RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein
beta subunit [Candidatus Liberibacter asiaticus str. psy62]
         (249 letters)



>1efv_B Electron transfer flavoprotein; electron transport, glutaric
           acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
           SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
          Length = 255

 Score =  266 bits (682), Expect = 3e-72
 Identities = 110/247 (44%), Positives = 162/247 (65%), Gaps = 4/247 (1%)

Query: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
           +++LV +K VI+Y  K+R+K D +G+ T+  K SMNPF EIA+EE+++L+EK +  EVI 
Sbjct: 4   LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63

Query: 61  VSIGSCKVEEVLKNSLAMGADRGILIE----SNETLEPLSIAKILREIVKKENPIIVIAG 116
           VS G  + +E ++ +LAMGADRGI +E      E L PL +A++L ++ +KE   +V+ G
Sbjct: 64  VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123

Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
           KQ  D++ NQTGQM A  + WPQ TF S + +  +   V RE+  G  T+   LPAV+T 
Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTA 183

Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236
           DL LNEPRY +LPNI+KA+KK+IE  K  D  +DLT +L V+  E+      G+++ +T 
Sbjct: 184 DLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTE 243

Query: 237 KLIEILK 243
            L+  LK
Sbjct: 244 DLVAKLK 250


>1efp_B ETF, protein (electron transfer flavoprotein); electron transport,
           glutaric acidemia type II; HET: FAD AMP; 2.60A
           {Paracoccus denitrificans} SCOP: c.26.2.3
          Length = 252

 Score =  265 bits (680), Expect = 5e-72
 Identities = 124/250 (49%), Positives = 175/250 (70%), Gaps = 4/250 (1%)

Query: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
           MK+LVP+K +I+YN K R+K+D SG++  N K+SMNPFDEIA+EE+++L+EKG A E+I 
Sbjct: 1   MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIA 60

Query: 61  VSIGSCKVEEVLKNSLAMGADRGILIES----NETLEPLSIAKILREIVKKENPIIVIAG 116
           VSIG  +  E L+ +LAMGADR IL+ +     + +EPL++AKIL  + + E   ++IAG
Sbjct: 61  VSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG 120

Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
           KQ  DN+ N TGQMLAA++ W QATF S ++I    A VTREV  G  T+   LPAV+T 
Sbjct: 121 KQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTA 180

Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236
           DL LNEPRY SLPNI+KA+KK +++K A D+ +D+ PRL+V+   E    + G+++ S  
Sbjct: 181 DLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVD 240

Query: 237 KLIEILKSKH 246
           +L+  LK   
Sbjct: 241 ELVGKLKEAG 250


>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET:
           AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
           c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C*
           3clt_C* 3clu_C*
          Length = 264

 Score =  202 bits (515), Expect = 5e-53
 Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 16/259 (6%)

Query: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIA-TEVI 59
           MKILV +K          I+ D   ++ +     +N +D+ +LEE+++++E      EV+
Sbjct: 1   MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVV 60

Query: 60  VVSIGSCKVEEVLKNSLAMGADRGILIESNET--LEPLSIAKILREIVKKENPIIVIAGK 117
           VVS+G  +V+E L+  LA GADR + +  +     + + + +IL E++KKE P +V AG 
Sbjct: 61  VVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGV 120

Query: 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKII--DNHAIVTREV-GHGTMTMETPLPAVI 174
           Q++D     TG  +A+ + WP A  V++++    DN A++ RE+ G     +E   PAV+
Sbjct: 121 QSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVL 180

Query: 175 TVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLT------PRLKVLRFEENRAERK 228
           T+ L +N+PRY SL  I +A  K IE+    D  +            +V R       R 
Sbjct: 181 TIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRA 240

Query: 229 GLRLYST----TKLIEILK 243
            +   +      K+I+I+ 
Sbjct: 241 TMIEGTISEQAAKIIQIIN 259


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 59/163 (36%)

