V~SA-HR~p----~~l~~~~~~~~~~viIa~A----G~aaaLpgvvA~~ 72 (157) T 2ywx_A 2 ICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASA-HRTP----ELVEEIVKNSKADVFIAIA----GLAAHLPGVVASL 72 (157) T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCT-TTCH----HHHHHHHHHCCCSEEEEEE----ESSCCHHHHHHTT T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCH----HHHHHHHHHCCCCEEEEEC----CCCCCCHHHHHHC T ss_conf 89998868449999999999998399658866643-0699----9999998634547799943----6521223358870 Q ss_pred HCCCCEEEEEE Q ss_conf 57961332443 Q gi|254780368|r 135 MRWPQATFVSN 145 (249) Q Consensus 135 Lg~p~vt~v~~ 145 (249) -.+|.+..=.+ T Consensus 73 t~~PVIgVP~~ 83 (157) T 2ywx_A 73 TTKPVIAVPVD 83 (157) T ss_dssp CSSCEEEEEEC T ss_pred CCCCCEECCCC T ss_conf 79975755667 No 63 >1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Probab=39.80 E-value=17 Score=15.54 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=45.3 Q ss_pred CCCHHHHHHHH---HHHHHHCCCCCCEEEEEE--CCC----------------------HHHHHHHHHHHHCCCCCEEEE Q ss_conf 26013689999---999985599852899997--141----------------------015888887850777623763 Q gi|254780368|r 35 MNPFDEIALEE---SLQLREKGIATEVIVVSI--GSC----------------------KVEEVLKNSLAMGADRGILIE 87 (249) Q Consensus 35 in~~D~~AlE~---Al~lke~~~g~~V~~lsv--G~~----------------------~~~~~Lr~alAmGaD~ai~i~ 87 (249) --|-|+. +-. -.++.++ |.+|+++++ |.. +..+..+.+-.+|..+..++. T Consensus 12 aHPDDe~-l~~GGtla~~~~~--G~~v~vv~~T~Ge~G~~~~~~~~~~~~~~~~~l~~~R~~E~~~a~~~lg~~~~~~L~ 88 (303) T 1q74_A 12 AHPDDES-LSNGATIAHYTSR--GAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGVSAPIYLG 88 (303) T ss_dssp SSTTHHH-HHHHHHHHHHHHT--TCEEEEEESCCCTTCCCSSSTTGGGSTTTTCCHHHHHHHHHHHHHHHTTCCCCEETT T ss_pred ECCCCHH-HHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC T ss_conf 3898068-8899999999976--993899997589765677720002443237889999999999999863565325637 Q ss_pred CCC-------------------CCCHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 365-------------------478899999999986126864999961 Q gi|254780368|r 88 SNE-------------------TLEPLSIAKILREIVKKENPIIVIAGK 117 (249) Q Consensus 88 d~~-------------------~~D~~~~A~~La~~i~~~~~DLIl~G~ 117 (249) ... ..+...+...|...|++..+|+|++-. T Consensus 89 ~~d~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ir~~~Pdvv~t~~ 137 (303) T 1q74_A 89 GAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRELRPHVVVTYD 137 (303) T ss_dssp STTSSBCCCCC----CCSCBGGGSCHHHHHHHHHHHHHHHCCSEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 8853233445677655420232069999999999999970898899828 No 64 >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Probab=37.69 E-value=19 Score=15.33 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=14.9 Q ss_pred ECCCHHHH----HHHHHHHHHHCCC--CCCEEEEEECC Q ss_conf 32601368----9999999985599--85289999714 Q gi|254780368|r 34 SMNPFDEI----ALEESLQLREKGI--ATEVIVVSIGS 65 (249) Q Consensus 34 ~in~~D~~----AlE~Al~lke~~~--g~~V~~lsvG~ 65 (249) .+-+.+|. |+++|.++-++.+ -.++..|-+|. T Consensus 44 ~~~~~~Ed~~tmA~~Aa~~lL~~~~i~p~dId~liv~T 81 (450) T 2f82_A 44 AFCTELEDVISMSFNAVTSLLEKYKIDPKQIGRLEVGS 81 (450) T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHTTCCGGGEEEEEEEC T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEE T ss_conf 97989999999999999999997599989999999993 No 65 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=36.80 E-value=19 Score=15.24 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=34.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 260136899999999855998528999971410158888878507776237633654788999999999861 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK 106 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~ 106 (249) ++-.|.+.+|..-+||+.+....|.++|... .....++|+..||+. |+... .++-....++.++.+ T Consensus 54 ~~mP~~~G~e~~~~lr~~~~~~~iivlS~~~--~~~~~~~a~~~Ga~~-yl~Kp---~~~~~L~~ai~~v~~ 119 (134) T 3f6c_A 54 VDIPGVNGIQVLETLRKRQYSGIIIIVSAKN--DHFYGKHCADAGANG-FVSKK---EGMNNIIAAIEAAKN 119 (134) T ss_dssp TTCSSSCHHHHHHHHHHTTCCSEEEEEECC-----CTHHHHHHTTCSE-EEEGG---GCTHHHHHHHHHHHT T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECCC--CHHHHHHHHHCCCCE-EEECC---CCHHHHHHHHHHHHC T ss_conf 9999998999999999529998389996789--999999999879989-99798---999999999999987 No 66 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=36.24 E-value=20 Score=15.18 Aligned_cols=66 Identities=9% Similarity=0.042 Sum_probs=33.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 260136899999999855998528999971410158888878507776237633654788999999999861 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK 106 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~ 106 (249) ++-.+-..+|..-++++......|+++|.- ...+...+|+..||+. |+. .+.++-.....+..+++ T Consensus 57 ~~mp~~~G~~l~~~~~~~~~~~pvI~lT~~--~~~~~~~~a~~~Ga~d-yl~---KP~~~~~L~~~i~~~l~ 122 (143) T 3jte_A 57 MKMPKLSGMDILREIKKITPHMAVIILTGH--GDLDNAILAMKEGAFE-YLR---KPVTAQDLSIAINNAIN 122 (143) T ss_dssp SCCSSSCHHHHHHHHHHHCTTCEEEEEECT--TCHHHHHHHHHTTCSE-EEE---SSCCHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECC--CCHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHHH T ss_conf 777777889999999987899969999888--9999999999869989-982---89999999999999999 No 67 >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A Probab=35.79 E-value=20 Score=15.14 Aligned_cols=30 Identities=3% Similarity=-0.083 Sum_probs=16.5 Q ss_pred CCCCHHHHHHHHHHHHHC-CCCCEEEEEECC Q ss_conf 547889999999998612-686499996113 Q gi|254780368|r 90 ETLEPLSIAKILREIVKK-ENPIIVIAGKQT 119 (249) Q Consensus 90 ~~~D~~~~A~~La~~i~~-~~~DLIl~G~~S 119 (249) ....+...|-.+|...=+ ..+|.+|+|.-| T Consensus 108 ~ACss~~~Al~~Aa~~I~sG~ad~vLa~~ss 138 (347) T 3lma_A 108 GACSTSMESIAISSALIDGGFAKRALAATSS 138 (347) T ss_dssp CSTTHHHHHHHHHHHHHHTTSCSEEEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 6555699999999999977999999999654 No 68 >1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Probab=35.47 E-value=19 Score=15.32 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=42.1 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC Q ss_conf 478899999999986126864999961135888612---------------------------------89999998579 Q gi|254780368|r 91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW 137 (249) Q Consensus 91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~ 137 (249) -.||.-++++|++++...+.+=||.|..|.|...|. |---+-..||| T Consensus 209 R~dPV~V~Rv~SAmvNs~DD~GVL~GnWsgdY~~Gt~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgV~~TVlRcLGI 288 (695) T 1g0d_A 209 RSDPVYVGRTITAMVNSNGDRGVLTGRWEEPYTDGVAPYRWTGSVPILQQWSKAGVRPVKYGQCWVFAAVACTVLRCLGI 288 (695) T ss_dssp TTCHHHHHHHHHHHHTTCTTTCSEEECCSSCCTTSCCGGGCSBSHHHHHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTC T ss_pred CCCCEEEEEEHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 59955763320454066899817835766777899685313586999999875589612146034467778889986388 Q ss_pred CC--EEEEE Q ss_conf 61--33244 Q gi|254780368|r 138 PQ--ATFVS 144 (249) Q Consensus 138 p~--vt~v~ 144 (249) |+ ||+-. T Consensus 289 P~RvVTNf~ 297 (695) T 1g0d_A 289 PTRPITNFA 297 (695) T ss_dssp CEEEEEEEE T ss_pred CCEEECCCC T ss_conf 715641434 No 69 >1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1 Probab=34.99 E-value=20 Score=15.05 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=46.4 Q ss_pred HHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHHHCCCCCEEEEEEC------CCCCCCEEHHHHHHHHHCCCCEEEE Q ss_conf 8888785077762376336547889-99999999861268649999611------3588861289999998579613324 Q gi|254780368|r 71 VLKNSLAMGADRGILIESNETLEPL-SIAKILREIVKKENPIIVIAGKQ------TTDNESNQTGQMLAALMRWPQATFV 143 (249) Q Consensus 71 ~Lr~alAmGaD~ai~i~d~~~~D~~-~~A~~La~~i~~~~~DLIl~G~~------S~D~~~g~v~~~lA~~Lg~p~vt~v 143 (249) .