RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein
beta subunit [Candidatus Liberibacter asiaticus str. psy62]
(249 letters)
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
flavoprotein ETFP {Paracoccus denitrificans [TaxId:
266]}
Length = 246
Score = 229 bits (585), Expect = 2e-61
Identities = 123/246 (50%), Positives = 174/246 (70%), Gaps = 4/246 (1%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
MK+LVP+K +I+YN K R+K+D SG++ N K+SMNPFDEIA+EE+++L+EKG A E+I
Sbjct: 1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIA 60
Query: 61 VSIGSCKVEEVLKNSLAMGADRGILI----ESNETLEPLSIAKILREIVKKENPIIVIAG 116
VSIG + E L+ +LAMGADR IL+ + + +EPL++AKIL + + E ++IAG
Sbjct: 61 VSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG 120
Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
KQ DN+ N TGQMLAA++ W QATF S ++I A VTREV G T+ LPAV+T
Sbjct: 121 KQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTA 180
Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236
DL LNEPRY SLPNI+KA+KK +++K A D+ +D+ PRL+V+ E + G+++ S
Sbjct: 181 DLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVD 240
Query: 237 KLIEIL 242
+L+ L
Sbjct: 241 ELVGKL 246
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer
flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Length = 252
Score = 206 bits (524), Expect = 2e-54
Identities = 110/247 (44%), Positives = 162/247 (65%), Gaps = 4/247 (1%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
+++LV +K VI+Y K+R+K D +G+ T+ K SMNPF EIA+EE+++L+EK + EVI
Sbjct: 1 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 60
Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIES----NETLEPLSIAKILREIVKKENPIIVIAG 116
VS G + +E ++ +LAMGADRGI +E E L PL +A++L ++ +KE +V+ G
Sbjct: 61 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 120
Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176
KQ D++ NQTGQM A + WPQ TF S + + + V RE+ G T+ LPAV+T
Sbjct: 121 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTA 180
Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236
DL LNEPRY +LPNI+KA+KK+IE K D +DLT +L V+ E+ G+++ +T
Sbjct: 181 DLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTE 240
Query: 237 KLIEILK 243
L+ LK
Sbjct: 241 DLVAKLK 247
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer
flavoprotein ETFP {Methylophilus methylotrophus [TaxId:
17]}
Length = 262
Score = 172 bits (437), Expect = 2e-44
Identities = 78/260 (30%), Positives = 135/260 (51%), Gaps = 18/260 (6%)
Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKG-IATEVI 59
MKILV +K I+ D ++ + +N +D+ +LEE+++++E EV+
Sbjct: 1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVV 60
Query: 60 VVSIGSCKVEEVLKNSLAMGADRGILIESNET--LEPLSIAKILREIVKKENPIIVIAGK 117
VVS+G +V+E L+ LA GADR + + + + + + +IL E++KKE P +V AG
Sbjct: 61 VVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGV 120
Query: 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKII--DNHAIVTREVGHGTM-TMETPLPAVI 174
Q++D TG +A+ + WP A V++++ DN A++ RE+ G + +E PAV+
Sbjct: 121 QSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVL 180
Query: 175 TVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTP------RLKVLRFEENRAERK 228
T+ L +N+PRY SL I +A K IE+ D + +V R + +
Sbjct: 181 TIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYI-PEKGR 239
Query: 229 GLRLYST-----TKLIEILK 243
+ T K+I+I+
Sbjct: 240 ATMIEGTISEQAAKIIQIIN 259
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 26.9 bits (58), Expect = 1.8
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 69 EEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTG 128
L+ ++ + + G+ I T E A+ + E K ++ G T NE +
Sbjct: 14 NLPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVST-A 72
Query: 129 QMLAALMRWPQATFV 143
+ P +
Sbjct: 73 LIQCEGDDIPALGIL 87
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 26.7 bits (59), Expect = 2.0
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 138 PQATFV--SNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRY 185
P + + ++ + + P VI DL+L +P Y
Sbjct: 76 PLSISIFHYGTSQKSERELLEIVKKNFDLR-----PGVIVRDLDLKKPIY 120
>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase
HisC {Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 26.3 bits (56), Expect = 2.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 176 VDLNLNEPRYISLPNIIKARKKRIEKKK 203
L LNE + +++ +R+
Sbjct: 22 TYLALNENPFPFPEDLVDEVFRRLNSDA 49
>d1rl0a_ d.165.1.1 (A:) Dianthin 30 {Clove pink (Dianthus
caryophyllus) [TaxId: 3570]}
Length = 255
Score = 25.3 bits (55), Expect = 5.3
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 194 ARKKRIEKKKATDFAIDLTPRLKVLRFEEN 223
AR + I+ +F KV++F+ +
Sbjct: 179 ARFRYIQNLVTKNFPNKFDSENKVIQFQVS 208
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 24.9 bits (53), Expect = 7.6
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 97 IAKILREIVKKENPIIVIAGKQTTDNESNQTGQM 130
+ L++I+ +++ +I+ Q T N + +
Sbjct: 38 VDYTLQDIICEDSTLILEQLAQHTTESDNISRKY 71
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 24.4 bits (52), Expect = 8.5
Identities = 7/65 (10%), Positives = 21/65 (32%)
Query: 88 SNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIK 147
S+E ++ + L+ I ++ +++ K + AL +
Sbjct: 3 SDEASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSF 62
Query: 148 IIDNH 152
+ +
Sbjct: 63 FPEEN 67
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 24.7 bits (54), Expect = 8.8
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 76 LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIV 113
A G +R +++ + + +P +I KE+P +V
Sbjct: 12 QATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLV 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.359
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 878,155
Number of extensions: 40605
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 19
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)