Query: 6   PIKGVINYNTKVR-IKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIG 64
           P + +   N  +R  K   SG++   ++I   PF E  L+ S +            + + 
Sbjct: 382 PPQSLYGLNLTLRKAKAP-SGLDQ--SRI---PFSERKLKFSNRF-----------LPVA 424

Query: 65  S-------CKVEEVLKNSLAMGADRGILIESNETLEPLSI-------AKILREIVKKEN- 109
           S           +++   L       +   + +    + I          LR +    + 
Sbjct: 425 SPFHSHLLVPASDLINKDLV---KNNVSFNAKD----IQIPVYDTFDGSDLRVL--SGSI 475

Query: 110 -PIIVIAGKQTTDNESNQTGQMLAALM-RWPQATFVSNIKIID 150
              IV                 +  L  +W   T      I+D
Sbjct: 476 SERIV---------------DCIIRLPVKWETTTQFKATHILD 503



 Score = 28.4 bits (63), Expect = 1.7
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 14/52 (26%)

Query: 10   VINYNTKVRIKN-------DYSGIETENTK---ISMNPFDEIALEESLQLRE 51
            ++NYN    ++N       D   ++T       I +   D I L++SL L E
Sbjct: 1843 IVNYN----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890


>3fet_A Electron transfer flavoprotein subunit alpha related protein;
           alpha-beta-alpha sandwich, structural genomics, PSI-2;
           HET: MSE; 2.05A {Thermoplasma acidophilum}
          Length = 166

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 57  EVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAG 116
           ++  V IG         ++  +G+      +     +   +++ + +I    N   +  G
Sbjct: 28  DMDSVIIGE-------GDAKGLGSKVLYRAKKGTPFDA--VSEGILKIAG--NYDYIAIG 76

Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREV--GHGTMTMETPLPAVI 174
                    +    L+    +  AT + +++     A   R    G   +  E+    ++
Sbjct: 77  STEV---GREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESD-ARIL 132

Query: 175 TVDLNLNEPR 184
           TV   + E +
Sbjct: 133 TVAPGVIEAK 142


>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
           carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
           aureus}
          Length = 451

 Score = 33.7 bits (77), Expect = 0.038
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%)

Query: 40  EIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMG-ADRGILIESNETLE-PLSI 97
           EIA+      R+ GI T V + S       E  K++L    AD    +    + +  L+I
Sbjct: 11  EIAVRIIRACRDLGIQT-VAIYS-------EGDKDALHTQIADEAYCVGPTLSKDSYLNI 62

Query: 98  AKILREIVKKENP--IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIV 155
             IL  I        +    G    + +  +  +        P    +  + I D     
Sbjct: 63  PNIL-SIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121

Query: 156 TREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKA 194
             +     +        +  V       + I  P IIKA
Sbjct: 122 MIKANVPVVPGSD--GLMKDVSEAKKIAKKIGYPVIIKA 158


>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; HET: TLA; 1.75A {Aquifex
           aeolicus} PDB: 2ysw_A
          Length = 219

 Score = 28.8 bits (64), Expect = 1.4
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 59  IVVSIGSCKVEEVLKNSLAMGADRGILIE----SNETLEPLSIAKILREIVKKENPIIV 113
           I V +      E LK +   GAD   ++E             + + L E+  +    I+
Sbjct: 3   IAVPLDDTNFSENLKKAKEKGAD---IVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58


>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A
          {Pyrococcus abyssi}
          Length = 251

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 43 LEESLQLREKGIATEVIVVSIGSCKVEEV--LKNSLAMG-------ADRGILIESNETLE 93
           EE  +L +       +V     CKV      K+ L  G        D   LI  N+  E
Sbjct: 12 EEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNKKRE 71

Query: 94 PL 95
          P+
Sbjct: 72 PV 73


>1ok8_A Major envelope protein E; virus/viral protein, membrane fusion,
           flavivirus, fusion peptide, low-PH conformational
           change, trimer; HET: NAG; 2.0A {Dengue virus type 2}
           SCOP: b.1.18.4 f.10.1.1 PDB: 1oan_A* 1oke_A* 2b6b_A
           1tge_A 1tg8_A* 1thd_A 3c5x_A* 3c6e_A* 3c6d_A 3c6r_A
           3ixy_A 2r6p_A 2jsf_A 2r29_A 2r69_A
          Length = 394