+++++.-|.+ ++.|. -|.|+. .||.+|+-.++...-=+||+|.| |+|+-.....+..+.....+-+..+ T Consensus 160 ~i~~~~~~~~~-GvVVt--HGTDTM~yTA~aLsf~l~~~~kPVVlTGSqrp~d~~ssDa~~NL~~Av~~A~s~~~~v~vv 236 (438) T 1zq1_A 160 EVAKALNSGDY-GVVVA--HGTDTMGYTAAALSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATSEVAEVMVV 236 (438) T ss_dssp HHHHHHHTTCS-EEEEE--CCSSSHHHHHHHHHHHEESCCSCEEEECCSSCTTSTTCSHHHHHHHHHHHHTSSBCSEEEE T ss_pred HHHHHHCCCCC-EEEEE--CCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 99997436997-39995--7861799999999998628999999969677888878468999999999973747724788 Q ss_pred EE Q ss_conf 43 Q gi|254780368|r 144 SN 145 (249) Q Consensus 144 ~~ 145 (249) .. T Consensus 237 ~~ 238 (438) T 1zq1_A 237 MH 238 (438) T ss_dssp EE T ss_pred EC T ss_conf 31 No 70 >3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes} Probab=34.16 E-value=21 Score=14.97 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=24.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECC Q ss_conf 2601368999999998559985289999714 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGS 65 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~ 65 (249) .++....|++.|+.+.-+..+.+++++++-+ T Consensus 10 ~s~~s~~al~~a~~~~~~~~~~~l~l~~v~~ 40 (138) T 3idf_A 10 DTEACERAAQYILDMFGKDADCTLTLIHVKP 40 (138) T ss_dssp SSHHHHHHHHHHHHHHTTCTTEEEEEEEEEC T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEEECC T ss_conf 9989999999999999855898899998216 No 71 >1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A Probab=33.49 E-value=22 Score=14.90 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=52.0 Q ss_pred HHHHCCCCCCEEEEEECCCH--------HHHHHHHHHH----HCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEE Q ss_conf 99855998528999971410--------1588888785----077762376336--547889999999998612686499 Q gi|254780368|r 48 QLREKGIATEVIVVSIGSCK--------VEEVLKNSLA----MGADRGILIESN--ETLEPLSIAKILREIVKKENPIIV 113 (249) Q Consensus 48 ~lke~~~g~~V~~lsvG~~~--------~~~~Lr~alA----mGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLI 113 (249) .+++...--+|-++|+|..- ....|+..|. .|.+ +.+. -.=|...+...|.+++.+.++|+| T Consensus 7 ~~~~~~~~i~v~IitvsD~~~~g~~~D~sGp~l~~~l~~~~~~G~~----v~~~~ivpDd~~~I~~~l~~~~~~~~~DlV 82 (189) T 1jlj_A 7 ILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGT----ISAYKIVPDEIEEIKETLIDWCDEKELNLI 82 (189) T ss_dssp ------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCE----EEEEEEECSCHHHHHHHHHHHHHTSCCSEE T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCE----EEEEEEECCCHHHHHHHHHHHHHCCCCCEE T ss_conf 0136897228999996868636886878889999999865028967----989999689789999999998752377689 Q ss_pred EEEECCCCCCCEEHHHHHHHHHCCC Q ss_conf 9961135888612899999985796 Q gi|254780368|r 114 IAGKQTTDNESNQTGQMLAALMRWP 138 (249) Q Consensus 114 l~G~~S~D~~~g~v~~~lA~~Lg~p 138 (249) ++--..+=+..-.+|-.+.+.++.. T Consensus 83 iTTGGtg~~~~D~T~ea~~~~~~~~ 107 (189) T 1jlj_A 83 LTTGGTGFAPRDVTPEATKEVIERE 107 (189) T ss_dssp EEESCCSSSTTCCHHHHHHHHCSEE T ss_pred EECCCCCCCCCCCCHHHHHHCCCEE T ss_conf 9767556677885987864215534 No 72 >2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Probab=31.84 E-value=22 Score=14.84 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=42.2 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC Q ss_conf 478899999999986126864999961135888612---------------------------------89999998579 Q gi|254780368|r 91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW 137 (249) Q Consensus 91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~ 137 (249) -.||.-++++|++++...+.+=||.|.-|.|...|. |---+-..||| T Consensus 214 R~dPV~VsRviSAmvNs~DD~GVL~GnWsgdY~~Gt~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgV~~TVlRcLGI 293 (687) T 2q3z_A 214 RSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGI 293 (687) T ss_dssp TTCHHHHHHHHHHTTTCTTTTSSEEECCSSCCTTSCCTTTCCBSHHHHHHHHHTTTCCEEEECHHHHHHHHHHHHHHHTC T ss_pred CCCCEEEEEHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCEEEHHHHHHHHHCCCC T ss_conf 59975874101476467777866863465676788685102585999999987489543421111101211011122688 Q ss_pred CC--EEEEEE Q ss_conf 61--332443 Q gi|254780368|r 138 PQ--ATFVSN 145 (249) Q Consensus 138 p~--vt~v~~ 145 (249) |+ ||+-.+ T Consensus 294 P~RvVTNf~S 303 (687) T 2q3z_A 294 PTRVVTNYNS 303 (687) T ss_dssp CEEEEEEEEE T ss_pred CCEEECCCCC T ss_conf 5302335554 No 73 >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Probab=31.44 E-value=23 Score=14.69 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHH--HHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEE Q ss_conf 89999999998612686499996113588861289999--9985796133244334328659999835896799996 Q gi|254780368|r 94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQML--AALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMET 168 (249) Q Consensus 94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~l--A~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~ 168 (249) ....|.-|+.-+++.|++..+= |. ..-.|-.. |..+|+|+.--|-.=+++++.++++....+-.+++.+ T Consensus 380 ~~~~A~~l~~~L~~~gi~V~~D-----dr-~~~~G~k~~~ad~iG~P~~IiVG~~ele~g~Vtvr~R~t~eq~~v~i 450 (458) T 2i4l_A 380 TDAACDQLYRELSAKGVDVLYD-----DT-DQRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENLAL 450 (458) T ss_dssp HHHHHHHHHHHHHHTTCCEEEE-----CS-SCCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTCCEEEEET T ss_pred HHHHHHHHHHHHHHCCCEEEEE-----CC-CCCHHHHHHHHHHCCCCEEEEECCCHHHCCEEEEEECCCCCEEEEEH T ss_conf 9999999999999789999998-----99-99988999999976999899991883668999999998995688669 No 74 >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, GMP reductase domain, structural genomics; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Probab=31.12 E-value=24 Score=14.65 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=14.0 Q ss_pred CCCEECCCHHHHH-HHHHHHHHHCC Q ss_conf 8773326013689-99999998559 Q gi|254780368|r 30 NTKISMNPFDEIA-LEESLQLREKG 53 (249) Q Consensus 30 ~~~~~in~~D~~A-lE~Al~lke~~ 53 (249) .+|.+..|.|-.+ -|.|..+.+.+ T Consensus 67 ~iPIi~ApMd~Vt~~~mAiA~a~~G 91 (393) T 2qr6_A 67 DLPFMNHPSDALASPEFVIEMGKQG 91 (393) T ss_dssp SSSEEECCCTTTCCHHHHHHHHHTT T ss_pred CCCEEECCCCCCCCHHHHHHHHHCC T ss_conf 8847988876567899999999779 No 75 >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} Probab=30.85 E-value=24 Score=14.62 Aligned_cols=12 Identities=0% Similarity=0.055 Sum_probs=6.5 Q ss_pred CEEEEEEECCCC Q ss_conf 659999835896 Q gi|254780368|r 151 NHAIVTREVGHG 162 (249) Q Consensus 151 ~~~~v~r~~e~g 162 (249) +.+.+++-+++. T Consensus 199 ~~vlvEk~l~g~ 210 (446) T 3ouz_A 199 GTMYMEKYIQNP 210 (446) T ss_dssp CCEEEEECCSSC T ss_pred CCEEEEEECCCC T ss_conf 878999825998 No 76 >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5} Probab=30.74 E-value=24 Score=14.61 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=6.3 Q ss_pred CCHHHHHHHHH Q ss_conf 79999999999 Q gi|254780368|r 233 YSTTKLIEILK 243 (249) Q Consensus 233 e~~~eLv~~L~ 243 (249) +-++++++.