HHSEARCH alignment of GI: 254780369 and SCOP domain: d1efva1

Alignment
>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1e-39  Score=269.89  Aligned_cols=184  Identities=28%  Similarity=0.521  Sum_probs=168.3

Q ss_pred             EEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf             48999980297587899999999987389347999818926888998707897399994481010001232245578740
Q gi|254780369|r    7 PVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIA   86 (318)
Q Consensus         7 ~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~   86 (318)
                      ++|||+||+||+|++.|+|++++||+||++++++++|.+.+..+.++.+++|+++|+.++++.+++|.++.|+.++.+++
T Consensus         2 S~LV~~E~~~g~l~~~slE~it~A~~lg~~v~avv~G~~~~~~a~~~~~~~g~~~V~~~~~~~~~~~~~~~~a~~l~~~~   81 (188)
T d1efva1           2 STLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQ   81 (188)
T ss_dssp             EEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESCCHHHHHHHHHSTTCCEEEEEECGGGTTCCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHH
T ss_conf             29999995899898999999999998599807999888826789998725777347860471331133057799999874


Q ss_pred             C--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf             3--45604415781034467888875177410132022468727974106952689997798427995168643333556
Q gi|254780369|r   87 R--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAE  164 (318)
Q Consensus        87 ~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~~  164 (318)
                      +  +|++||+++|++||||+||||+||++++++||++++.+.+++||+|+||++++++++.+++|+|+|||+|++.+..+
T Consensus        82 ~~~~p~~Vl~~~t~~grdlaprlAa~l~~~~vsdv~~l~~~~~~~r~~y~Gk~~~~v~~~~~~~i~tvr~~sf~~~~~~~  161 (188)
T d1efva1          82 KQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG  161 (188)
T ss_dssp             HHHCCSEEEEESSHHHHHHHHHHHHHHTCCCEEEECEEEETTEEEEEETTTTEEEEEEECCSSEEEEECGGGSCCCCSSS
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf             03688789983767899999999998675742561797359908887757821499994799889998887666676679


Q ss_pred             CCCCEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf             66661562111024453025885444314
Q gi|254780369|r  165 KVASIHKISAEVLEKYISNTRFIKEERTS  193 (318)
Q Consensus       165 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~~  193 (318)
                      +.++++.++.+...   ..+++++++..+
T Consensus       162 ~~~~ve~~~~~~~~---~~~~~v~~e~~~  187 (188)
T d1efva1         162 GSASSEKASSTSPV---EISEWLDQKLTK  187 (188)
T ss_dssp             CCCEEEECCCCCCC---CSEEEEEEEECC
T ss_pred             CCCEEEECCCCCCC---CCEEEEEEEECC
T ss_conf             97228982788887---751787435345


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]