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 16/106 (15%), Positives = 24/106 (22%), Gaps = 38/106 (35%)

Query: 115 AGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREV--------------- 159
           A KQ      +Q G M  AL    +    S   +   H  +   +               
Sbjct: 245 AKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGH--LKCRLRMDKLQLKGMSYSMC 302

Query: 160 -------------GHGTMTME-----TPLP---AVITVDLNLNEPR 184
                         HGT+ +         P       +DL      
Sbjct: 303 TGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVL 348


>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
           domain PILT, protein transport; 1.87A {Aquifex aeolicus}
          Length = 261

 Score = 27.1 bits (59), Expect = 4.1
 Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 91  TLEPLSIAKILREIVKKENPIIVIA-----GKQTTDNESNQTGQMLAALMRWPQATFVSN 145
             + L +   + E+  ++  +I++      GK TT          +A+++ +   T   +
Sbjct: 7   EFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTT----------IASMIDYINQTKSYH 56

Query: 146 IKIIDNHAIVTREVGHGTMTMETPLPAVIT 175
           I  I++      +     +          +
Sbjct: 57  IITIEDPIEYVFKHKKSIVNQREVGEDTKS 86


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 196 KKRIEKKKATD--FAIDLTPRLKV 217
           K+ ++K +A+   +A D  P L +
Sbjct: 19  KQALKKLQASLKLYADDSAPALAI 42



 Score = 26.9 bits (58), Expect = 4.3
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 8/31 (25%)

Query: 69 EEVLKN---SLAMGADR---GILIESNETLE 93
          ++ LK    SL + AD     + I++  T+E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA--TME 47



 Score = 26.9 bits (58), Expect = 4.5
 Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 3/16 (18%)

Query: 222 ENRAERK---GLRLYS 234
           E +A +K    L+LY+
Sbjct: 18  EKQALKKLQASLKLYA 33


>2e6k_A Transketolase; structural genomics, NPPSFA, national project on
           protein structural and functional analyses; 2.09A
           {Thermus thermophilus HB8}
          Length = 651

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 40  EIALEESLQLREKGIATEVIVVSIGSCKV----EEVLKNSLAMGADRGILIESNETL 92
            +AL     LREKG+     VVS+ S ++     E  +  +       + +E+  +L
Sbjct: 554 HLALRAQALLREKGVRVR--VVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGASL 608


>1gso_A Protein (glycinamide ribonucleotide synthetase); GAR-SYN,
           ATP-grAsp, purine de novo biosynthetic pathway,
           substrate channeling, ligase; 1.60A {Escherichia coli}
           SCOP: b.84.2.1 c.30.1.1 d.142.1.2
          Length = 431

 Score = 26.3 bits (57), Expect = 6.5
 Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 89  NETLEPLSIAKILREIVKKENPIIVIAGKQT 119
           N  +    I  +L +  + E   + I G + 
Sbjct: 47  NVAIGVTDIPALL-DFAQNEKIDLTIVGPEA 76


>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein,
           flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
           1s1i_O
          Length = 121

 Score = 26.2 bits (58), Expect = 7.4
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 94  PLSIAKILREIVK--KENPIIVIAGKQTTDNE-SNQTGQMLAAL 134
           P+S+++I R + +    N  +V+ G  T D          +AAL
Sbjct: 41  PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAAL 84


>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A
           {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
          Length = 307

 Score = 25.8 bits (56), Expect = 8.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 93  EPLSIAKILREIVKKENPIIVIAG 116
           EP S AK LR +++  + +IV  G
Sbjct: 8   EPFSGAKKLRHLLENTDELIVCPG 31


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,039,595
Number of extensions: 94699
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 36
Length of query: 249
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 159
Effective length of database: 3,511,270
Effective search space: 558291930
Effective search space used: 558291930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)