|+ T Consensus 152 eiv~~Il~~L~ 162 (168) T 2pt5_A 152 EVVKEILLSLE 162 (168) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 77 >3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B Probab=30.64 E-value=24 Score=14.60 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 68999999998559985289999714101588888785077762376336547889999999998612686499996113 Q gi|254780368|r 40 EIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQT 119 (249) Q Consensus 40 ~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S 119 (249) .+++-.+--|.+. .|-+|+.+..-.......+|.....-.+++ ++.+ |.+. +.+.+++.++||||. T Consensus 290 ~~~~~l~~fl~~E-lG~~vv~~gt~~~~~~~~~r~~~~~~~~e~-~~~~----D~~e----ie~~i~~~~pdliiG---- 355 (525) T 3aek_B 290 THVIAAARIAAKE-VGFEVVGMGCYNREMARPLRTAAAEYGLEA-LITD----DYLE----VEKAIEAAAPELILG---- 355 (525) T ss_dssp HHHHHHHHHHHHT-TCCEEEEEEESCGGGHHHHHHHHHHTTCCC-EECS----CHHH----HHHHHHHHCCSEEEE---- T ss_pred HHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHHHCCCEE-EECC----CHHH----HHHHHHHCCCCEEEE---- T ss_conf 6799999999996-698799934786115799997655329747-9659----9999----999986469999997---- Q ss_pred CCCCCEEHHHHHHHHHCCCCE Q ss_conf 588861289999998579613 Q gi|254780368|r 120 TDNESNQTGQMLAALMRWPQA 140 (249) Q Consensus 120 ~D~~~g~v~~~lA~~Lg~p~v 140 (249) ++.+-.+|..||+||+ T Consensus 356 -----ss~er~iA~klgiP~~ 371 (525) T 3aek_B 356 -----TQMERNIAKKLGLPCA 371 (525) T ss_dssp -----CHHHHHHHHHHTCCEE T ss_pred -----CCHHHHHHHHHCCCEE T ss_conf -----8178999998499989 No 78 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=29.74 E-value=25 Score=14.50 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=76.6 Q ss_pred EEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHH---HHHCCCCCCEEEEE--ECCCH-----------H Q ss_conf 98603038876059807888163248773326013689999999---98559985289999--71410-----------1 Q gi|254780368|r 5 VPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQ---LREKGIATEVIVVS--IGSCK-----------V 68 (249) Q Consensus 5 V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~---lke~~~g~~V~~ls--vG~~~-----------~ 68 (249) +.+|+-||-+..+++..+-.+=+-=-+....+|.+++-+|.-+- +|+. +..+|+++. +|..+ + T Consensus 30 ~~~~~F~dGE~~v~i~e~vrg~dV~iiqs~~~~~nd~lmelll~i~alr~~-~A~~It~ViPYl~YaRQDr~~~~ge~is 108 (326) T 2h06_A 30 VVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIA-SASRVTAVIPCFPYARQDKKDKSRAPIS 108 (326) T ss_dssp EEEEECSSSCEEEEECSCCBTCEEEEECCCCSCHHHHHHHHHHHHHHHHTT-TBSEEEEEESSCTTTTCCSCSSSSCCCH T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCCCEE T ss_conf 288988999778887998789858999589999466899999988888756-8872899987313431331337988653 Q ss_pred HHHHHHHH-HHCCCCCEEEECCC----C-----CCHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCEEHHHHHHHHH Q ss_conf 58888878-50777623763365----4-----788999999999861268---64999961135888612899999985 Q gi|254780368|r 69 EEVLKNSL-AMGADRGILIESNE----T-----LEPLSIAKILREIVKKEN---PIIVIAGKQTTDNESNQTGQMLAALM 135 (249) Q Consensus 69 ~~~Lr~al-AmGaD~ai~i~d~~----~-----~D~~~~A~~La~~i~~~~---~DLIl~G~~S~D~~~g~v~~~lA~~L 135 (249) ...+-+.| ++|+|+.+.++-.. + .+.......+..++.... .++++. |.|.++-.-.-.+|..| T Consensus 109 ak~va~lL~~~G~d~vit~DlH~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv---sPD~Ga~kra~~~a~~l 185 (326) T 2h06_A 109 AKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIV---SPDAGGAKRVTSIADRL 185 (326) T ss_dssp HHHHHHHHHHHTCCEEEEESCSSGGGGGGCSSCEEEECSHHHHHHHHHTTCTTGGGCEEE---ESSGGGHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEE---CCCCCHHHHHHHHHHHH T ss_conf 999999998708997999648879984215898653215403456788742576677698---67955799999999982 Q ss_pred CCCCEE Q ss_conf 796133 Q gi|254780368|r 136 RWPQAT 141 (249) Q Consensus 136 g~p~vt 141 (249) |.|+.. T Consensus 186 ~~~~~~ 191 (326) T 2h06_A 186 NVDFAL 191 (326) T ss_dssp TCEEEE T ss_pred CCCEEE T ss_conf 897434 No 79 >3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus} Probab=29.53 E-value=25 Score=14.48 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=37.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 260136899999999855998528999971410158888878507776237633654788999999999861 Q gi|254780368|r 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVK 106 (249) Q Consensus 35 in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~ 106 (249) +|-.+...+|..-+||+......|.++|. ....+..++++..||+. |+.. ..++-..-.+|.++.+ T Consensus 57 i~mP~~~G~e~~~~ir~~~~~~~vI~lT~--~~~~~~~~~a~~~Ga~~-yl~K---p~~~~~L~~~I~~v~~ 122 (133) T 3b2n_A 57 IEMPGMTGLEVLAEIRKKHLNIKVIIVTT--FKRPGYFEKAVVNDVDA-YVLK---ERSIEELVETINKVNN 122 (133) T ss_dssp SSCSSSCHHHHHHHHHHTTCSCEEEEEES--CCCHHHHHHHHHTTCSE-EEET---TSCHHHHHHHHHHHHC T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHHCCCCE-EEEC---CCCHHHHHHHHHHHHH T ss_conf 77899988999999998689996899967--89999999999879978-9979---9999999999999997 No 80 >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Probab=29.48 E-value=25 Score=14.47 Aligned_cols=42 Identities=2% Similarity=0.009 Sum_probs=16.6 Q ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEEEECC Q ss_conf 07776237633654788999999999861268---6499996113 Q gi|254780368|r 78 MGADRGILIESNETLEPLSIAKILREIVKKEN---PIIVIAGKQT 119 (249) Q Consensus 78 mGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~---~DLIl~G~~S 119 (249) +|...+.-..-..+.-.+..+-.+|...-..+ .-||+++... T Consensus 98 lgl~~~~~~di~~~C~g~~~al~~A~~~~~~g~~~~~Lvv~~e~~ 142 (331) T 2x3e_A 98 LGLVGALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTF 142 (331) T ss_dssp TTCTTSEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECG T ss_pred HCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 557984101177567889999998751653488766999983144 No 81 >2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413} Probab=29.03 E-value=26 Score=14.43 Aligned_cols=45 Identities=18% Similarity=0.030 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEE Q ss_conf 89999999998612686499996113588861289999998579613324433 Q gi|254780368|r 94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNI 146 (249) Q Consensus 94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i 146 (249) -..|+..|.+++++.|++.-|.+ |||+|-+++.. |+|.=+.+.++ T Consensus 166 K~tTal~l~~~l~~~G~~a~fia-------TGQTGili~g~-Gv~iDav~~DF 210 (349) T 2obn_A 166 KMSTSLELHWAAKLRGWRSKFLA-------TGQTGVMLEGD-GVALDAVRVDF 210 (349) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEC-------CSHHHHHHHSC-SCCGGGSBHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEE-------CCCEEEEECCC-CEECCCHHHHH T ss_conf 78999999999997799746997-------27605652267-40105306777 No 82 >1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Probab=28.95 E-value=26 Score=14.42 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=45.1 Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEE---------------------------------HHHHHHHHHCC Q ss_conf 478899999999986126864999961135888612---------------------------------89999998579 Q gi|254780368|r 91 TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQ---------------------------------TGQMLAALMRW 137 (249) Q Consensus 91 ~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~---------------------------------v~~~lA~~Lg~ 137 (249) -.