RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein
beta subunit [Candidatus Liberibacter asiaticus str. psy62]
         (249 letters)



>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional.
          Length = 254

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 7/192 (3%)

Query: 19  IKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVE--EVLKNSL 76
           +  + + +  +N +  ++ FD  A+E + QL   G   E+  +++G   ++  +V K+ L
Sbjct: 18  VTPERT-LNFDNAEAKISQFDLNAIEAASQLATDG--DEIAALTVGGSLLQNSKVRKDVL 74

Query: 77  AMGADRGILI--ESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL 134
           + G     L+     E   PL  AK L   ++K    +++ G+ + D  + Q G +L  L
Sbjct: 75  SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGEL 134

Query: 135 MRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKA 194
           ++ P    VS I+   N  IV R +      +E  LPAV+ V  ++N PR  S+  I+ A
Sbjct: 135 LQLPVINAVSKIQRQGNKLIVERTLEDDVEVLELSLPAVLCVTSDINVPRIPSMKAILGA 194

Query: 195 RKKRIEKKKATD 206
            KK + + +A+D
Sbjct: 195 GKKPVTQWQASD 206


>gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA;
           Reviewed.
          Length = 256

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 6/224 (2%)

Query: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
           MKI+   K V +    + + N    ++       ++ +D  A+E + QL+++    +V  
Sbjct: 1   MKIITCYKCVPD-EQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTA 59

Query: 61  VSIGSCKVEEV--LKNSLAMGADRGILI--ESNETLEPLSIAKILREIVKKENPIIVIAG 116
           +S+G   +      K+ L+ G D  I++  +  E   P   A  L    +K    +++ G
Sbjct: 60  LSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCG 119

Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNI-KIIDNHAIVTREVGHGTMTMETPLPAVIT 175
             ++D  + Q G ++  ++  P    VS I  + D+   V RE+     T+  PLPAVI 
Sbjct: 120 DGSSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETLSIPLPAVIA 179

Query: 176 VDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLR 219
           V  ++N P+  S+  I+ A KK ++   A D   +  P     +
Sbjct: 180 VSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQ 223


>gnl|CDD|182929 PRK11053, PRK11053, dihydropteridine reductase; Provisional.
          Length = 217

 Score = 31.9 bits (73), Expect = 0.16
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 35  MNPFDEIALEESLQLREKGIATEVIVVSIG 64
           +  FD   L+    LREKG+ T  +VV +G
Sbjct: 164 IEGFDAAILDAEFGLREKGL-TSSVVVPLG 192


>gnl|CDD|185534 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
          Length = 639

 Score = 27.6 bits (61), Expect = 2.9
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 26  IETENTKISMNPFDEIALEESLQ--LREKGIATEV-----IVVSIGSCKVEEVLKNSLAM 78
           I +EN   S + F E  LEE++   L  KG  + +      ++ + S   +  LKN + +
Sbjct: 129 IVSENHATSPSFFQESLLEENVVSFLGSKGRLSNLKNIHSYIIELFSDITDRELKNYIQL 188

Query: 79  GADRGILIESNETLEP--LSIAKILREIVKKENPIIVIAG 116
              +G LIES++ +    + I  I   + + E+ +I  +G
Sbjct: 189 LESKGALIESDKLVHADEIGICGIKDAVRRGEDRVIWESG 228


>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma.  This
          model represents that clade of F420-dependent
          hydrogenases (FRH) beta subunits found exclusively and
          universally in methanogenic archaea. This protein
          contains two 4Fe-4S cluster binding domains (pfam00037)
          and scores above the trusted cutoff to model pfam01058
          for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
          family.
          Length = 228

 Score = 27.1 bits (60), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)

Query: 39 DEIALEESLQLREKGIATEVIVVSIGSC 66
          DE +LEE  +LREK      +VV++G+C
Sbjct: 64 DEHSLEEIKELREKA----KVVVALGAC 87


>gnl|CDD|179220 PRK01099, rpoK, DNA-directed RNA polymerase subunit K; Provisional.
          Length = 62

 Score = 26.4 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 76  LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVI 114
           ++MGA   +LI+  E+ +PL IA+   E  +   PI V 
Sbjct: 23  ISMGAP--VLIDIPESTDPLDIAEE--EFKRGVLPITVK 57


>gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G.  This model
           represents the G subunit (one of 14: A->N) of the
           NADH-quinone oxidoreductase complex I which generally
           couples NADH and ubiquinone oxidation/reduction in
           bacteria and mammalian mitochondria while translocating
           protons, but may act on NADPH and/or plastoquinone in
           cyanobacteria and plant chloroplasts. This model
           excludes related subunits from formate dehydrogenase
           complexes.
          Length = 603

 Score = 26.2 bits (58), Expect = 8.6
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 80  ADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWP 138
           AD  +L+ ++   E   +   LR+ VKK    + + G +  +        ++      P
Sbjct: 363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLSP 421


>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
           Reviewed.
          Length = 566

 Score = 25.9 bits (57), Expect = 9.7
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 18/83 (21%)

Query: 90  ETLEP--LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIK 147
            TLEP  + I KIL+++ K + P+I +AG      E+       A   + P         
Sbjct: 191 PTLEPNDMQIKKILKQLSKAKKPVI-LAGGGINYAEAATELNAFAERYQIP--------- 240

Query: 148 IIDNHAIVTREVGHGTMTMETPL 170
                 +VT  +G GT+    PL
Sbjct: 241 ------VVTTLLGQGTIATSHPL 257


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,944,693
Number of extensions: 252813
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 26
Length of query: 249
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,028,145
Effective search space: 636446910
Effective search space used: 636446910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)