RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein
beta subunit [Candidatus Liberibacter asiaticus str. psy62]
(249 letters)
>1efp_B ETF, protein (electron transfer flavoprotein); electron
transport, glutaric acidemia type II; HET: FAD AMP;
2.60A {Paracoccus denitrificans} (B:1-223)
Length = 223
Score = 201 bits (512), Expect = 9e-53
Identities = 118/222 (53%), Positives = 163/222 (73%), Gaps = 4/222 (1%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
MK+LVP+K +I+YN K R+K+D SG++ N K+SMNPFDEIA+EE+++L+EKG A E+I
Sbjct: 1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIA 60
Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIES----NETLEPLSIAKILREIVKKENPIIVIAG 116
VSIG + E L+ +LAMGADR IL+ + + +EPL++AKIL + + E ++IAG
Sbjct: 61 VSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG 120
Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
KQ DN+ N TGQMLAA++ W QATF S ++I A VTREV G T+ LPAV+T
Sbjct: 121 KQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTA 180
Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVL 218
DL LNEPRY SLPNI+KA+KK +++K A D+ +D+ PRL+V+
Sbjct: 181 DLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVV 222
>1efv_B Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
(B:1-226)
Length = 226
Score = 191 bits (487), Expect = 6e-50
Identities = 104/222 (46%), Positives = 150/222 (67%), Gaps = 4/222 (1%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
+++LV +K VI+Y K+R+K D +G+ T+ K SMNPF EIA+EE+++L+EK + EVI
Sbjct: 4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63
Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIES----NETLEPLSIAKILREIVKKENPIIVIAG 116
VS G + +E ++ +LAMGADRGI +E E L PL +A++L ++ +KE +V+ G
Sbjct: 64 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123
Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
KQ D++ NQTGQM A + WPQ TF S + + + V RE+ G T+ LPAV+T
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTA 183
Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVL 218
DL LNEPRY +LPNI+KA+KK+IE K D +DLT +L V+
Sbjct: 184 DLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVI 225
>1o97_C Electron transferring flavoprotein beta-subunit; FAD
binding; HET: AMP FAD; 1.6A {Methylophilus
methylotrophus} (C:1-228)
Length = 228
Score = 174 bits (442), Expect = 1e-44
Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREK-GIATEVI 59
MKILV +K I+ D ++ + +N +D+ +LEE+++++E EV+
Sbjct: 1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVV 60
Query: 60 VVSIGSCKVEEVLKNSLAMGADRGILIES--NETLEPLSIAKILREIVKKENPIIVIAGK 117
VVS+G +V+E L+ LA GADR + + E + + + +IL E++KKE P +V AG
Sbjct: 61 VVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGV 120
Query: 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKIIDN--HAIVTREVGHG-TMTMETPLPAVI 174
Q++D TG +A+ + WP A V++++ A++ RE+ G +E PAV+
Sbjct: 121 QSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVL 180
Query: 175 TVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAID 210
T+ L +N+PRY SL I +A K IE+ D +
Sbjct: 181 TIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLS 216
>1efp_A ETF, protein (electron transfer flavoprotein); electron
transport, glutaric acidemia type II; HET: FAD AMP;
2.60A {Paracoccus denitrificans} (A:1-179)
Length = 179
Score = 136 bits (343), Expect = 3e-33
Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 8/179 (4%)
Query: 28 TENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIE 87
E T ++N +++ +V V+ G+ + + G + ++ E
Sbjct: 6 GEVTNGALNRDATAKAVAAVKA-----LGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAE 60
Query: 88 SNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIK 147
L+ + + + A T +AAL+ + VS I
Sbjct: 61 DALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAK---NVMPRVAALLDVMVLSDVSAIL 117
Query: 148 IIDNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATD 206
D + V T+ + + + ++
Sbjct: 118 DADTFERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAAADPGLSSW 176
>3fet_A Electron transfer flavoprotein subunit alpha related
protein; alpha-beta-alpha sandwich, structural genomics,
PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} (A:)
Length = 166
Score = 129 bits (327), Expect = 3e-31
Identities = 22/174 (12%), Positives = 56/174 (32%), Gaps = 18/174 (10%)
Query: 35 MNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEP 94
++ + + + KG + V IG ++ +G+ + +
Sbjct: 9 VSDDXNFLRQVNTLVAGKG---DXDSVIIGE-------GDAKGLGSKVLYRAKKGTPFDA 58
Query: 95 LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAI 154
+ ++ + +I + G + L+ + AT + +++ A
Sbjct: 59 V--SEGILKIAGN--YDYIAIGSTEVGR---EIAGYLSFKTGFYTATEIFSLEFNGQKAH 111
Query: 155 VTREVGHGTMTMETPL-PAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDF 207
R G +E ++TV + E + + I+ + + K T F
Sbjct: 112 TKRFFYGGKTVIEEESDARILTVAPGVIEAKDLGTTPEIRDLEIGQSRIKITKF 165
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD
binding; HET: AMP FAD; 1.6A {Methylophilus
methylotrophus} (D:1-188)
Length = 188
Score = 128 bits (322), Expect = 9e-31
Identities = 27/191 (14%), Positives = 65/191 (34%), Gaps = 17/191 (8%)
Query: 25 GIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGI 84
+ E+ + + P + + L++ G +V+V IGS + + + G D +
Sbjct: 4 LVIAEHRRNDLRPVSLELIGAANGLKKSGED-KVVVAVIGS-QADAFVPALSVNGVDELV 61
Query: 85 LIESNET-LEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFV 143
+++ + +P + ++ NP +V+ LA+ + AT V
Sbjct: 62 VVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSL---GYASSLASKTGYGFATDV 118
Query: 144 SNIKIIDNHAIVTREVGHG----TMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRI 199
++ + + TR + + V+T+ ++ +P A +
Sbjct: 119 YIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLE-------GAGSPVV 171