||.-++++|++++...+.+=||.|.-|.|...|. |---+-..||| T Consensus 209 R~dPv~V~Rv~SamvNs~dd~GVL~GnWsg~y~~G~~P~~W~GSv~IL~q~~~~~~~PVkYGQCWVFAgv~~TvlR~LGI 288 (692) T 1vjj_A 209 RNDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWNGSVEILKNWKKSGLSPVRYGQCWVFAGTLNTALRSLGI 288 (692) T ss_dssp GGCHHHHHHHHHHHTBCTTTTCSEEECCSSCCTTSCCGGGCCBSHHHHHHHHHTTSCCEEEECHHHHHHHHHHHHHHHTC T ss_pred CCCCEEEEEEEHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 59966873320444066888866852465776788785212585999999997399644300344667778888874478 Q ss_pred CC--EEEEEEEEECCCEEEEE Q ss_conf 61--33244334328659999 Q gi|254780368|r 138 PQ--ATFVSNIKIIDNHAIVT 156 (249) Q Consensus 138 p~--vt~v~~i~~~~~~~~v~ 156 (249) |+ ||+-.+-.=.++.+++. T Consensus 289 P~R~VTnf~SAHDtd~nLtiD 309 (692) T 1vjj_A 289 PSRVITNFNSAHDTDRNLSVD 309 (692) T ss_dssp CEEEEEEEEEEECSSSSSEEE T ss_pred CEEEECCCCCCCCCCCCCEEE T ss_conf 626752556734588871344 No 83 >1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Probab=28.71 E-value=26 Score=14.39 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC Q ss_conf 36899999999855998528999971410158888878507776 Q gi|254780368|r 39 DEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADR 82 (249) Q Consensus 39 D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ 82 (249) +...++..-++++......|.++|. ....+....++..|||. T Consensus 58 ~~~g~~~~~~ir~~~~~~pii~ls~--~~~~~~~~~~l~~Gadd 99 (225) T 1kgs_A 58 VHDGWEILKSMRESGVNTPVLMLTA--LSDVEYRVKGLNMGADD 99 (225) T ss_dssp SSCHHHHHHHHHHTTCCCCEEEEES--SCHHHHHHHTCCCCCSE T ss_pred CCCCCCHHHHHHCCCCCCCEEECCC--CCCHHHHHHHHHCCCCE T ss_conf 5431010122111345675320233--44167899999779985 No 84 >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A Probab=28.39 E-value=26 Score=14.35 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=5.7 Q ss_pred ECCCHHHHH-HHHHH Q ss_conf 714101588-88878 Q gi|254780368|r 63 IGSCKVEEV-LKNSL 76 (249) Q Consensus 63 vG~~~~~~~-Lr~al 76 (249) +|++.+..+ +=+.| T Consensus 13 iG~~GsGKSTvak~L 27 (168) T 1zuh_A 13 IGFMGSGKSSLAQEL 27 (168) T ss_dssp ESCTTSSHHHHHHHH T ss_pred ECCCCCCHHHHHHHH T ss_conf 899999899999999 No 85 >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Probab=27.57 E-value=27 Score=14.26 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=8.4 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9999999999861 Q gi|254780368|r 234 STTKLIEILKSKH 246 (249) Q Consensus 234 ~~~eLv~~L~~e~ 246 (249) ..+++++.|++|. T Consensus 627 ~ldeli~~l~~ei 639 (645) T 1nyr_A 627 EKDEFIWNLVDEI 639 (645) T ss_dssp EHHHHHHHHHHHH T ss_pred EHHHHHHHHHHHH T ss_conf 2999999999999 No 86 >3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Probab=27.34 E-value=27 Score=14.24 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=46.7 Q ss_pred CCCEEEEEECCC-HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH---HHHHHHCCCCCEEEEEECCCCCCCEEHHHH Q ss_conf 852899997141-0158888878507776237633654788999999---999861268649999611358886128999 Q gi|254780368|r 55 ATEVIVVSIGSC-KVEEVLKNSLAMGADRGILIESNETLEPLSIAKI---LREIVKKENPIIVIAGKQTTDNESNQTGQM 130 (249) Q Consensus 55 g~~V~~lsvG~~-~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~---La~~i~~~~~DLIl~G~~S~D~~~g~v~~~ 130 (249) .-++.++.-|.- +......+-+.+-.|-.+.+......-...++.+ ++..+++..||+|+. -.|.++..-+.+ T Consensus 56 ~~~~~li~TGqH~d~~~~~~~~~~i~~d~~l~i~~~~~~~~~~~~~~i~~~~~~~~~~kPD~vlV---~GDr~~~la~al 132 (403) T 3ot5_A 56 TFESTVVITAQHREMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLV---HGDTTTSFAAGL 132 (403) T ss_dssp TEEEEEEECC-----CHHHHHHTTCCCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEE---ETTCHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE---ECCCCHHHHHHH T ss_conf 88879999079978999999861999883343488999999999999999999999739999999---688804899999 Q ss_pred HHHHHCCCCEE Q ss_conf 99985796133 Q gi|254780368|r 131 LAALMRWPQAT 141 (249) Q Consensus 131 lA~~Lg~p~vt 141 (249) .|.++++|.+- T Consensus 133 aa~~~~Ipi~H 143 (403) T 3ot5_A 133 ATFYQQKMLGH 143 (403) T ss_dssp HHHHTTCEEEE T ss_pred HHHHHCCCEEE T ss_conf 99981997899 No 87 >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.07A {Escherichia coli K12} Probab=25.98 E-value=29 Score=14.08 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=28.4 Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC Q ss_conf 9999999855998528999971410158888878507776237633 Q gi|254780368|r 43 LEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIES 88 (249) Q Consensus 43 lE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d 88 (249) ++.|++.. .+..+.++++-+..+-+.+++|+..|.. ++.+++ T Consensus 27 ~~~a~~~~---p~~dlavI~VP~~~v~~~~~ea~~~Gv~-~vi~s~ 68 (480) T 3dmy_A 27 WDSACQKL---PDANLALISVAGEYAAELANQALDRNLN-VMMFSD 68 (480) T ss_dssp HHHHHHHS---TTCCEEEECSCHHHHHHHHHHHHHTTCE-EEECCC T ss_pred HHHHHHCC---CCCCEEEEEECHHHHHHHHHHHHHCCCC-EEEECC T ss_conf 99997337---9999899970889999999999977996-999849 No 88 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=25.96 E-value=29 Score=14.08 Aligned_cols=73 Identities=10% Similarity=0.152 Sum_probs=50.3 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEE Q ss_conf 899999999855998528999971410158888878507776237633654788999999999861268-6499996 Q gi|254780368|r 41 IALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKEN-PIIVIAG 116 (249) Q Consensus 41 ~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~-~DLIl~G 116 (249) .....|.+|.++ |..|.+...-....++...+.-..|..+++.+..|- .|.-.+.+.+..+.++.+ .|+++.- T Consensus 35 IG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~Dv-~~~~~v~~~~~~~~~~~g~iDilVnn 108 (266) T 3o38_A 35 IGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDV-TSTEAVDALITQTVEKAGRLDVLVNN 108 (266) T ss_dssp HHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCT-TCHHHHHHHHHHHHHHHSCCCEEEEC T ss_pred HHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC-CCHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999987--998999979889999999999851798489999158-99999999999999980998599989 No 89 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=25.91 E-value=29 Score=14.07 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHC Q ss_conf 13689999999985599--85289999714101588888785077762376336547889999999998612 Q gi|254780368|r 38 FDEIALEESLQLREKGI--ATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKK 107 (249) Q Consensus 38 ~D~~AlE~Al~lke~~~--g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~ 107 (249) .|..++|..-++|.... ...+.++|- ....+...+++..|++. ++. ...++......+...