HHsearch alignment for GI: 254780369 and conserved domain: cd01714
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=98.86 E-value=1.6e-07 Score=68.07 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=101.0
Q ss_pred HHHHHHHHCCCEEEEEECCC-HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEECCC---CCH
Q ss_conf 99999873893479998189-268889987078973999944810100012322455787403--456044157---810
Q gi|254780369|r 26 IVTAAQKISHDIHVLVLGDN-IENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DYKTIMASA---NAM 99 (318)
Q Consensus 26 ll~~A~~lg~~v~avv~G~~-~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~~~Vl~~~---t~~ 99 (318)
T Consensus 44 Alrlke~~g~~VtvlsvGp~~a~~~Lr~alAm-GaD~ai~i~d~~~~~~D~~~tA~~La~~i~~~~~DLIl~G~~s~D~~ 122 (202)
T cd01714 44 ALRLKEKYGGEVTVVSMGPPQAEEALREALAM-GADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGD 122 (202)
T ss_pred HHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99986603988999993747889999999970-89835998065556669899999999999875998899954545799
Q ss_pred HHHHHHHHHHHCCCCEECCCEEEC--CC-CEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 344678888751774101320224--68-72797410695268999779842799516864333
Q gi|254780369|r 100 GKDILPRVAAMLDVMQVSEVIEII--SP-KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPA 160 (318)
Q Consensus 100 GrdlaprlAarL~~~~vsdvv~i~--~~-~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~ 160 (318)
T Consensus 123 ~g~v~~~lA~~Lg~P~vt~v~~i~~~~~~~~v~r~~~~g--~e~~~~-~lPavisv~~~~n~pR 183 (202)
T cd01714 123 TGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGG--VETVEV-KLPAVITVDLGINEPR 183 (202)
T ss_pred CCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCE--EEEEEE-CCCEEEEEECCCCCCC
T ss_conf 777999999994897224888999939999999984896--999996-3999999989988657