Query: 200 EKKKATDFAID 210
A
Sbjct: 172 SNVDAPSVQSR 182
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
(A:1-183)
Length = 183
Score = 123 bits (311), Expect = 2e-29
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 16/185 (8%)
Query: 28 TENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIE 87
E+ S+ P + + +L EV + G+ + G + ++ +
Sbjct: 8 AEHANDSLAPITLNTITAATRLGG-----EVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQ 62
Query: 88 SN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSN 145
+ + L P + ++ K+ N + AG +AA + + +
Sbjct: 63 HDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGK---NLLPRVAAKLEVAPISDIIA 119
Query: 146 IKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKAT 205
IK D V +V + S EK +T
Sbjct: 120 IKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATS------GGSASSEKASST 173
Query: 206 DFAID 210
Sbjct: 174 SPVEI 178
>3ih5_A Electron transfer flavoprotein alpha-subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2,
protein structure initiative; 2.60A {Bacteroides
thetaiotaomicron} (A:1-122,A:163-217)
Length = 177
Score = 92.2 bits (229), Expect = 6e-20
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 21 NDYSGI--ETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAM 78
++ + + E + + L + L + + ++ V G+ ++E+ K L
Sbjct: 1 SNANNLFVYCEIEEGIVADVSLELLTKGRSLANE-LNCQLEAVVAGT-GLKEIEKQILPY 58
Query: 79 GADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMR 136
G D+ + ++ L IL + K+E P I + G G +++ +
Sbjct: 59 GVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLXGATVIG---RDLGPRVSSALT 115
Query: 137 WPQATFV 143
Sbjct: 116 SGLTADC 122
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D
subunit); transcription factor, IKB/NFKB complex; 2.30A
{Homo sapiens} (D:)
Length = 236
Score = 31.1 bits (68), Expect = 0.14
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 69 EEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKE 108
+ + + + ++ +E E E + E
Sbjct: 197 TRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTEDE 236
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 29.1 bits (65), Expect = 0.55
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 41/96 (42%)
Query: 154 IVT--REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKA------- 204
I+T RE H ++ +P LN +K RK+++ ++A
Sbjct: 6 ILTTAREH-HSSVKYASPN---------LN----------MKYRKRQLVTREAQIKDWVE 45
Query: 205 -----TDFAIDLTP-------RLKVLRFEENRAERK 228
+ P L+ R N AE +
Sbjct: 46 NELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQ 81
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} (o:56-188)
Length = 133
Score = 28.9 bits (65), Expect = 0.71
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 94 PLSIAKILREIVK--KENPIIVIAGKQTTDNESNQTGQMLAALMRW 137
PLS+++++R++ +EN V+ G T D + ++ +R
Sbjct: 5 PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRV 50
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2,
protein structure initiative; 1.50A {Saccharomyces
cerevisiae YJM789} (A:)
Length = 401
Score = 28.4 bits (62), Expect = 1.1
Identities = 5/44 (11%), Positives = 11/44 (25%), Gaps = 4/44 (9%)
Query: 135 MRWPQATFVSNIKIIDNHA----IVTREVGHGTMTMETPLPAVI 174
M S +K D + + +G ++
Sbjct: 1 MSLTSTATDSPLKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLL 44
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 kDa
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} (F:)
Length = 155
Score = 27.6 bits (61), Expect = 1.5
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 75 SLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVI 114
++M A + ++ +PL IA +E+ +K+ P+++
Sbjct: 100 QISMNAP--VFVDLEGETDPLRIAM--KELAEKKIPLVIR 135
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase;
2.60A {Pyrococcus abyssi} (A:1-121)
Length = 121
Score = 27.5 bits (61), Expect = 1.7
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 43 LEESLQLREKGIATEVIVVSIGSCKVEEV--LKNSLAMG-------ADRGILIESNETLE 93
EE +L + +V CKV K+ L G D LI N+ E
Sbjct: 12 EEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNKKRE 71
Query: 94 PL 95
P+
Sbjct: 72 PV 73
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} (A:)
Length = 127
Score = 26.7 bits (59), Expect = 3.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 75 SLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVI 114
+AM A +++E +PL IA +E+ ++ PII+
Sbjct: 72 QIAMCAP--VMVELEGETDPLLIAM--KELKARKIPIIIR 107
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5,
structural genomics, NPPSFA, national project on protein
structural and functional analyses; HET: TLA; 1.75A
{Aquifex aeolicus} PDB: 2ysw_A (A:)
Length = 219
Score = 26.4 bits (58), Expect = 3.5
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 59 IVVSIGSCKVEEVLKNSLAMGADRGILIE----SNETLEPLSIAKILREIVKKENPIIV 113
I V + E LK + GAD ++E + + L E+ + I+
Sbjct: 3 IAVPLDDTNFSENLKKAKEKGAD---IVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe} (F:)
Length = 142
Score = 26.4 bits (58), Expect = 4.1
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 76 LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVI 114
++M A +L++ +PL IA +E+ +K+ P++V
Sbjct: 91 ISMNAP--VLVDLEGETDPLQIAM--KELAQKKIPLLVR 125
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.133 0.359
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,734,022
Number of extensions: 75374
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 22
Length of query: 249
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 163
Effective length of database: 2,048,819
Effective search space: 333957497
Effective search space used: 333957497
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)