+++ T Consensus 57 p~~~G~~l~~~ir~~~~~~~~piI~ls~--~~~~~~~~~a~~~Ga~d-yl~---KP~~~~~L~~~i~~~l~r 122 (127) T 2jba_A 57 PGGSGIQFIKHLRRESMTRDIPVVMLTA--RGEEEDRVRGLETGADD-CIT---KPFSPKELVARIKAVMRR 122 (127) T ss_dssp TTEEHHHHHHHHHTSTTTTTSCEEEEEE--TTHHHHHHTTCCCSCSE-EEE---ESCCHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEC--CCCHHHHHHHHHCCCCE-EEE---CCCCHHHHHHHHHHHHHH T ss_conf 9962899999998478779990999989--89999999999849858-771---999999999999999815 No 90 >1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 1g20_A* 1g21_A* 3k1a_A* 1fp4_A* 1qgu_A* 1qh1_A* 1qh8_A* 1h1l_A* Probab=25.62 E-value=29 Score=14.04 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=47.3 Q ss_pred HHHHHHH-HHHCCCCCC-EEEEEECCC-----HHHHHHHHHHH-HCCCCCEEEECCCCC-CHH----HHH-HHHHH-HHH Q ss_conf 9999999-985599852-899997141-----01588888785-077762376336547-889----999-99999-861 Q gi|254780368|r 42 ALEESLQ-LREKGIATE-VIVVSIGSC-----KVEEVLKNSLA-MGADRGILIESNETL-EPL----SIA-KILRE-IVK 106 (249) Q Consensus 42 AlE~Al~-lke~~~g~~-V~~lsvG~~-----~~~~~Lr~alA-mGaD~ai~i~d~~~~-D~~----~~A-~~La~-~i~ 106 (249) -|+++++ +.+....-+ +.++|=.+. +.+...|++-. .| ...+.+...... .++ ..| ..|.. .+. T Consensus 129 kL~~aI~e~~~~~~~p~~I~V~sTC~~~lIGDDi~av~~~~~~~~g-~pVi~v~t~GF~g~s~~~G~~~a~~al~~~~~~ 207 (491) T 1m1n_A 129 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELS-KTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLG 207 (491) T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHHTCCHHHHHHHHHHHHT-CCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHC-CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 9999999999847999889997787798853799999999888739-838999789867763048999999999998500 Q ss_pred C---------CCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE Q ss_conf 2---------686499996113588861289999998579613324 Q gi|254780368|r 107 K---------ENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV 143 (249) Q Consensus 107 ~---------~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v 143 (249) + ..+++-+.|.....++...+-.++. .+|+..++.. T Consensus 208 ~~~~~~~~~~~~~~VNiiG~~~~~gd~~ei~~lL~-~~Gi~v~~~~ 252 (491) T 1m1n_A 208 KRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLE-EMGLRCVAQW 252 (491) T ss_dssp TTTTCCCSCCCTTEEEEEEECCBTTTTHHHHHHHH-HTTCEEEEEE T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHH-HCCCCEEEEC T ss_conf 45766666777873000587787557999999999-7599759987 No 91 >2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein structure initiative; 1.90A {Agrobacterium tumefaciens str} Probab=25.44 E-value=30 Score=14.02 Aligned_cols=164 Identities=13% Similarity=0.043 Sum_probs=84.3 Q ss_pred CCCEECCCHHHHHHHHHHHHHHCCCCCCE-EEEEECC-------------------CHHHHHHHHHHHHCCCCCEEEECC Q ss_conf 87733260136899999999855998528-9999714-------------------101588888785077762376336 Q gi|254780368|r 30 NTKISMNPFDEIALEESLQLREKGIATEV-IVVSIGS-------------------CKVEEVLKNSLAMGADRGILIESN 89 (249) Q Consensus 30 ~~~~~in~~D~~AlE~Al~lke~~~g~~V-~~lsvG~-------------------~~~~~~Lr~alAmGaD~ai~i~d~ 89 (249) .+.+.+.||..++-+.|...++++ -|| .-+-|=| .+....|+.+|+.-. .++=+... T Consensus 56 pvT~Ai~P~~~~~~~~a~~ar~~G--~EvllhlPMep~~~~~~~~gp~~L~~~~~~~~i~~~l~~~l~~vP-~avGvnNh 132 (261) T 2qv5_A 56 EVTLGFAASGNSLQRWMQDARREG--HEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKIT-NYTGVMNY 132 (261) T ss_dssp TSEEEEETTCSSHHHHHHHHHHHT--CCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCC-CCSEEEEE T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECC T ss_conf 737998789977799999999779--879997666766888788885545667889999999999998698-62998346 Q ss_pred C----CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEE Q ss_conf 5----478899999999986126864999961135888612899999985796133244334328659999835896799 Q gi|254780368|r 90 E----TLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMT 165 (249) Q Consensus 90 ~----~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~ 165 (249) - ..|.-.- +.+-+.+++.| |.|.-..++ ...+...+|..+|+|+...=..|+-+.+.-.+.|.+..-... T Consensus 133 mGS~~t~~~~~m-~~v~~~l~~~g--L~fvDS~T~---~~Sva~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~ 206 (261) T 2qv5_A 133 LGGRFLAEQSAL-EPVMRDIGKRG--LLFLDDGSS---AQSLSGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLERI 206 (261) T ss_dssp ECTTGGGCHHHH-HHHHHHHHHTT--CEEEECSCC---TTCCHHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHHH T ss_pred CCCHHHCCHHHH-HHHHHHHHHCC--CEEEECCCC---CCCHHHHHHHHCCCCEEEECEECCCCCCHHHHHHHHHHHHHH T ss_conf 552012698999-99999998779--889946998---774899999975998654024258999999999999999999 Q ss_pred EEECCCEEEEEECCCCCCCCCCHHHHHHH----HHCCCCEECHHHH Q ss_conf 99639889998435565454698889988----5216612049890 Q gi|254780368|r 166 METPLPAVITVDLNLNEPRYISLPNIIKA----RKKRIEKKKATDF 207 (249) Q Consensus 166 v~~~lPavisv~~~~n~PR~psl~~im~A----~kk~i~~~~~~dl 207 (249) -+-..-| |.+. .||--++..+.+- +.+.|+.+.+++| T Consensus 207 A~~~G~a-I~Ig----hp~p~Tl~~L~~w~~~l~~~gi~lVpvS~L 247 (261) T 2qv5_A 207 ARRNGQA-IGVA----SAFDESIAAISKWSREAGGRGIEIVGVSAL 247 (261) T ss_dssp HHHHSEE-EEEE----ECCHHHHHHHHHHHHHGGGGTEEECCHHHH T ss_pred HHHCCCE-EEEE----CCCHHHHHHHHHHHHHHHHCCEEEEEHHHH T ss_conf 9875958-9997----899899999999716777688699988997 No 92 >1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A Probab=25.03 E-value=30 Score=13.97 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=40.7 Q ss_pred HHHHHHHCCCCCCEEEEEECC-CHHHHHHHHHH-HHCCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 999998559985289999714-10158888878-5077762376336--5478899999999986126864999961135 Q gi|254780368|r 45 ESLQLREKGIATEVIVVSIGS-CKVEEVLKNSL-AMGADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTT 120 (249) Q Consensus 45 ~Al~lke~~~g~~V~~lsvG~-~~~~~~Lr~al-AmGaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~ 120 (249) .+-.|++. +..+..+-..| .++.++..-.. ++|....+.+.++ ...++......|.....+..-.++++|.+ T Consensus 34 l~~~L~~~--~~~~d~v~sSp~~Ra~qTae~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~vlvVgH~-- 109 (161) T 1ujc_A 34 MANWLKGQ--KVEIERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHL-- 109 (161) T ss_dssp HHHHHHHT--TCCCCEEEECSSHHHHHHHHHHHHHSCCCSCCEECGGGSTTCCHHHHHHHHHHHHHHTCCEEEEEECT-- T ss_pred HHHHHHHC--CCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-- T ss_conf 99999856--99989898588578999999999983998321035423789999999999997410479769999569-- Q ss_pred CCCCEEHHHHHHHHHC Q ss_conf 8886128999999857 Q gi|254780368|r 121 DNESNQTGQMLAALMR 136 (249) Q Consensus 121 D~~~g~v~~~lA~~Lg 136 (249) ..++.++..+++ T Consensus 110 ----p~l~~l~~~l~~ 121 (161) T 1ujc_A 110 ----PLVGYLVAELCP 121 (161) T ss_dssp ----THHHHHHHHHST T ss_pred ----CHHHHHHHHHHC T ss_conf ----569999999828 No 93 >2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=24.94 E-value=30 Score=13.96 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHHCC--CCCEEEEEECCCCCCCEEHHHHHHHHHCCC Q ss_conf 99999999986126--864999961135888612899999985796 Q gi|254780368|r 95 LSIAKILREIVKKE--NPIIVIAGKQTTDNESNQTGQMLAALMRWP 138 (249) Q Consensus 95 ~~~A~~La~~i~~~--~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p 138 (249) ..-|+.+++.+++. .||.|+| |.-..+-|+...++..++.+ T Consensus 38 ~~qa~~~~~~l~~~~~~~d~i~~---Sp~~Ra~qTa~~i~~~~~~~ 80 (173) T 2rfl_A 38 FAEAEIIADLAADRRYRPDLILS---STAARCRQTTQAWQRAFNEG 80 (173) T ss_dssp HHHHHHHHHHHHHHTCCCSEEEE---CSSHHHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHCCCCCCEEEE---CCCHHHHHHHHHHHHHCCCC T ss_conf 99999999999965999788995---63457788768888633568 No 94 >1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B Probab=24.79 E-value=31 Score=13.94 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=28.9 Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHC Q ss_conf 88999999999861268649999611358886128999999857 Q gi|254780368|r 93 EPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMR 136 (249) Q Consensus 93 D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg 136 (249) |.......+..++...++|+|+++-.++-+..-.++-.+.+..+ T Consensus 53 d~~~~~~~l~~~~~~~~~dlIiTtGGtg~g~~D~t~ea~~~~~~ 96 (172) T 1mkz_A 53 NRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD 96 (172) T ss_dssp CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHGGGCS T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCHHHHHHHHH T ss_conf 57999999999876256761585253134777667999988666 No 95 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=23.96 E-value=32 Score=13.84 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=48.4 Q ss_pred CCHHHHHH---HHHHHHHC---CCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCEEE Q ss_conf 78899999---99998612---6864999961135888612899999985796133244334328659999835896799 Q gi|254780368|r 92 LEPLSIAK---ILREIVKK---ENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMT 165 (249) Q Consensus 92 ~D~~~~A~---~La~~i~~---~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~ 165 (249) .||..... .++..++. .++|.|++ - +...=..++.+|..||.|++-.=.+-..-+..+......+.|..+ T Consensus 34 ~dp~~~~~~~~~l~~~~~~~~~~~~D~Ivg-i---e~~Gi~la~~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~~~~~~~ 109 (180) T 1zn8_A 34 KDPASFRAAIGLLARHLKATHGGRIDYIAG-L---DSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAE 109 (180) T ss_dssp HSHHHHHHHHHHHHHHHHHHHTTCCCEEEE-E---TTTHHHHHHHHHHHHTCEEEEEEETTCCCSSEEEEEEEETTEEEE T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEE-E---CCCCEEEHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEECCCC T ss_conf 199999999999999998745678889998-2---566436016889972998289996687888617999986645640 Q ss_pred EEECC Q ss_conf 99639 Q gi|254780368|r 166 METPL 170 (249) Q Consensus 166 v~~~l 170 (249) .++.. T Consensus 110 ~~~~~ 114 (180) T 1zn8_A 110 LEIQK 114 (180) T ss_dssp EEEET T ss_pred EEEEC T ss_conf 68850 No 96 >1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Probab=23.89 E-value=32 Score=13.83 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=48.7 Q ss_pred EEEEECCCHHHHHHHHH----HHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHH Q ss_conf 99997141015888887----85077762376336547889999999998612686499996113588861289999998 Q gi|254780368|r 59 IVVSIGSCKVEEVLKNS----LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL 134 (249) Q Consensus 59 ~~lsvG~~~~~~~Lr~a----lAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~ 134 (249) +++-||..+.....+++ =.+|..--++|.. +-..+.-+-+.+ ...++.++++|++|. +.++++|+.+|.+ T Consensus 16 V~Ii~GS~SD~~~~~~a~~~L~~~Gi~~e~~V~S-aHR~p~~l~~~~-~~~~~~~~~ViIa~A----G~aaaLpgvvA~~ 89 (183) T 1o4v_A 16 VGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVS-AHRTPDRMFEYA-KNAEERGIEVIIAGA----GGAAHLPGMVASI 89 (183) T ss_dssp EEEEESCGGGHHHHHHHHHHHHHTTCEEEEEECC-TTTCHHHHHHHH-HHTTTTTCCEEEEEE----ESSCCHHHHHHHH T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEH-HHHCHHHHHHHH-HHHHHCCCEEEEEEC----CCCCCCCCEEEEE T ss_conf 9999685743999999999999829917998743-750938899999-999977985999964----6766887548873 Q ss_pred HCCCCEEEEEE Q ss_conf 57961332443 Q gi|254780368|r 135 MRWPQATFVSN 145 (249) Q Consensus 135 Lg~p~vt~v~~ 145 (249) -.+|-+..=.. T Consensus 90 t~~PVIgVP~~ 100 (183) T 1o4v_A 90 THLPVIGVPVK 100 (183) T ss_dssp CSSCEEEEEEC T ss_pred CCCEEEEECCC T ss_conf 26117861157 No 97 >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Probab=23.63 E-value=18 Score=15.48 Aligned_cols=27 Identities=4% Similarity=-0.059 Sum_probs=12.9 Q ss_pred HCCCCCEEEEEECCCCCCCEEHHHHHH Q ss_conf 126864999961135888612899999 Q gi|254780368|r 106 KKENPIIVIAGKQTTDNESNQTGQMLA 132 (249) Q Consensus 106 ~~~~~DLIl~G~~S~D~~~g~v~~~lA 132 (249) ++..||+|++..+=.|.+.-.+--.+- T Consensus 57 ~~~~~DliilD~~MP~~dG~e~~~~ir 83 (145) T 3kyj_B 57 AQPNVDLILLDIEMPVMDGMEFLRHAK 83 (145) T ss_dssp HCTTCCEEEECTTSCCCTTCHHHHHHH T ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHH T ss_conf 369998999878999999999999998 No 98 >2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI-2, protein structure initiative; 1.80A {Agrobacterium tumefaciens str} Probab=23.44 E-value=16 Score=15.78 Aligned_cols=34 Identities=6% Similarity=0.145 Sum_probs=17.7 Q ss_pred HHHHHHHCCC--CCEEEEEECCCCCCCEEHHHHHHHHHCCCC Q ss_conf 9999861268--649999611358886128999999857961 Q gi|254780368|r 100 ILREIVKKEN--PIIVIAGKQTTDNESNQTGQMLAALMRWPQ 139 (249) Q Consensus 100 ~La~~i~~~~--~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~ 139 (249) ++...+++.. -++++.+- .|..-.+++.+||+|. T Consensus 144 ~l~~i~~~~~~~~~vlVVsH------Ggvi~~l~~~llg~p~ 179 (219) T 2qni_A 144 AVKAVLDRHDARQPIAFVGH------GGVGTLLKCHIEGRGI 179 (219) T ss_dssp HHHHHHHTCCTTSCEEEEEC------HHHHHHHHHHHHTCCC T ss_pred HHHHHHHHHCCCCCEEEEEC------HHHHHHHHHHHCCCCH T ss_conf 99999998427986899977------7999999999819895 No 99 >2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* Probab=23.36 E-value=33 Score=13.77 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=37.9 Q ss_pred E-EEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 8-9999714101588888785077762376336547889999999998612686499996113 Q gi|254780368|r 58 V-IVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQT 119 (249) Q Consensus 58 V-~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~~~D~~~~A~~La~~i~~~~~DLIl~G~~S 119 (249) + .+=.||-..---+|-.+||-|.-..+++.. ...+.-.....+...+++.++.+|+..... T Consensus 266 v~iVEvMGR~aG~LAl~aalA~g~ad~ilIPE-~~~~~~~i~~~i~~~~~~~~~~vIVVaEG~ 327 (487) T 2hig_A 266 VGVVKLMGRDSGFIAAQAAVASAQANICLVPE-NPISEQEVMSLLERRFCHSRSCVIIVAEGF 327 (487) T ss_dssp EEEEEECCSSCCHHHHHHHHHHTCCSEEECTT-SCCCHHHHHHHHHHHTTSCSEEEEEEETTT T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCEEECCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 07999668765489999998628873897788-889999999999998723797549970452 No 100 >2xlt_A Flavin-containing monooxygenase; oxidoreductase, trimethyaminuria; HET: FAD NA0 EPE; 2.20A {Methylophaga aminisulfidivorans} PDB: 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xlr_A* 2xls_A* Probab=22.42 E-value=34 Score=13.65 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=32.6 Q ss_pred CEEEEEEEEEC--CCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHH Q ss_conf 13324433432--865999983589679999639889998435565454698889 Q gi|254780368|r 139 QATFVSNIKII--DNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNI 191 (249) Q Consensus 139 ~vt~v~~i~~~--~~~~~v~r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~i 191 (249) +-+.|.+++.. ++.++++-......+......-+|+.+....+.|++|.++++ T Consensus 127 f~t~V~~V~~~~~~~~w~v~~~~~~~~~~~~~~fD~VvVatG~~~~P~iP~i~G~ 181 (461) T 2xlt_A 127 FNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGF 181 (461) T ss_dssp CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSEECCCCCBTT T ss_pred CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 0678999998489977999983122212579999899966005897778898887 No 101 >2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Probab=22.10 E-value=34 Score=13.61 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=49.0 Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--------CC--CC-----------HHHHHHH Q ss_conf 999999998559985289999714101588888785077762376336--------54--78-----------8999999 Q gi|254780368|r 42 ALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--------ET--LE-----------PLSIAKI 100 (249) Q Consensus 42 AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--------~~--~D-----------~~~~A~~ 100 (249) +++.|-+|.+. |-+|+.++-. ...+.++ +.|.. -+.+... .. .. .+..... T Consensus 24 ~l~la~~L~~~--GH~V~~~t~~--~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (430) T 2iyf_A 24 SLEVIRELVAR--GHRVTYAIPP--VFADKVA---ATGPR-PVLYHSTLPGPDADPEAWGSTLLDNVEPFLNDAIQALPQ 95 (430) T ss_dssp GHHHHHHHHHT--TCEEEEEECG--GGHHHHH---TTSCE-EEECCCCSCCTTSCGGGGCSSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHC--CCEEEEEECC--HHHHHHH---HCCCE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999978--8989999782--1677788---66987-887167787432351345667899999999999999999 Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE Q ss_conf 9998612686499996113588861289999998579613324 Q gi|254780368|r 101 LREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV 143 (249) Q Consensus 101 La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v 143 (249) +.+.++...||+|++-. ....+..+|+.+|+|++... T Consensus 96 l~~~~~~~~pD~vi~~~------~~~~~~~~a~~~~iP~v~~~ 132 (430) T 2iyf_A 96 LADAYADDIPDLVLHDI------TSYPARVLARRWGVPAVSLS 132 (430) T ss_dssp HHHHHTTSCCSEEEEET------TCHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHCCCCEEEEECC------CCHHHHHHHHHCCCCEEEEE T ss_conf 99998604983999757------30269999998199989995 No 102 >3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae} Probab=22.05 E-value=15 Score=15.86 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=7.8 Q ss_pred CCCHHHHHHHHHHHHHHC Q ss_conf 260136899999999855 Q gi|254780368|r 35 MNPFDEIALEESLQLREK 52 (249) Q Consensus 35 in~~D~~AlE~Al~lke~ 52 (249) -|..|+-.++.-+.|.++ T Consensus 80 k~~i~~~~l~~L~~La~~ 97 (574) T 3hjb_A 80 KNLVNAETMQHLFALAKE 97 (574) T ss_dssp SSSCCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHH T ss_conf 995899999999999997 No 103 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=22.02 E-value=35 Score=13.60 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=34.6 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC-CCCC--HHHHHHHHHHHHHC Q ss_conf 5289999714101588888785077762376336-5478--89999999998612 Q gi|254780368|r 56 TEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN-ETLE--PLSIAKILREIVKK 107 (249) Q Consensus 56 ~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~-~~~D--~~~~A~~La~~i~~ 107 (249) -.+.++++.++.+.+.+++|...|+.-++.++.- ...+ .....+.|.+..++ T Consensus 65 ~Dlavi~vp~~~v~~~~~e~~~~gv~~~vi~s~Gf~e~~~~g~~~~~~l~~~a~~ 119 (457) T 2csu_A 65 IDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK 119 (457) T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 8989999577888999999997599889971666653222124689999998875 No 104 >3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Marinobacter aquaeolei} Probab=21.94 E-value=35 Score=13.59 Aligned_cols=79 Identities=6% Similarity=0.053 Sum_probs=47.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECC--CCC-CHHHHHHHHHHHHHCCCCCEEE Q ss_conf 1368999999998559985289999714101588888785077762376336--547-8899999999986126864999 Q gi|254780368|r 38 FDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESN--ETL-EPLSIAKILREIVKKENPIIVI 114 (249) Q Consensus 38 ~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~--~~~-D~~~~A~~La~~i~~~~~DLIl 114 (249) +.+.-.+.+-+++++....++--+.++++...++++++.+.|+++.+.+--- .+. -...+...+..+-++.+.++.+ T Consensus 20 ~~~~~~~la~~l~~~~~~v~~~fle~~~P~l~~~l~~l~~~g~~~vvvvP~fl~~G~h~~~dip~~~~~~~~~~~~~i~~ 99 (126) T 3lyh_A 20 WCETFEKLAEPTVESIENAAIAYMELAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLRKDVPAMIERLEAEHGVTIRL 99 (126) T ss_dssp HHHHHHHHHHHHHHHSTTCEEEESSSSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHHHHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 99999999999996589847999826899999999999976998799998132566114656999999999846966998 Q ss_pred EE Q ss_conf 96 Q gi|254780368|r 115 AG 116 (249) Q Consensus 115 ~G 116 (249) +. T Consensus 100 ~~ 101 (126) T 3lyh_A 100 AE 101 (126) T ss_dssp CC T ss_pred CC T ss_conf 78 No 105 >3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Probab=21.84 E-value=35 Score=13.57 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=28.2 Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEE Q ss_conf 999861268649999611358886128999999857961332443 Q gi|254780368|r 101 LREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSN 145 (249) Q Consensus 101 La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~ 145 (249) +++.+++-.-=+|+.|......+....--.+++.+++|.++-... T Consensus 27 ~~~li~~akrP~ii~G~g~~~~~~~~~l~~~~~~~~iPv~tt~~~ 71 (170) T 3cf4_G 27 AAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSS 71 (170) T ss_dssp HHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTT T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCC T ss_conf 999999668989994665250669999999999859998987000 No 106 >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor} Probab=21.69 E-value=35 Score=13.55 Aligned_cols=57 Identities=26% Similarity=0.234 Sum_probs=24.4 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC--------CCCHHHH---HHHHHHHHHCCCCCEEEE Q ss_conf 852899997141015888887850777623763365--------4788999---999999861268649999 Q gi|254780368|r 55 ATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNE--------TLEPLSI---AKILREIVKKENPIIVIA 115 (249) Q Consensus 55 g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~--------~~D~~~~---A~~La~~i~~~~~DLIl~ 115 (249) |.+|++++. ..+.+..+..+|||..+-..... ..++... ...+.+.....++|+||- T Consensus 253 G~~vi~~~~----s~~~~~~~~~lGA~~vid~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid 320 (456) T 3krt_A 253 GANPICVVS----SPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFE 320 (456) T ss_dssp TCEEEEEES----SHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEE T ss_pred CCCEEEEEC----CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 991579957----88999999975997999577642000010123440345679999999838998529998 No 107 >3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Probab=21.31 E-value=36 Score=13.51 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=10.4 Q ss_pred HHCCCCCEEEEEECCCCCC Q ss_conf 6126864999961135888 Q gi|254780368|r 105 VKKENPIIVIAGKQTTDNE 123 (249) Q Consensus 105 i~~~~~DLIl~G~~S~D~~ 123 (249) +++..||+||+-.+-.+.+ T Consensus 45 ~~~~~pdlillDi~MP~~d 63 (141) T 3cu5_A 45 ALKHPPNVLLTDVRMPRMD 63 (141) T ss_dssp HTTSCCSEEEEESCCSSSC T ss_pred HHHCCCCEEEEECCCCCCC T ss_conf 9867999899736899999 No 108 >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA synthetase; 2.75A {Thermus thermophilus HB8} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Probab=20.97 E-value=36 Score=13.46 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHH--HHHHHCCCCEEEE---------EEEEECCCEEEEEEECCCC Q ss_conf 8999999999861268649999611358886128999--9998579613324---------4334328659999835896 Q gi|254780368|r 94 PLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQM--LAALMRWPQATFV---------SNIKIIDNHAIVTREVGHG 162 (249) Q Consensus 94 ~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~--lA~~Lg~p~vt~v---------~~i~~~~~~~~v~r~~e~g 162 (249) ....|.-|...+++.|+|.++- |. +...|-. =|+++|+|+.=-| -.-+++++++++++...+- T Consensus 413 ~~~~A~~ly~~L~~~Gi~vllD-----Dr-~~~~G~Kf~dadliGiP~~ivV~~~~l~~~~g~~~~~~~~V~ir~R~t~~ 486 (505) T 1ati_A 413 ITEYAKRLKARLLALGLGRVLY-----ED-TGNIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTME 486 (505) T ss_dssp HHHHHHHHHHHHHTTCSSCEEE-----CC-CSCHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCC T ss_pred HHHHHHHHHHHHHHCCCCEEEE-----CC-CCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC T ss_conf 9999999999999789968998-----89-99978988863652999899995761002457543338869999889983 Q ss_pred EEEEE Q ss_conf 79999 Q gi|254780368|r 163 TMTME 167 (249) Q Consensus 163 ~e~v~ 167 (249) .+++. T Consensus 487 ~~~v~ 491 (505) T 1ati_A 487 QIRLH 491 (505) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 68989 No 109 >2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Probab=20.88 E-value=36 Score=13.45 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=15.6 Q ss_pred CCCCEEEECC-CCCCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 7762376336-547889999999998612686499996 Q gi|254780368|r 80 ADRGILIESN-ETLEPLSIAKILREIVKKENPIIVIAG 116 (249) Q Consensus 80 aD~ai~i~d~-~~~D~~~~A~~La~~i~~~~~DLIl~G 116 (249) ||++|.+... ....++.....|.+++++.++|.|..| T Consensus 49 AD~~~~i~~~~~~~~sYld~e~Ii~ia~~~~~daIhPg 86 (461) T 2dzd_A 49 ADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPG 86 (461) T ss_dssp SSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECC T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEECC T ss_conf 99999918988733222699999999999786999858 No 110 >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Probab=20.47 E-value=37 Score=13.39 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=47.4 Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHH--HHHCCCCEEEEEEEEECCCEEEEEEECCCCEEEEEE Q ss_conf 99999999986126864999961135888612899999--985796133244334328659999835896799996 Q gi|254780368|r 95 LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLA--ALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMET 168 (249) Q Consensus 95 ~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA--~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~e~v~~ 168 (249) ...|+-|...+++.+.+..+ ...|..++.+|-..+ ..+|+|+.--|..=+++++++++++....-.+++.+ T Consensus 354 ~e~a~~l~~~L~~~~i~v~~---~~~d~~~~SiGkr~~~~d~iGiP~~i~v~~~~le~~~VtiR~Rdt~~q~~v~i 426 (454) T 1g5h_A 354 RQVCQGLLNELLENGISVWP---GYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHI 426 (454) T ss_dssp HHHHHHHHHHHHHTTCCEEE---GGGSCCCSCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEET T ss_pred HHHHHHHHHHHHHCCCEEEE---CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEH T ss_conf 99999999999976986773---03556566873999988871899899988885028968999879883588899 No 111 >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Probab=20.46 E-value=37 Score=13.39 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=54.7 Q ss_pred HHHHHHHHHHHHHCCCCCCEEE-EE--ECC----CHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCC Q ss_conf 3689999999985599852899-99--714----1015888887850777623763365-47889999999998612686 Q gi|254780368|r 39 DEIALEESLQLREKGIATEVIV-VS--IGS----CKVEEVLKNSLAMGADRGILIESNE-TLEPLSIAKILREIVKKENP 110 (249) Q Consensus 39 D~~AlE~Al~lke~~~g~~V~~-ls--vG~----~~~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~La~~i~~~~~ 110 (249) |...++.+.....+. |..+.+ ++ .++ ....+..+.+..+|+|+ |.+.|-. .+.|..+...+....+..+. T Consensus 142 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~Gad~-I~l~Dt~G~~~P~~v~~lv~~lk~~~~~ 219 (539) T 1rqb_A 142 DPRNMAHAMAAVKKA-GKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADS-IALKDMAALLKPQPAYDIIKAIKDTYGQ 219 (539) T ss_dssp CTHHHHHHHHHHHHT-TCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSE-EEEEETTCCCCHHHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 999889999999976-99568999955788778999999999987259878-9955866665899999999999986586 Q ss_pred CEEEEEECCC-CCCCEEHHHHHHHHHCCCCE Q ss_conf 4999961135-88861289999998579613 Q gi|254780368|r 111 IIVIAGKQTT-DNESNQTGQMLAALMRWPQA 140 (249) Q Consensus 111 DLIl~G~~S~-D~~~g~v~~~lA~~Lg~p~v 140 (249) ++.+ +-++- |.+.+.--.+-|-..|.-.+ T Consensus 220 ~~~i-~~H~Hnt~Gla~An~laAieaGad~v 249 (539) T 1rqb_A 220 KTQI-NLHCHSTTGVTEVSLMKAIEAGVDVV 249 (539) T ss_dssp TCCE-EEEEBCTTSCHHHHHHHHHHTTCSEE T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHCCCCEE T ss_conf 4432-56634887629999999998599999 No 112 >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Probab=20.39 E-value=37 Score=13.38 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=4.0 Q ss_pred HHHHHHHCCCC Q ss_conf 99999857961 Q gi|254780368|r 129 QMLAALMRWPQ 139 (249) Q Consensus 129 ~~lA~~Lg~p~ 139 (249) ..+|+.||+++ T Consensus 72 ~~~a~~Lgi~~ 82 (268) T 1xng_A 72 LNLCEKFSIPY 82 (268) T ss_dssp HHHHHHHTCCE T ss_pred HHHHHHHHHCC T ss_conf 99999833023 No 113 >2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A* Probab=20.29 E-value=37 Score=13.37 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEE Q ss_conf 99999998612686499996113588861289999998579613324 Q gi|254780368|r 97 IAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV 143 (249) Q Consensus 97 ~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v 143 (249) ..+-||.-++...||+|++ - -.+.--.+.+++..||.|....+ T Consensus 16 ~~~~La~~I~~~~pD~IVg-I---~rGG~i~A~~ls~~L~~~~~~~i 58 (213) T 2jky_A 16 LCQVSAERIKNFKPDLIIA-I---GGGGFIPARILRTFLKEPGVPTI 58 (213) T ss_dssp HHHTTHHHHHHHCCSEEEE-C---SGGGHHHHHHHHHHHCCTTSCCC T ss_pred HHHHHHHHHHCCCCCEEEE-E---CCCCHHHHHHHHHHHCCCCCCCC T ss_conf 9999999975889999999-8---98889999999998523136765 No 114 >3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* Probab=20.10 E-value=18 Score=15.44 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=15.1 Q ss_pred HHHHHHHCCCCCCEEEEEECCCHHH-HHHHHHHH Q ss_conf 9999985599852899997141015-88888785 Q gi|254780368|r 45 ESLQLREKGIATEVIVVSIGSCKVE-EVLKNSLA 77 (249) Q Consensus 45 ~Al~lke~~~g~~V~~lsvG~~~~~-~~Lr~alA 77 (249) .|-++++. ...|+++.+|+.... .++-++|. T Consensus 68 ~a~~i~~~--~~~iV~IGIGGS~LGpkal~~aL~ 99 (446) T 3ff1_A 68 ASKRIKEN--SDVLVVIGIGGSYLGARAAIEMLT 99 (446) T ss_dssp HHHHHHHH--CSEEEEECCGGGTHHHHHHHHHHS T ss_pred HHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHH T ss_conf 99999827--988999935087899999999999 No 115 >1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A Probab=20.06 E-value=20 Score=15.06 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=16.6 Q ss_pred HHHHHHCCCCCCEEEEEECCCHHH-HHHHHHHHH Q ss_conf 999985599852899997141015-888887850 Q gi|254780368|r 46 SLQLREKGIATEVIVVSIGSCKVE-EVLKNSLAM 78 (249) Q Consensus 46 Al~lke~~~g~~V~~lsvG~~~~~-~~Lr~alAm 78 (249) +-+++.. ...|+++.||+.... .++-++|.. T Consensus 65 ~~~i~~~--~~~iV~IGIGGS~LGp~~~~~al~~ 96 (445) T 1b0z_A 65 AERIRNH--SDALVVIGIGGSYLGARAAIEALSH 96 (445) T ss_dssp HHHHHHH--CSEEEEECCGGGTHHHHHHHHHHSC T ss_pred HHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHH T ss_conf 9999845--9889999250766899999999875 Done!